Wall clock time and date at job start Mon Mar 30 2020 06:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47135 * 2 1 4 4 C 1.52998 * 109.47272 * 240.00230 * 2 1 3 5 5 N 1.46493 * 109.47181 * 65.00323 * 4 2 1 6 6 C 1.38859 * 120.00032 * 180.02562 * 5 4 2 7 7 C 1.39566 * 119.84205 * 179.97438 * 6 5 4 8 8 C 1.36343 * 120.16156 * 180.25274 * 7 6 5 9 9 C 1.40885 * 119.83322 * 359.49976 * 8 7 6 10 10 C 1.41139 * 120.15566 * 180.25308 * 9 8 7 11 11 H 1.08001 * 120.00212 * 205.20861 * 10 9 8 12 12 C 1.39866 * 119.99739 * 25.21466 * 10 9 8 13 13 N 1.30905 * 120.00516 * 17.98538 * 12 10 9 14 14 Si 1.86800 * 119.99703 * 197.98949 * 12 10 9 15 15 H 1.48500 * 109.47111 * 94.50960 * 14 12 10 16 16 H 1.48494 * 109.47184 * 214.50775 * 14 12 10 17 17 H 1.48495 * 109.47132 * 334.50699 * 14 12 10 18 18 C 1.40883 * 119.69120 * 0.51620 * 9 8 7 19 19 C 1.36343 * 119.83748 * 359.73633 * 18 9 8 20 20 C 1.53003 * 109.46951 * 120.00087 * 2 1 3 21 21 C 1.53776 * 113.61585 * 277.49714 * 20 2 1 22 22 C 1.53773 * 87.08589 * 220.02053 * 21 20 2 23 23 C 1.53777 * 113.61244 * 180.02562 * 20 2 1 24 24 H 1.09004 * 109.47196 * 59.99933 * 1 2 3 25 25 H 1.09008 * 109.47045 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47704 * 299.99863 * 1 2 3 27 27 H 1.09000 * 109.47001 * 304.99985 * 4 2 1 28 28 H 1.09005 * 109.47018 * 185.00383 * 4 2 1 29 29 H 0.97003 * 120.00477 * 359.97438 * 5 4 2 30 30 H 1.08002 * 119.91996 * 359.97281 * 7 6 5 31 31 H 1.08003 * 120.08186 * 179.74363 * 8 7 6 32 32 H 0.97000 * 120.00294 * 180.02562 * 13 12 10 33 33 H 1.08002 * 120.08507 * 179.71467 * 18 9 8 34 34 H 1.07994 * 119.92406 * 179.97438 * 19 18 9 35 35 H 1.08999 * 112.84763 * 48.80772 * 20 2 1 36 36 H 1.09006 * 113.61468 * 334.56986 * 21 20 2 37 37 H 1.09006 * 113.61058 * 105.46981 * 21 20 2 38 38 H 1.09005 * 113.61634 * 270.88561 * 22 21 20 39 39 H 1.08995 * 113.69527 * 139.99391 * 22 21 20 40 40 H 1.09002 * 113.61642 * 254.52622 * 23 20 2 41 41 H 1.08995 * 113.62043 * 25.34876 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6525 0.0355 -2.4423 6 6 2.0061 -0.4270 -3.7030 7 6 1.6348 0.2962 -4.8374 8 6 1.9740 -0.1546 -6.0786 9 6 2.7103 -1.3481 -6.2138 10 6 3.0698 -1.8182 -7.4951 11 1 3.2540 -2.8708 -7.6521 12 6 3.1875 -0.9209 -8.5615 13 7 3.3160 0.3606 -8.3276 14 14 3.1613 -1.5513 -10.3197 15 1 1.7781 -1.4704 -10.8540 16 1 4.0645 -0.7214 -11.1567 17 1 3.6204 -2.9633 -10.3462 18 6 3.0814 -2.0731 -5.0642 19 6 2.7308 -1.6131 -3.8296 20 6 2.0399 -0.7213 1.2493 21 6 2.0719 0.1674 2.5038 22 6 3.4106 -0.5053 2.8504 23 6 3.5737 -0.7763 1.3458 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 1.6054 -1.7197 -1.2952 28 1 3.1263 -0.7994 -1.2055 29 1 1.1483 0.8592 -2.3518 30 1 1.0734 1.2128 -4.7320 31 1 1.6824 0.4039 -6.9558 32 1 3.3973 0.9829 -9.0672 33 1 3.6419 -2.9913 -5.1607 34 1 3.0141 -2.1680 -2.9474 35 1 1.5573 -1.6856 1.4078 36 1 2.1620 1.2311 2.2832 37 1 1.2757 -0.0525 3.2150 38 1 3.3026 -1.4104 3.4482 39 1 4.1547 0.1817 3.2533 40 1 3.9904 -1.7583 1.1219 41 1 4.0743 0.0285 0.8076 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398852290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:07 Heat of formation + Delta-G solvation = 22.173190 kcal Electronic energy + Delta-G solvation = -18649.711694 eV Core-core repulsion = 15914.881619 eV Total energy + Delta-G solvation = -2734.830075 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.45715 -37.83939 -35.51759 -33.49086 -31.83114 -29.51722 -28.43653 -26.69950 -25.44415 -25.08046 -23.61379 -21.30346 -20.34551 -19.84582 -19.49871 -17.12607 -16.18982 -15.66394 -15.25771 -15.01723 -14.41184 -14.37576 -13.78659 -13.14916 -12.75240 -12.71163 -12.53394 -12.45693 -12.30044 -11.97228 -11.87709 -11.73149 -11.31194 -11.10561 -10.98790 -10.82962 -10.75500 -10.56579 -10.43414 -10.14197 -10.04267 -9.60981 -9.25308 -9.17730 -8.47804 -7.44424 -6.60620 -6.32721 -3.99296 2.94534 3.14195 3.17776 3.21417 3.39764 4.08542 4.26292 4.49558 4.54062 4.69809 4.76237 4.80649 5.06775 5.24020 5.34095 5.47911 5.60325 5.64787 5.71816 5.75192 5.84418 5.85623 5.90722 5.94729 6.10697 6.15842 6.26654 6.29743 6.33112 6.36544 6.50517 6.90804 7.11430 7.25123 7.35888 7.64544 7.71038 7.84902 8.19337 8.38643 8.55334 8.73977 8.85494 9.10138 9.19907 10.41496 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.048923 B = 0.003470 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.190831 B = 8066.673926 C = 8313.263384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.072 0.928 4 C 0.145 3.855 5 N -0.761 5.761 6 C 0.095 3.905 7 C -0.165 4.165 8 C -0.122 4.122 9 C 0.074 3.926 10 C -0.468 4.468 11 H 0.072 0.928 12 C 0.075 3.925 13 N -0.809 5.809 14 Si 0.903 3.097 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.264 1.264 18 C -0.188 4.188 19 C -0.160 4.160 20 C -0.101 4.101 21 C -0.135 4.135 22 C -0.144 4.144 23 C -0.138 4.138 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.383 0.617 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.275 0.725 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.843 0.666 16.300 16.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.090 0.910 4 C 0.020 3.980 5 N -0.397 5.397 6 C -0.003 4.003 7 C -0.187 4.187 8 C -0.142 4.142 9 C 0.071 3.929 10 C -0.500 4.500 11 H 0.090 0.910 12 C -0.140 4.140 13 N -0.436 5.436 14 Si 0.728 3.272 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.188 1.188 18 C -0.208 4.208 19 C -0.183 4.183 20 C -0.120 4.120 21 C -0.172 4.172 22 C -0.182 4.182 23 C -0.175 4.175 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.216 0.784 30 H 0.104 0.896 31 H 0.135 0.865 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.707 0.725 16.262 16.501 hybrid contribution -0.103 0.115 -0.822 0.836 sum -2.810 0.841 15.440 15.716 Atomic orbital electron populations 1.21774 0.95027 1.01898 1.01315 1.21336 0.96049 0.99631 0.94034 0.91003 1.20996 0.98352 0.94671 0.84015 1.43906 1.65418 1.28048 1.02350 1.17364 1.02980 0.95912 0.84009 1.20037 1.06342 0.99835 0.92481 1.20898 0.99435 0.98618 0.95227 1.17484 0.91030 0.92045 0.92339 1.19374 1.42641 0.94952 0.92986 0.90968 1.25788 0.92694 0.94514 1.01033 1.69862 1.37128 1.03065 1.33588 0.86401 0.78723 0.79842 0.82251 1.19647 1.20597 1.18840 1.20564 1.06122 1.01999 0.92138 1.19864 1.04893 0.96901 0.96604 1.22522 0.96179 0.99191 0.94127 1.22940 0.97489 0.99325 0.97492 1.22809 0.97782 1.00670 0.96912 1.22939 0.96275 1.02284 0.96048 0.92441 0.92729 0.93087 0.93827 0.93543 0.78430 0.89625 0.86486 0.91392 0.89180 0.89520 0.89273 0.90227 0.91838 0.90449 0.91721 0.91482 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.06 37.16 0.34 -1.21 16 2 C -0.09 -1.04 2.17 -90.62 -0.20 -1.24 16 3 H 0.07 0.83 7.94 -51.93 -0.41 0.42 16 4 C 0.15 2.15 4.17 -4.05 -0.02 2.14 16 5 N -0.76 -13.49 5.43 -58.50 -0.32 -13.81 16 6 C 0.09 2.11 6.67 -83.69 -0.56 1.55 16 7 C -0.17 -3.94 9.82 -39.77 -0.39 -4.33 16 8 C -0.12 -3.25 8.63 -39.26 -0.34 -3.59 16 9 C 0.07 2.04 5.57 -106.79 -0.59 1.44 16 10 C -0.47 -12.96 9.03 -37.87 -0.34 -13.30 16 11 H 0.07 1.93 7.91 -52.49 -0.41 1.52 16 12 C 0.07 1.96 5.12 -17.34 -0.09 1.87 16 13 N -0.81 -21.83 11.01 55.54 0.61 -21.22 16 14 Si 0.90 19.53 29.60 -169.99 -5.03 14.50 16 15 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 16 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 17 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 18 C -0.19 -4.78 9.74 -39.26 -0.38 -5.16 16 19 C -0.16 -3.72 9.23 -39.77 -0.37 -4.08 16 20 C -0.10 -1.00 3.13 -89.81 -0.28 -1.28 16 21 C -0.14 -1.16 7.63 -25.93 -0.20 -1.36 16 22 C -0.14 -1.22 8.08 -25.94 -0.21 -1.43 16 23 C -0.14 -1.37 6.59 -25.94 -0.17 -1.54 16 24 H 0.06 0.66 7.18 -51.93 -0.37 0.29 16 25 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.68 7.92 -51.93 -0.41 0.27 16 28 H 0.05 0.73 7.07 -51.93 -0.37 0.36 16 29 H 0.38 6.17 7.65 -40.82 -0.31 5.86 16 30 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 31 H 0.12 3.23 6.21 -52.48 -0.33 2.90 16 32 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 33 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 34 H 0.09 1.80 6.68 -52.49 -0.35 1.45 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.68 7.96 -51.93 -0.41 0.27 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.88 8.10 -51.93 -0.42 0.45 16 LS Contribution 328.01 15.07 4.94 4.94 Total: -1.00 -28.25 328.01 -10.33 -38.58 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.74 Total: 8.51 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: -3.80 Total: -31.52 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.29 Total: -35.03 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.25 -10.33 -38.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398852290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.758 kcal (2) G-P(sol) polarization free energy of solvation -28.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds