Wall clock time and date at job start Mon Mar 30 2020 06:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 115.54926 * 2 1 4 4 C 1.53072 * 117.48949 * 145.73034 * 2 1 3 5 5 C 1.52999 * 117.49591 * 214.33029 * 2 1 3 6 6 H 1.09005 * 117.49563 * 0.02594 * 5 2 1 7 7 C 1.52994 * 117.49772 * 145.02164 * 5 2 1 8 8 N 1.46902 * 109.46925 * 184.91143 * 7 5 2 9 9 C 1.46899 * 110.99911 * 66.04908 * 8 7 5 10 10 C 1.46905 * 110.99768 * 189.99807 * 8 7 5 11 11 C 1.50707 * 109.46867 * 170.00133 * 10 8 7 12 12 C 1.38634 * 119.74709 * 90.00231 * 11 10 8 13 13 C 1.37623 * 120.24529 * 180.02562 * 12 11 10 14 14 C 1.40714 * 119.74572 * 359.97438 * 13 12 11 15 15 C 1.41396 * 120.24342 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99651 * 335.04313 * 15 14 13 17 17 C 1.39943 * 120.00035 * 155.03641 * 15 14 13 18 18 N 1.30828 * 120.00220 * 334.24442 * 17 15 14 19 19 Si 1.86799 * 119.99843 * 154.23614 * 17 15 14 20 20 H 1.48501 * 109.47045 * 60.00622 * 19 17 15 21 21 H 1.48500 * 109.47065 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47438 * 300.00276 * 19 17 15 23 23 C 1.40714 * 119.51125 * 0.27753 * 14 13 12 24 24 C 1.37616 * 119.74400 * 359.46942 * 23 14 13 25 25 H 1.08997 * 109.47397 * 205.67143 * 1 2 3 26 26 H 1.09001 * 109.46728 * 325.66821 * 1 2 3 27 27 H 1.09001 * 109.46832 * 85.66660 * 1 2 3 28 28 H 1.09001 * 117.49625 * 359.97438 * 4 2 1 29 29 H 1.09004 * 117.51148 * 214.96111 * 4 2 1 30 30 H 1.09001 * 109.47353 * 64.91706 * 7 5 2 31 31 H 1.08998 * 109.47497 * 304.90834 * 7 5 2 32 32 H 1.09003 * 109.47349 * 183.95152 * 9 8 7 33 33 H 1.09000 * 109.47092 * 303.94978 * 9 8 7 34 34 H 1.09003 * 109.47257 * 63.95418 * 9 8 7 35 35 H 1.08999 * 109.46778 * 50.00774 * 10 8 7 36 36 H 1.08998 * 109.47497 * 289.99977 * 10 8 7 37 37 H 1.08000 * 119.87913 * 359.97349 * 12 11 10 38 38 H 1.08000 * 120.12246 * 180.02562 * 13 12 11 39 39 H 0.96995 * 119.99609 * 354.23082 * 18 17 15 40 40 H 1.07998 * 120.12829 * 179.70997 * 23 14 13 41 41 H 1.08003 * 119.87493 * 180.27921 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2366 -1.1222 0.7646 5 6 2.2364 -1.1208 -0.7654 6 1 1.6111 -1.8578 -1.2693 7 6 3.5489 -0.7755 -1.4717 8 7 4.0107 -1.9378 -2.2423 9 6 3.0886 -2.2379 -3.3457 10 6 5.3772 -1.7302 -2.7400 11 6 5.9064 -3.0218 -3.3083 12 6 5.7093 -3.3154 -4.6488 13 6 6.1878 -4.4922 -5.1783 14 6 6.8797 -5.3985 -4.3537 15 6 7.3762 -6.6103 -4.8869 16 1 6.9163 -7.0432 -5.7629 17 6 8.4634 -7.2485 -4.2794 18 7 9.3249 -6.5525 -3.5830 19 14 8.6846 -9.0942 -4.4629 20 1 8.8264 -9.4352 -5.9013 21 1 9.9032 -9.5220 -3.7299 22 1 7.4999 -9.7929 -3.9029 23 6 7.0691 -5.0923 -2.9934 24 6 6.5866 -3.9073 -2.4866 25 1 -0.3634 -0.9262 0.4452 26 1 -0.3633 0.8487 0.5796 27 1 -0.3633 0.0777 -1.0247 28 1 1.6112 -1.8597 1.2677 29 1 3.1719 -0.8771 1.2680 30 1 4.3018 -0.5092 -0.7298 31 1 3.3887 0.0664 -2.1451 32 1 3.4157 -3.1435 -3.8566 33 1 2.0842 -2.3871 -2.9494 34 1 3.0815 -1.4060 -4.0499 35 1 6.0171 -1.4050 -1.9197 36 1 5.3685 -0.9674 -3.5185 37 1 5.1776 -2.6185 -5.2796 38 1 6.0335 -4.7187 -6.2229 39 1 9.2583 -5.5852 -3.5564 40 1 7.5946 -5.7828 -2.3504 41 1 6.7348 -3.6682 -1.4438 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398952965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:06 Heat of formation + Delta-G solvation = 28.932627 kcal Electronic energy + Delta-G solvation = -18647.696444 eV Core-core repulsion = 15913.159480 eV Total energy + Delta-G solvation = -2734.536964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.75150 -37.79984 -36.04262 -33.77644 -30.47154 -29.49052 -28.90964 -27.16175 -26.66675 -24.39938 -22.18481 -21.04674 -20.83370 -20.09783 -19.77117 -17.87979 -15.77185 -15.32476 -15.06701 -14.66519 -14.24606 -14.13236 -13.87078 -13.65971 -13.24092 -13.05295 -12.51217 -12.29586 -12.14602 -11.95763 -11.88317 -11.55619 -11.43721 -11.36059 -11.04146 -11.00740 -10.63863 -10.39709 -10.37256 -9.98003 -9.77383 -9.57139 -9.42520 -8.93756 -7.95202 -7.62979 -7.43636 -7.14056 -4.39880 2.73979 2.92396 3.17336 3.26662 3.38117 3.67266 4.04497 4.24482 4.60835 4.74007 4.80913 4.92767 5.15857 5.40819 5.46138 5.51305 5.57881 5.64034 5.66873 5.70618 5.77746 5.79523 5.85826 5.92549 6.02598 6.13829 6.17298 6.26358 6.28414 6.34483 6.41281 6.81755 7.05449 7.19349 7.39847 7.43563 7.46523 7.74434 7.81709 7.85815 8.03413 8.24394 8.36431 8.80218 8.93359 10.08333 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037689 B = 0.003606 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.746389 B = 7762.388697 C = 7936.645368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.162 4.162 3 H 0.100 0.900 4 C -0.170 4.170 5 C -0.138 4.138 6 H 0.107 0.893 7 C 0.084 3.916 8 N -0.533 5.533 9 C 0.026 3.974 10 C 0.121 3.879 11 C -0.218 4.218 12 C -0.072 4.072 13 C -0.231 4.231 14 C 0.100 3.900 15 C -0.525 4.525 16 H 0.074 0.926 17 C 0.039 3.961 18 N -0.798 5.798 19 Si 1.064 2.936 20 H -0.277 1.277 21 H -0.274 1.274 22 H -0.275 1.275 23 C -0.223 4.223 24 C -0.059 4.059 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.015 0.985 35 H 0.064 0.936 36 H 0.022 0.978 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.299 0.701 40 H 0.104 0.896 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.801 9.243 4.839 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.180 4.180 3 H 0.118 0.882 4 C -0.207 4.207 5 C -0.156 4.156 6 H 0.125 0.875 7 C -0.044 4.044 8 N -0.256 5.256 9 C -0.122 4.122 10 C -0.005 4.005 11 C -0.220 4.220 12 C -0.091 4.091 13 C -0.250 4.250 14 C 0.097 3.903 15 C -0.553 4.553 16 H 0.092 0.908 17 C -0.183 4.183 18 N -0.421 5.421 19 Si 0.888 3.112 20 H -0.202 1.202 21 H -0.199 1.199 22 H -0.200 1.200 23 C -0.242 4.242 24 C -0.078 4.078 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.034 0.966 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.789 7.606 5.657 13.626 hybrid contribution -1.004 2.041 -1.031 2.498 sum -10.793 9.648 4.626 15.197 Atomic orbital electron populations 1.21339 0.93045 1.01739 1.01642 1.22415 0.95091 0.94643 1.05901 0.88207 1.23150 1.02240 1.00771 0.94519 1.22424 0.98419 1.00894 0.93871 0.87465 1.21665 0.94623 0.91586 0.96528 1.62058 1.02599 1.36722 1.24265 1.22409 0.96141 1.01047 0.92627 1.20719 0.87796 0.95022 0.96939 1.18785 1.10642 0.98454 0.94113 1.20399 0.98431 0.96224 0.94056 1.20889 1.10226 0.95952 0.97958 1.17669 0.89974 0.91514 0.91138 1.20560 1.15017 1.06095 1.13604 0.90814 1.26993 0.91917 1.07826 0.91522 1.70450 1.30480 1.11856 1.29283 0.83654 0.77402 0.72687 0.77457 1.20203 1.19894 1.20003 1.21132 1.09320 0.98333 0.95401 1.20415 0.96479 0.94008 0.96850 0.92590 0.92411 0.92399 0.89045 0.88957 0.91127 0.95201 0.90260 0.92265 0.96608 0.91785 0.95945 0.89797 0.89130 0.88724 0.87822 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.19 37.16 0.38 -0.65 16 2 C -0.16 -1.61 6.13 -90.58 -0.56 -2.17 16 3 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.17 -1.84 9.83 -26.69 -0.26 -2.10 16 5 C -0.14 -1.65 5.39 -90.62 -0.49 -2.14 16 6 H 0.11 1.37 6.36 -51.93 -0.33 1.04 16 7 C 0.08 1.13 5.24 -3.83 -0.02 1.11 16 8 N -0.53 -8.76 4.75 -244.36 -1.16 -9.92 16 9 C 0.03 0.40 8.95 60.06 0.54 0.94 16 10 C 0.12 2.17 5.11 -4.97 -0.03 2.14 16 11 C -0.22 -4.71 4.91 -104.33 -0.51 -5.22 16 12 C -0.07 -1.60 7.92 -39.66 -0.31 -1.92 16 13 C -0.23 -5.70 9.80 -38.87 -0.38 -6.08 16 14 C 0.10 2.68 5.30 -106.83 -0.57 2.11 16 15 C -0.52 -14.15 8.98 -37.74 -0.34 -14.49 16 16 H 0.07 1.94 7.96 -52.49 -0.42 1.52 16 17 C 0.04 1.01 4.93 -17.34 -0.09 0.92 16 18 N -0.80 -21.46 12.31 55.55 0.68 -20.77 16 19 Si 1.06 21.84 30.00 -169.99 -5.10 16.74 16 20 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 C -0.22 -5.77 7.96 -38.87 -0.31 -6.08 16 24 C -0.06 -1.37 9.67 -39.66 -0.38 -1.75 16 25 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 29 H 0.09 0.98 8.03 -51.93 -0.42 0.57 16 30 H 0.07 0.92 7.66 -51.93 -0.40 0.53 16 31 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.08 1.42 6.16 -51.93 -0.32 1.10 16 33 H 0.06 0.82 6.22 -51.93 -0.32 0.50 16 34 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 1.09 7.87 -51.93 -0.41 0.68 16 36 H 0.02 0.38 8.06 -51.93 -0.42 -0.03 16 37 H 0.08 1.66 8.02 -52.49 -0.42 1.24 16 38 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.30 8.26 6.70 -40.82 -0.27 7.98 16 40 H 0.10 2.79 6.49 -52.49 -0.34 2.45 16 41 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 330.99 15.07 4.99 4.99 Total: -1.00 -27.28 330.99 -10.57 -37.84 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.65 Total: 6.50 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: -3.33 Total: -35.38 kcal Atomic # 7 Polarization: -30.21 SS G_CDS: -0.48 Total: -30.69 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.10 Total: 16.74 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.28 -10.57 -37.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398952965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.775 kcal (2) G-P(sol) polarization free energy of solvation -27.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds