Wall clock time and date at job start Mon Mar 30 2020 06:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47135 * 2 1 4 4 C 1.52998 * 109.47272 * 240.00230 * 2 1 3 5 5 N 1.46493 * 109.47181 * 65.00323 * 4 2 1 6 6 C 1.38859 * 120.00032 * 180.02562 * 5 4 2 7 7 C 1.39566 * 119.84205 * 179.97438 * 6 5 4 8 8 C 1.36343 * 120.16156 * 180.25274 * 7 6 5 9 9 C 1.40885 * 119.83322 * 359.49976 * 8 7 6 10 10 C 1.41139 * 120.15566 * 180.25308 * 9 8 7 11 11 H 1.08001 * 120.00212 * 205.20861 * 10 9 8 12 12 C 1.39866 * 119.99739 * 25.21466 * 10 9 8 13 13 N 1.30905 * 120.00516 * 17.98538 * 12 10 9 14 14 Si 1.86800 * 119.99703 * 197.98949 * 12 10 9 15 15 H 1.48500 * 109.47111 * 94.50960 * 14 12 10 16 16 H 1.48494 * 109.47184 * 214.50775 * 14 12 10 17 17 H 1.48495 * 109.47132 * 334.50699 * 14 12 10 18 18 C 1.40883 * 119.69120 * 0.51620 * 9 8 7 19 19 C 1.36343 * 119.83748 * 359.73633 * 18 9 8 20 20 C 1.53003 * 109.46951 * 120.00087 * 2 1 3 21 21 C 1.53776 * 113.61585 * 277.49714 * 20 2 1 22 22 C 1.53773 * 87.08589 * 220.02053 * 21 20 2 23 23 C 1.53777 * 113.61244 * 180.02562 * 20 2 1 24 24 H 1.09004 * 109.47196 * 59.99933 * 1 2 3 25 25 H 1.09008 * 109.47045 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47704 * 299.99863 * 1 2 3 27 27 H 1.09000 * 109.47001 * 304.99985 * 4 2 1 28 28 H 1.09005 * 109.47018 * 185.00383 * 4 2 1 29 29 H 0.97003 * 120.00477 * 359.97438 * 5 4 2 30 30 H 1.08002 * 119.91996 * 359.97281 * 7 6 5 31 31 H 1.08003 * 120.08186 * 179.74363 * 8 7 6 32 32 H 0.97000 * 120.00294 * 180.02562 * 13 12 10 33 33 H 1.08002 * 120.08507 * 179.71467 * 18 9 8 34 34 H 1.07994 * 119.92406 * 179.97438 * 19 18 9 35 35 H 1.08999 * 112.84763 * 48.80772 * 20 2 1 36 36 H 1.09006 * 113.61468 * 334.56986 * 21 20 2 37 37 H 1.09006 * 113.61058 * 105.46981 * 21 20 2 38 38 H 1.09005 * 113.61634 * 270.88561 * 22 21 20 39 39 H 1.08995 * 113.69527 * 139.99391 * 22 21 20 40 40 H 1.09002 * 113.61642 * 254.52622 * 23 20 2 41 41 H 1.08995 * 113.62043 * 25.34876 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6525 0.0355 -2.4423 6 6 2.0061 -0.4270 -3.7030 7 6 1.6348 0.2962 -4.8374 8 6 1.9740 -0.1546 -6.0786 9 6 2.7103 -1.3481 -6.2138 10 6 3.0698 -1.8182 -7.4951 11 1 3.2540 -2.8708 -7.6521 12 6 3.1875 -0.9209 -8.5615 13 7 3.3160 0.3606 -8.3276 14 14 3.1613 -1.5513 -10.3197 15 1 1.7781 -1.4704 -10.8540 16 1 4.0645 -0.7214 -11.1567 17 1 3.6204 -2.9633 -10.3462 18 6 3.0814 -2.0731 -5.0642 19 6 2.7308 -1.6131 -3.8296 20 6 2.0399 -0.7213 1.2493 21 6 2.0719 0.1674 2.5038 22 6 3.4106 -0.5053 2.8504 23 6 3.5737 -0.7763 1.3458 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 1.6054 -1.7197 -1.2952 28 1 3.1263 -0.7994 -1.2055 29 1 1.1483 0.8592 -2.3518 30 1 1.0734 1.2128 -4.7320 31 1 1.6824 0.4039 -6.9558 32 1 3.3973 0.9829 -9.0672 33 1 3.6419 -2.9913 -5.1607 34 1 3.0141 -2.1680 -2.9474 35 1 1.5573 -1.6856 1.4078 36 1 2.1620 1.2311 2.2832 37 1 1.2757 -0.0525 3.2150 38 1 3.3026 -1.4104 3.4482 39 1 4.1547 0.1817 3.2533 40 1 3.9904 -1.7583 1.1219 41 1 4.0743 0.0285 0.8076 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398852290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:07 Heat of formation + Delta-G solvation = 8.961713 kcal Electronic energy + Delta-G solvation = -18650.284586 eV Core-core repulsion = 15914.881619 eV Total energy + Delta-G solvation = -2735.402967 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37651 -39.55119 -36.98841 -35.17872 -33.29954 -31.41261 -30.24063 -27.79177 -26.51423 -26.14973 -25.13269 -22.92783 -22.05564 -21.18288 -20.28512 -19.09916 -17.75670 -17.12082 -16.50244 -16.15683 -15.75687 -15.53630 -15.49688 -14.60611 -14.46002 -14.01065 -13.81061 -13.68372 -13.44402 -13.36653 -13.26155 -12.95149 -12.76450 -12.69232 -12.57784 -12.24492 -11.98883 -11.76759 -11.54034 -11.33669 -11.18623 -11.07092 -10.92233 -10.85821 -10.27393 -9.40257 -8.55069 -8.14461 -6.00506 1.10147 1.18864 1.40320 1.53423 1.59198 2.27884 2.84223 2.92802 3.66259 3.76805 3.85287 3.86462 4.01202 4.16686 4.37562 4.41168 4.47184 4.49856 4.62815 4.81051 4.86736 4.92592 4.93200 4.97047 5.02276 5.07809 5.12661 5.16772 5.19399 5.27497 5.33083 5.37171 5.43085 5.49071 5.70274 5.74377 5.77439 5.93146 6.18774 6.41571 6.68413 6.88987 7.08761 7.15024 7.32201 8.48975 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.048923 B = 0.003470 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.190831 B = 8066.673926 C = 8313.263384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 H 0.073 0.927 4 C 0.143 3.857 5 N -0.751 5.751 6 C 0.113 3.887 7 C -0.176 4.176 8 C -0.140 4.140 9 C 0.036 3.964 10 C -0.507 4.507 11 H 0.067 0.933 12 C 0.032 3.968 13 N -0.842 5.842 14 Si 0.977 3.023 15 H -0.265 1.265 16 H -0.270 1.270 17 H -0.261 1.261 18 C -0.198 4.198 19 C -0.168 4.168 20 C -0.101 4.101 21 C -0.129 4.129 22 C -0.139 4.139 23 C -0.146 4.146 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.394 0.606 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.282 0.718 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.354 0.808 17.968 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 H 0.092 0.908 4 C 0.018 3.982 5 N -0.386 5.386 6 C 0.013 3.987 7 C -0.198 4.198 8 C -0.160 4.160 9 C 0.033 3.967 10 C -0.539 4.539 11 H 0.085 0.915 12 C -0.180 4.180 13 N -0.470 5.470 14 Si 0.799 3.201 15 H -0.189 1.189 16 H -0.195 1.195 17 H -0.185 1.185 18 C -0.218 4.218 19 C -0.190 4.190 20 C -0.120 4.120 21 C -0.166 4.166 22 C -0.176 4.176 23 C -0.183 4.183 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.228 0.772 30 H 0.125 0.875 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.229 0.880 17.983 18.292 hybrid contribution 0.044 0.094 -1.138 1.142 sum -3.185 0.974 16.845 17.171 Atomic orbital electron populations 1.21758 0.94313 1.01923 1.01803 1.21256 0.96503 0.99360 0.92886 0.90844 1.21163 0.98122 0.94682 0.84222 1.43990 1.64546 1.28460 1.01606 1.17474 1.00787 0.94921 0.85473 1.20239 1.06636 1.00824 0.92082 1.20845 1.00505 0.98826 0.95852 1.17805 0.92479 0.93210 0.93238 1.19594 1.44878 0.95083 0.94297 0.91497 1.26616 0.91732 0.94532 1.05124 1.69921 1.37788 1.04203 1.35136 0.85268 0.79016 0.79253 0.76549 1.18946 1.19504 1.18497 1.20759 1.06225 1.02150 0.92646 1.20100 1.04840 0.97445 0.96648 1.22533 0.95965 0.99584 0.93925 1.22913 0.97873 0.99097 0.96738 1.22805 0.97845 1.01167 0.95832 1.22967 0.96263 1.01751 0.97340 0.93342 0.92936 0.91243 0.94166 0.94083 0.77189 0.87480 0.88271 0.90752 0.88743 0.87059 0.88899 0.90098 0.90701 0.89569 0.91223 0.91896 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.06 71.98 0.65 -2.01 16 2 C -0.08 -1.65 2.17 -10.79 -0.02 -1.67 16 3 H 0.07 1.50 7.94 -2.39 -0.02 1.49 16 4 C 0.14 3.95 4.17 86.38 0.36 4.31 16 5 N -0.75 -25.18 5.43 -339.00 -1.84 -27.02 16 6 C 0.11 4.94 6.67 38.67 0.26 5.19 16 7 C -0.18 -8.37 9.82 22.15 0.22 -8.16 16 8 C -0.14 -7.71 8.63 22.48 0.19 -7.51 16 9 C 0.04 2.02 5.57 -21.27 -0.12 1.91 16 10 C -0.51 -29.08 9.03 23.38 0.21 -28.87 16 11 H 0.07 3.73 7.91 -2.91 -0.02 3.71 16 12 C 0.03 1.70 5.12 85.23 0.44 2.14 16 13 N -0.84 -46.66 11.01 21.82 0.24 -46.42 16 14 Si 0.98 40.72 29.60 68.60 2.03 42.75 16 15 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 16 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 17 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 18 C -0.20 -10.22 9.74 22.48 0.22 -10.00 16 19 C -0.17 -7.68 9.23 22.15 0.20 -7.47 16 20 C -0.10 -1.74 3.13 -10.27 -0.03 -1.77 16 21 C -0.13 -1.83 7.63 31.12 0.24 -1.59 16 22 C -0.14 -2.00 8.08 31.11 0.25 -1.75 16 23 C -0.15 -2.62 6.59 31.11 0.20 -2.41 16 24 H 0.05 1.00 7.18 -2.39 -0.02 0.98 16 25 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 1.17 7.92 -2.39 -0.02 1.15 16 28 H 0.04 1.21 7.07 -2.38 -0.02 1.19 16 29 H 0.39 11.77 7.65 -92.71 -0.71 11.07 16 30 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 31 H 0.10 5.71 6.21 -2.91 -0.02 5.69 16 32 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 33 H 0.09 4.65 8.06 -2.91 -0.02 4.62 16 34 H 0.11 4.47 6.68 -2.91 -0.02 4.45 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.15 7.96 -2.38 -0.02 1.13 16 37 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 Total: -1.00 -61.72 328.01 3.99 -57.73 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.29 Total: 32.64 kcal Atomic # 6 Polarization: -62.95 SS G_CDS: 3.27 Total: -59.68 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -1.60 Total: -73.44 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -61.72 3.99 -57.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398852290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.687 kcal (2) G-P(sol) polarization free energy of solvation -61.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds