Wall clock time and date at job start Mon Mar 30 2020 06:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 115.54926 * 2 1 4 4 C 1.53072 * 117.48949 * 145.73034 * 2 1 3 5 5 C 1.52999 * 117.49591 * 214.33029 * 2 1 3 6 6 H 1.09005 * 117.49563 * 0.02594 * 5 2 1 7 7 C 1.52994 * 117.49772 * 145.02164 * 5 2 1 8 8 N 1.46902 * 109.46925 * 184.91143 * 7 5 2 9 9 C 1.46899 * 110.99911 * 66.04908 * 8 7 5 10 10 C 1.46905 * 110.99768 * 189.99807 * 8 7 5 11 11 C 1.50707 * 109.46867 * 170.00133 * 10 8 7 12 12 C 1.38634 * 119.74709 * 90.00231 * 11 10 8 13 13 C 1.37623 * 120.24529 * 180.02562 * 12 11 10 14 14 C 1.40714 * 119.74572 * 359.97438 * 13 12 11 15 15 C 1.41396 * 120.24342 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99651 * 335.04313 * 15 14 13 17 17 C 1.39943 * 120.00035 * 155.03641 * 15 14 13 18 18 N 1.30828 * 120.00220 * 334.24442 * 17 15 14 19 19 Si 1.86799 * 119.99843 * 154.23614 * 17 15 14 20 20 H 1.48501 * 109.47045 * 60.00622 * 19 17 15 21 21 H 1.48500 * 109.47065 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47438 * 300.00276 * 19 17 15 23 23 C 1.40714 * 119.51125 * 0.27753 * 14 13 12 24 24 C 1.37616 * 119.74400 * 359.46942 * 23 14 13 25 25 H 1.08997 * 109.47397 * 205.67143 * 1 2 3 26 26 H 1.09001 * 109.46728 * 325.66821 * 1 2 3 27 27 H 1.09001 * 109.46832 * 85.66660 * 1 2 3 28 28 H 1.09001 * 117.49625 * 359.97438 * 4 2 1 29 29 H 1.09004 * 117.51148 * 214.96111 * 4 2 1 30 30 H 1.09001 * 109.47353 * 64.91706 * 7 5 2 31 31 H 1.08998 * 109.47497 * 304.90834 * 7 5 2 32 32 H 1.09003 * 109.47349 * 183.95152 * 9 8 7 33 33 H 1.09000 * 109.47092 * 303.94978 * 9 8 7 34 34 H 1.09003 * 109.47257 * 63.95418 * 9 8 7 35 35 H 1.08999 * 109.46778 * 50.00774 * 10 8 7 36 36 H 1.08998 * 109.47497 * 289.99977 * 10 8 7 37 37 H 1.08000 * 119.87913 * 359.97349 * 12 11 10 38 38 H 1.08000 * 120.12246 * 180.02562 * 13 12 11 39 39 H 0.96995 * 119.99609 * 354.23082 * 18 17 15 40 40 H 1.07998 * 120.12829 * 179.70997 * 23 14 13 41 41 H 1.08003 * 119.87493 * 180.27921 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2366 -1.1222 0.7646 5 6 2.2364 -1.1208 -0.7654 6 1 1.6111 -1.8578 -1.2693 7 6 3.5489 -0.7755 -1.4717 8 7 4.0107 -1.9378 -2.2423 9 6 3.0886 -2.2379 -3.3457 10 6 5.3772 -1.7302 -2.7400 11 6 5.9064 -3.0218 -3.3083 12 6 5.7093 -3.3154 -4.6488 13 6 6.1878 -4.4922 -5.1783 14 6 6.8797 -5.3985 -4.3537 15 6 7.3762 -6.6103 -4.8869 16 1 6.9163 -7.0432 -5.7629 17 6 8.4634 -7.2485 -4.2794 18 7 9.3249 -6.5525 -3.5830 19 14 8.6846 -9.0942 -4.4629 20 1 8.8264 -9.4352 -5.9013 21 1 9.9032 -9.5220 -3.7299 22 1 7.4999 -9.7929 -3.9029 23 6 7.0691 -5.0923 -2.9934 24 6 6.5866 -3.9073 -2.4866 25 1 -0.3634 -0.9262 0.4452 26 1 -0.3633 0.8487 0.5796 27 1 -0.3633 0.0777 -1.0247 28 1 1.6112 -1.8597 1.2677 29 1 3.1719 -0.8771 1.2680 30 1 4.3018 -0.5092 -0.7298 31 1 3.3887 0.0664 -2.1451 32 1 3.4157 -3.1435 -3.8566 33 1 2.0842 -2.3871 -2.9494 34 1 3.0815 -1.4060 -4.0499 35 1 6.0171 -1.4050 -1.9197 36 1 5.3685 -0.9674 -3.5185 37 1 5.1776 -2.6185 -5.2796 38 1 6.0335 -4.7187 -6.2229 39 1 9.2583 -5.5852 -3.5564 40 1 7.5946 -5.7828 -2.3504 41 1 6.7348 -3.6682 -1.4438 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398952965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:06 Heat of formation + Delta-G solvation = 16.024427 kcal Electronic energy + Delta-G solvation = -18648.256185 eV Core-core repulsion = 15913.159480 eV Total energy + Delta-G solvation = -2735.096705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.12851 -39.20889 -37.37730 -35.59384 -32.18475 -31.29120 -29.93730 -28.71366 -27.81336 -26.03582 -23.60977 -22.94269 -21.82209 -21.41702 -21.02000 -19.82863 -16.94887 -16.61279 -16.48992 -16.34898 -15.80063 -15.71030 -15.34060 -14.84601 -14.46989 -14.17431 -13.97609 -13.89338 -13.64164 -13.30777 -13.11385 -13.02268 -12.67767 -12.62789 -12.50165 -12.25685 -12.11769 -11.98592 -11.85122 -11.46069 -11.29911 -10.86466 -10.82580 -10.62087 -9.57287 -9.44570 -9.13796 -9.11615 -6.43535 0.88837 0.97631 1.49966 1.62950 1.79663 2.33665 2.60356 2.81788 3.19299 3.62757 3.77925 3.95419 4.04425 4.18847 4.21547 4.40602 4.42802 4.43803 4.49441 4.50163 4.60854 4.69926 4.78582 4.82492 4.88791 4.93938 4.96348 4.98346 5.08446 5.14210 5.19700 5.26446 5.33191 5.45765 5.47170 5.75778 5.80851 5.85866 6.05919 6.20590 6.27455 6.29121 6.43287 6.82163 6.96593 8.05108 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037689 B = 0.003606 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.746389 B = 7762.388697 C = 7936.645368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.145 4.145 3 H 0.109 0.891 4 C -0.174 4.174 5 C -0.153 4.153 6 H 0.099 0.901 7 C 0.089 3.911 8 N -0.548 5.548 9 C 0.029 3.971 10 C 0.125 3.875 11 C -0.200 4.200 12 C -0.069 4.069 13 C -0.246 4.246 14 C 0.070 3.930 15 C -0.564 4.564 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.820 5.820 19 Si 1.116 2.884 20 H -0.257 1.257 21 H -0.270 1.270 22 H -0.265 1.265 23 C -0.240 4.240 24 C -0.066 4.066 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.283 0.717 40 H 0.084 0.916 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.335 10.735 5.350 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.164 4.164 3 H 0.127 0.873 4 C -0.211 4.211 5 C -0.172 4.172 6 H 0.117 0.883 7 C -0.039 4.039 8 N -0.272 5.272 9 C -0.119 4.119 10 C -0.001 4.001 11 C -0.201 4.201 12 C -0.087 4.087 13 C -0.265 4.265 14 C 0.067 3.933 15 C -0.592 4.592 16 H 0.087 0.913 17 C -0.213 4.213 18 N -0.443 5.443 19 Si 0.933 3.067 20 H -0.181 1.181 21 H -0.195 1.195 22 H -0.190 1.190 23 C -0.259 4.259 24 C -0.085 4.085 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.132 0.868 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.343 9.126 6.164 15.810 hybrid contribution -0.672 1.791 -1.145 2.230 sum -12.015 10.918 5.019 16.993 Atomic orbital electron populations 1.21372 0.91964 1.02384 1.02116 1.22504 0.95891 0.94357 1.03634 0.87337 1.23218 1.02654 1.01510 0.93748 1.22345 0.98122 1.02304 0.94386 0.88342 1.21676 0.95307 0.90566 0.96337 1.61943 1.01946 1.38680 1.24629 1.22361 0.96694 1.00211 0.92650 1.20654 0.88965 0.92822 0.97686 1.19257 1.07994 0.99174 0.93697 1.20694 0.97609 0.95664 0.94752 1.21099 1.10493 0.96769 0.98165 1.17989 0.91058 0.92334 0.91882 1.20751 1.16380 1.07433 1.14632 0.91300 1.28421 0.90929 1.11644 0.90261 1.70567 1.31539 1.10867 1.31327 0.83025 0.77657 0.67420 0.78579 1.18150 1.19495 1.19002 1.21087 1.10313 0.99363 0.95151 1.20669 0.96340 0.93463 0.98039 0.92643 0.91016 0.92128 0.88787 0.88851 0.90761 0.94278 0.92897 0.90689 0.95340 0.90727 0.94530 0.86827 0.88812 0.90521 0.89792 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 10.19 71.98 0.73 -0.99 16 2 C -0.15 -2.47 6.13 -10.77 -0.07 -2.54 16 3 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 4 C -0.17 -3.38 9.83 30.62 0.30 -3.08 16 5 C -0.15 -3.30 5.39 -10.80 -0.06 -3.36 16 6 H 0.10 2.30 6.36 -2.38 -0.02 2.29 16 7 C 0.09 2.12 5.24 86.30 0.45 2.57 16 8 N -0.55 -16.60 4.75 -927.03 -4.41 -21.01 16 9 C 0.03 0.83 8.95 127.69 1.14 1.98 16 10 C 0.13 4.13 5.11 85.56 0.44 4.57 16 11 C -0.20 -8.34 4.91 -19.67 -0.10 -8.43 16 12 C -0.07 -2.96 7.92 22.22 0.18 -2.79 16 13 C -0.25 -12.29 9.80 22.73 0.22 -12.07 16 14 C 0.07 3.87 5.30 -21.29 -0.11 3.76 16 15 C -0.56 -31.59 8.98 23.46 0.21 -31.38 16 16 H 0.07 3.77 7.96 -2.91 -0.02 3.75 16 17 C 0.00 0.17 4.93 85.26 0.42 0.59 16 18 N -0.82 -45.80 12.31 21.83 0.27 -45.53 16 19 Si 1.12 44.58 30.00 68.60 2.06 46.64 16 20 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 21 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 23 C -0.24 -12.84 7.96 22.73 0.18 -12.66 16 24 C -0.07 -3.09 9.67 22.22 0.21 -2.88 16 25 H 0.05 0.79 7.90 -2.39 -0.02 0.77 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 1.76 8.05 -2.39 -0.02 1.74 16 29 H 0.09 1.78 8.03 -2.38 -0.02 1.76 16 30 H 0.07 1.72 7.66 -2.39 -0.02 1.70 16 31 H 0.04 0.87 8.12 -2.39 -0.02 0.86 16 32 H 0.05 1.80 6.16 -2.39 -0.01 1.79 16 33 H 0.07 1.91 6.22 -2.39 -0.01 1.90 16 34 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 2.32 7.87 -2.39 -0.02 2.30 16 36 H 0.04 1.12 8.06 -2.39 -0.02 1.10 16 37 H 0.11 4.21 8.02 -2.91 -0.02 4.18 16 38 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.28 16.42 6.70 -92.71 -0.62 15.80 16 40 H 0.08 4.75 6.49 -2.91 -0.02 4.73 16 41 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -60.10 330.99 3.21 -56.89 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 1.13 Total: 29.72 kcal Atomic # 6 Polarization: -70.86 SS G_CDS: 4.16 Total: -66.70 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -4.14 Total: -66.54 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.06 Total: 46.64 kcal Total: -60.10 3.21 -56.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398952965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.914 kcal (2) G-P(sol) polarization free energy of solvation -60.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds