Wall clock time and date at job start Mon Mar 30 2020 06:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47518 * 2 1 4 4 C 1.53009 * 109.46731 * 119.99835 * 2 1 3 5 5 N 1.46491 * 109.47133 * 294.99621 * 4 2 1 6 6 C 1.38864 * 120.00028 * 179.97438 * 5 4 2 7 7 C 1.39565 * 119.84275 * 180.02562 * 6 5 4 8 8 C 1.36342 * 120.16238 * 179.72339 * 7 6 5 9 9 C 1.40888 * 119.83186 * 0.25951 * 8 7 6 10 10 C 1.41135 * 120.15268 * 180.02562 * 9 8 7 11 11 H 1.08005 * 120.00157 * 204.60050 * 10 9 8 12 12 C 1.39865 * 120.00289 * 24.60189 * 10 9 8 13 13 N 1.30911 * 119.99640 * 17.97744 * 12 10 9 14 14 Si 1.86797 * 120.00221 * 197.97125 * 12 10 9 15 15 H 1.48497 * 109.47206 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46936 * 120.00235 * 14 12 10 17 17 H 1.48498 * 109.47220 * 240.00054 * 14 12 10 18 18 C 1.40889 * 119.69394 * 359.97438 * 9 8 7 19 19 C 1.36343 * 119.83140 * 0.02562 * 18 9 8 20 20 C 1.52999 * 109.47119 * 239.99327 * 2 1 3 21 21 C 1.53784 * 113.61458 * 159.13904 * 20 2 1 22 22 C 1.53947 * 87.02077 * 220.05252 * 21 20 2 23 23 C 1.53785 * 87.11455 * 25.36402 * 22 21 20 24 24 H 1.08998 * 109.47518 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47029 * 300.00894 * 1 2 3 26 26 H 1.08996 * 109.46883 * 59.99788 * 1 2 3 27 27 H 1.08998 * 109.46994 * 174.99780 * 4 2 1 28 28 H 1.09005 * 109.47136 * 54.99852 * 4 2 1 29 29 H 0.97003 * 120.00479 * 0.02562 * 5 4 2 30 30 H 1.07997 * 119.91739 * 0.02562 * 7 6 5 31 31 H 1.07995 * 120.08828 * 180.27427 * 8 7 6 32 32 H 0.97002 * 119.99580 * 179.97438 * 13 12 10 33 33 H 1.07993 * 120.08509 * 180.02562 * 18 9 8 34 34 H 1.08005 * 119.91617 * 180.02562 * 19 18 9 35 35 H 1.08999 * 112.85281 * 290.33786 * 20 2 1 36 36 H 1.09000 * 113.61408 * 334.57487 * 21 20 2 37 37 H 1.08997 * 113.61107 * 105.47437 * 21 20 2 38 38 H 1.08996 * 113.54049 * 270.81093 * 22 21 20 39 39 H 1.08999 * 113.74344 * 139.93951 * 22 21 20 40 40 H 1.08997 * 113.61358 * 220.09211 * 23 22 21 41 41 H 1.08999 * 113.61501 * 89.18696 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 1.6524 0.0354 2.4424 6 6 2.0058 -0.4272 3.7031 7 6 1.6345 0.2961 4.8375 8 6 1.9732 -0.1550 6.0788 9 6 2.7046 -1.3515 6.2142 10 6 3.0584 -1.8250 7.4959 11 1 3.9132 -2.4742 7.6148 12 6 2.3019 -1.4534 8.6121 13 7 1.0933 -0.9757 8.4541 14 14 3.0159 -1.6390 10.3282 15 1 4.3888 -2.1974 10.2354 16 1 3.0660 -0.3104 10.9898 17 1 2.1608 -2.5561 11.1236 18 6 3.0803 -2.0738 5.0644 19 6 2.7347 -1.6107 3.8295 20 6 2.0400 -0.7214 -1.2491 21 6 3.4867 -0.3578 -1.6230 22 6 3.0234 -0.3621 -3.0911 23 6 1.6121 -0.0510 -2.5654 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 3.1262 -0.7996 1.2057 28 1 1.6052 -1.7198 1.2953 29 1 1.1483 0.8592 2.3518 30 1 1.0732 1.2127 4.7321 31 1 1.6814 0.4033 6.9560 32 1 0.5685 -0.7184 9.2282 33 1 3.6407 -2.9919 5.1609 34 1 3.0216 -2.1635 2.9471 35 1 1.8519 -1.7948 -1.2245 36 1 3.7964 0.6243 -1.2657 37 1 4.2079 -1.1410 -1.3895 38 1 3.1055 -1.3375 -3.5706 39 1 3.4533 0.4412 -3.6893 40 1 0.8222 -0.5869 -3.0917 41 1 1.4082 1.0152 -2.4663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398852292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:10 Heat of formation + Delta-G solvation = 8.925616 kcal Electronic energy + Delta-G solvation = -18610.134978 eV Core-core repulsion = 15874.730445 eV Total energy + Delta-G solvation = -2735.404533 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.34977 -39.55732 -37.00438 -35.17975 -33.27770 -31.40823 -30.23372 -27.81854 -26.54602 -26.04884 -25.18695 -22.93102 -22.06988 -21.17631 -20.25601 -19.10450 -17.76216 -17.12809 -16.50345 -16.09527 -15.79281 -15.56324 -15.46088 -14.60149 -14.44257 -14.02968 -13.85738 -13.72677 -13.51766 -13.30027 -13.24355 -13.01014 -12.74591 -12.62175 -12.49338 -12.29117 -11.95495 -11.76253 -11.55910 -11.32483 -11.19029 -11.07453 -10.94528 -10.85353 -10.27542 -9.40147 -8.55143 -8.14858 -6.00310 1.09746 1.18760 1.40369 1.54804 1.58501 2.27893 2.83978 2.93292 3.67655 3.75673 3.85390 3.87241 4.02110 4.14310 4.37786 4.42538 4.46959 4.49930 4.61866 4.80994 4.88478 4.92751 4.93508 4.96716 5.01601 5.07238 5.13243 5.17475 5.19501 5.25451 5.33060 5.39936 5.43173 5.49434 5.69840 5.74552 5.77585 5.93307 6.18800 6.41666 6.68448 6.88955 7.08758 7.15009 7.32240 8.48714 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.054073 B = 0.003404 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.695651 B = 8223.008140 C = 8543.410916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 H 0.075 0.925 4 C 0.143 3.857 5 N -0.751 5.751 6 C 0.113 3.887 7 C -0.176 4.176 8 C -0.141 4.141 9 C 0.035 3.965 10 C -0.506 4.506 11 H 0.067 0.933 12 C 0.031 3.969 13 N -0.842 5.842 14 Si 0.977 3.023 15 H -0.261 1.261 16 H -0.266 1.266 17 H -0.268 1.268 18 C -0.198 4.198 19 C -0.168 4.168 20 C -0.104 4.104 21 C -0.143 4.143 22 C -0.139 4.139 23 C -0.129 4.129 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.394 0.606 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.282 0.718 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.010 3.126 -18.276 18.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 H 0.094 0.906 4 C 0.018 3.982 5 N -0.386 5.386 6 C 0.013 3.987 7 C -0.198 4.198 8 C -0.161 4.161 9 C 0.032 3.968 10 C -0.537 4.537 11 H 0.085 0.915 12 C -0.181 4.181 13 N -0.470 5.470 14 Si 0.799 3.201 15 H -0.185 1.185 16 H -0.191 1.191 17 H -0.193 1.193 18 C -0.218 4.218 19 C -0.191 4.191 20 C -0.123 4.123 21 C -0.180 4.180 22 C -0.177 4.177 23 C -0.166 4.166 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.228 0.772 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.132 3.051 -18.277 18.530 hybrid contribution -0.009 0.041 1.135 1.136 sum -0.140 3.092 -17.142 17.419 Atomic orbital electron populations 1.21760 0.94480 1.01825 1.01798 1.21251 0.96357 0.99451 0.92799 0.90642 1.21162 0.98122 0.94601 0.84291 1.43985 1.64608 1.28409 1.01586 1.17475 1.00368 0.95407 0.85453 1.20242 1.06399 1.01089 0.92050 1.20866 1.02694 0.96755 0.95770 1.17814 0.93746 0.91964 0.93268 1.19607 1.12653 1.29001 0.92457 0.91513 1.26625 0.93856 0.92631 1.04953 1.69929 1.08689 1.34709 1.33690 0.85237 0.79348 0.78861 0.76651 1.18477 1.19082 1.19325 1.20757 1.07937 1.00280 0.92853 1.20101 1.04754 0.97546 0.96652 1.22524 0.96482 0.99863 0.93384 1.23026 0.96252 1.01722 0.97050 1.22835 0.96676 1.02268 0.95883 1.22890 0.97182 1.01024 0.95500 0.93173 0.93434 0.91097 0.94005 0.94386 0.77172 0.87481 0.88142 0.90751 0.88746 0.87067 0.89389 0.90384 0.91945 0.89836 0.90976 0.90985 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.88 71.98 0.64 -2.11 16 2 C -0.08 -1.62 2.15 -10.79 -0.02 -1.64 16 3 H 0.08 1.51 7.98 -2.39 -0.02 1.50 16 4 C 0.14 3.96 4.26 86.38 0.37 4.33 16 5 N -0.75 -25.20 5.43 -338.99 -1.84 -27.04 16 6 C 0.11 4.92 6.67 38.67 0.26 5.18 16 7 C -0.18 -8.38 9.82 22.15 0.22 -8.16 16 8 C -0.14 -7.74 8.64 22.48 0.19 -7.55 16 9 C 0.03 1.99 5.57 -21.27 -0.12 1.87 16 10 C -0.51 -29.00 9.03 23.38 0.21 -28.79 16 11 H 0.07 3.73 7.91 -2.91 -0.02 3.70 16 12 C 0.03 1.66 5.13 85.22 0.44 2.10 16 13 N -0.84 -46.58 10.96 21.82 0.24 -46.34 16 14 Si 0.98 40.68 29.60 68.60 2.03 42.71 16 15 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 16 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 17 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 18 C -0.20 -10.25 9.74 22.48 0.22 -10.04 16 19 C -0.17 -7.70 9.23 22.15 0.20 -7.49 16 20 C -0.10 -1.79 3.11 -10.26 -0.03 -1.82 16 21 C -0.14 -2.40 7.58 31.18 0.24 -2.17 16 22 C -0.14 -1.90 8.09 31.18 0.25 -1.65 16 23 C -0.13 -1.79 6.75 31.12 0.21 -1.58 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.05 1.01 7.18 -2.39 -0.02 1.00 16 26 H 0.07 1.12 7.50 -2.39 -0.02 1.10 16 27 H 0.04 1.21 7.87 -2.39 -0.02 1.20 16 28 H 0.04 1.13 7.93 -2.38 -0.02 1.11 16 29 H 0.39 11.78 7.65 -92.71 -0.71 11.08 16 30 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 31 H 0.10 5.79 6.16 -2.91 -0.02 5.77 16 32 H 0.28 14.14 8.30 -92.71 -0.77 13.37 16 33 H 0.09 4.65 8.06 -2.91 -0.02 4.63 16 34 H 0.11 4.47 6.68 -2.91 -0.02 4.45 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.35 7.99 -2.39 -0.02 1.33 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 1.12 8.10 -2.39 -0.02 1.10 16 Total: -1.00 -61.75 328.17 3.99 -57.75 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 0.29 Total: 32.45 kcal Atomic # 6 Polarization: -62.80 SS G_CDS: 3.27 Total: -59.53 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -1.60 Total: -73.38 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -61.75 3.99 -57.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398852292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.679 kcal (2) G-P(sol) polarization free energy of solvation -61.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds