Wall clock time and date at job start Mon Mar 30 2020 06:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47518 * 2 1 4 4 C 1.53009 * 109.46731 * 119.99835 * 2 1 3 5 5 N 1.46491 * 109.47133 * 294.99621 * 4 2 1 6 6 C 1.38864 * 120.00028 * 179.97438 * 5 4 2 7 7 C 1.39565 * 119.84275 * 180.02562 * 6 5 4 8 8 C 1.36342 * 120.16238 * 179.72339 * 7 6 5 9 9 C 1.40888 * 119.83186 * 0.25951 * 8 7 6 10 10 C 1.41135 * 120.15268 * 180.02562 * 9 8 7 11 11 H 1.08005 * 120.00157 * 204.60050 * 10 9 8 12 12 C 1.39865 * 120.00289 * 24.60189 * 10 9 8 13 13 N 1.30911 * 119.99640 * 17.97744 * 12 10 9 14 14 Si 1.86797 * 120.00221 * 197.97125 * 12 10 9 15 15 H 1.48497 * 109.47206 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46936 * 120.00235 * 14 12 10 17 17 H 1.48498 * 109.47220 * 240.00054 * 14 12 10 18 18 C 1.40889 * 119.69394 * 359.97438 * 9 8 7 19 19 C 1.36343 * 119.83140 * 0.02562 * 18 9 8 20 20 C 1.52999 * 109.47119 * 239.99327 * 2 1 3 21 21 C 1.53784 * 113.61458 * 159.13904 * 20 2 1 22 22 C 1.53947 * 87.02077 * 220.05252 * 21 20 2 23 23 C 1.53785 * 87.11455 * 25.36402 * 22 21 20 24 24 H 1.08998 * 109.47518 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47029 * 300.00894 * 1 2 3 26 26 H 1.08996 * 109.46883 * 59.99788 * 1 2 3 27 27 H 1.08998 * 109.46994 * 174.99780 * 4 2 1 28 28 H 1.09005 * 109.47136 * 54.99852 * 4 2 1 29 29 H 0.97003 * 120.00479 * 0.02562 * 5 4 2 30 30 H 1.07997 * 119.91739 * 0.02562 * 7 6 5 31 31 H 1.07995 * 120.08828 * 180.27427 * 8 7 6 32 32 H 0.97002 * 119.99580 * 179.97438 * 13 12 10 33 33 H 1.07993 * 120.08509 * 180.02562 * 18 9 8 34 34 H 1.08005 * 119.91617 * 180.02562 * 19 18 9 35 35 H 1.08999 * 112.85281 * 290.33786 * 20 2 1 36 36 H 1.09000 * 113.61408 * 334.57487 * 21 20 2 37 37 H 1.08997 * 113.61107 * 105.47437 * 21 20 2 38 38 H 1.08996 * 113.54049 * 270.81093 * 22 21 20 39 39 H 1.08999 * 113.74344 * 139.93951 * 22 21 20 40 40 H 1.08997 * 113.61358 * 220.09211 * 23 22 21 41 41 H 1.08999 * 113.61501 * 89.18696 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 1.6524 0.0354 2.4424 6 6 2.0058 -0.4272 3.7031 7 6 1.6345 0.2961 4.8375 8 6 1.9732 -0.1550 6.0788 9 6 2.7046 -1.3515 6.2142 10 6 3.0584 -1.8250 7.4959 11 1 3.9132 -2.4742 7.6148 12 6 2.3019 -1.4534 8.6121 13 7 1.0933 -0.9757 8.4541 14 14 3.0159 -1.6390 10.3282 15 1 4.3888 -2.1974 10.2354 16 1 3.0660 -0.3104 10.9898 17 1 2.1608 -2.5561 11.1236 18 6 3.0803 -2.0738 5.0644 19 6 2.7347 -1.6107 3.8295 20 6 2.0400 -0.7214 -1.2491 21 6 3.4867 -0.3578 -1.6230 22 6 3.0234 -0.3621 -3.0911 23 6 1.6121 -0.0510 -2.5654 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 3.1262 -0.7996 1.2057 28 1 1.6052 -1.7198 1.2953 29 1 1.1483 0.8592 2.3518 30 1 1.0732 1.2127 4.7321 31 1 1.6814 0.4033 6.9560 32 1 0.5685 -0.7184 9.2282 33 1 3.6407 -2.9919 5.1609 34 1 3.0216 -2.1635 2.9471 35 1 1.8519 -1.7948 -1.2245 36 1 3.7964 0.6243 -1.2657 37 1 4.2079 -1.1410 -1.3895 38 1 3.1055 -1.3375 -3.5706 39 1 3.4533 0.4412 -3.6893 40 1 0.8222 -0.5869 -3.0917 41 1 1.4082 1.0152 -2.4663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398852292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:10 Heat of formation + Delta-G solvation = 22.145719 kcal Electronic energy + Delta-G solvation = -18609.561711 eV Core-core repulsion = 15874.730445 eV Total energy + Delta-G solvation = -2734.831266 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.44466 -37.84808 -35.53079 -33.48706 -31.81009 -29.51242 -28.43045 -26.74926 -25.33660 -25.14578 -23.65174 -21.31063 -20.34937 -19.84350 -19.48285 -17.13172 -16.20692 -15.68224 -15.21165 -15.01467 -14.46070 -14.33851 -13.77951 -13.19882 -12.77224 -12.70948 -12.56822 -12.50992 -12.35338 -11.91538 -11.79120 -11.63212 -11.42573 -11.05271 -10.96492 -10.85447 -10.74983 -10.59243 -10.40884 -10.18028 -10.06321 -9.61424 -9.25595 -9.17645 -8.47611 -7.44215 -6.60800 -6.33012 -3.99145 2.93431 3.14358 3.17661 3.23105 3.39218 4.08395 4.27572 4.47376 4.52474 4.68490 4.75099 4.80520 5.05144 5.24839 5.37243 5.46588 5.59045 5.61495 5.71219 5.74005 5.83929 5.85437 5.87689 5.95508 6.11357 6.15869 6.27097 6.30017 6.33144 6.36490 6.49215 6.90979 7.11723 7.25254 7.35678 7.64829 7.71354 7.85108 8.19369 8.38900 8.55413 8.74041 8.85590 9.10146 9.19985 10.41004 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.054073 B = 0.003404 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.695651 B = 8223.008140 C = 8543.410916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.071 0.929 4 C 0.145 3.855 5 N -0.761 5.761 6 C 0.094 3.906 7 C -0.165 4.165 8 C -0.122 4.122 9 C 0.073 3.927 10 C -0.467 4.467 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.809 5.809 14 Si 0.902 3.098 15 H -0.263 1.263 16 H -0.275 1.275 17 H -0.277 1.277 18 C -0.188 4.188 19 C -0.160 4.160 20 C -0.101 4.101 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.135 4.135 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.383 0.617 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.275 0.725 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 2.693 -16.625 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.090 0.910 4 C 0.020 3.980 5 N -0.397 5.397 6 C -0.003 4.003 7 C -0.187 4.187 8 C -0.142 4.142 9 C 0.070 3.930 10 C -0.498 4.498 11 H 0.090 0.910 12 C -0.141 4.141 13 N -0.436 5.436 14 Si 0.727 3.273 15 H -0.187 1.187 16 H -0.200 1.200 17 H -0.203 1.203 18 C -0.209 4.209 19 C -0.183 4.183 20 C -0.120 4.120 21 C -0.175 4.175 22 C -0.182 4.182 23 C -0.172 4.172 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.216 0.784 30 H 0.104 0.896 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.015 2.606 -16.573 16.776 hybrid contribution -0.015 0.158 0.823 0.838 sum -0.030 2.764 -15.750 15.991 Atomic orbital electron populations 1.21773 0.94982 1.01976 1.01321 1.21334 0.96081 0.99598 0.93966 0.91038 1.20991 0.98236 0.94706 0.84074 1.43902 1.65476 1.27996 1.02335 1.17365 1.02515 0.96430 0.83983 1.20040 1.06147 1.00068 0.92448 1.20918 1.01571 0.96588 0.95146 1.17492 0.92152 0.90951 0.92372 1.19391 1.11896 1.27350 0.91184 0.90960 1.25795 0.93862 0.93337 1.01086 1.69873 1.07640 1.33930 1.32179 0.86375 0.80269 0.78547 0.82108 1.18652 1.19998 1.20311 1.20560 1.07862 1.00087 0.92341 1.19863 1.04819 0.96990 0.96597 1.22514 0.96032 0.99966 0.93509 1.22991 0.96612 1.02032 0.95874 1.22846 0.97072 1.01594 0.96669 1.22907 0.96754 1.00852 0.96683 0.92707 0.92449 0.93012 0.93706 0.93790 0.78419 0.89628 0.86372 0.91437 0.89184 0.89532 0.89222 0.90108 0.91503 0.90431 0.91755 0.91764 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.88 37.16 0.33 -1.24 16 2 C -0.09 -1.03 2.15 -90.62 -0.19 -1.23 16 3 H 0.07 0.82 7.98 -51.93 -0.41 0.40 16 4 C 0.15 2.16 4.26 -4.04 -0.02 2.14 16 5 N -0.76 -13.51 5.43 -58.50 -0.32 -13.83 16 6 C 0.09 2.11 6.67 -83.69 -0.56 1.55 16 7 C -0.17 -3.95 9.82 -39.77 -0.39 -4.34 16 8 C -0.12 -3.27 8.64 -39.26 -0.34 -3.61 16 9 C 0.07 2.02 5.57 -106.79 -0.60 1.43 16 10 C -0.47 -12.92 9.03 -37.87 -0.34 -13.26 16 11 H 0.07 1.94 7.91 -52.48 -0.41 1.52 16 12 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 13 N -0.81 -21.80 10.96 55.54 0.61 -21.19 16 14 Si 0.90 19.50 29.60 -169.99 -5.03 14.47 16 15 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 18 C -0.19 -4.79 9.74 -39.26 -0.38 -5.17 16 19 C -0.16 -3.72 9.23 -39.77 -0.37 -4.09 16 20 C -0.10 -1.00 3.11 -89.80 -0.28 -1.28 16 21 C -0.14 -1.30 7.58 -25.83 -0.20 -1.50 16 22 C -0.14 -1.18 8.09 -25.83 -0.21 -1.39 16 23 C -0.13 -1.14 6.75 -25.91 -0.17 -1.32 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.68 7.18 -51.93 -0.37 0.31 16 26 H 0.05 0.49 7.50 -51.93 -0.39 0.10 16 27 H 0.04 0.70 7.87 -51.93 -0.41 0.29 16 28 H 0.04 0.70 7.93 -51.93 -0.41 0.28 16 29 H 0.38 6.18 7.65 -40.82 -0.31 5.86 16 30 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 31 H 0.12 3.26 6.16 -52.49 -0.32 2.94 16 32 H 0.27 6.76 8.30 -40.82 -0.34 6.42 16 33 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 34 H 0.09 1.80 6.68 -52.48 -0.35 1.45 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.78 7.99 -51.93 -0.41 0.37 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -28.28 328.17 -10.35 -38.63 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.75 Total: 8.42 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: -3.80 Total: -31.45 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.29 Total: -35.02 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.28 -10.35 -38.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398852292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.776 kcal (2) G-P(sol) polarization free energy of solvation -28.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds