Wall clock time and date at job start Mon Mar 30 2020 06:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.46919 * 2 1 4 4 C 1.53008 * 109.47068 * 119.99637 * 2 1 3 5 5 C 1.52989 * 109.47161 * 185.00056 * 4 2 1 6 6 C 1.53002 * 117.49897 * 243.62159 * 5 4 2 7 7 C 1.53004 * 60.00039 * 252.50959 * 6 5 4 8 8 N 1.46897 * 109.47118 * 239.99473 * 2 1 3 9 9 C 1.46903 * 110.99967 * 85.00390 * 8 2 1 10 10 C 1.50692 * 109.47180 * 180.02562 * 9 8 2 11 11 C 1.38636 * 119.74649 * 269.72386 * 10 9 8 12 12 C 1.37624 * 120.24708 * 179.71995 * 11 10 9 13 13 C 1.40716 * 119.74304 * 0.57557 * 12 11 10 14 14 C 1.41394 * 120.24523 * 179.67937 * 13 12 11 15 15 H 1.08003 * 119.99747 * 24.40574 * 14 13 12 16 16 C 1.39941 * 120.00471 * 204.40404 * 14 13 12 17 17 N 1.30823 * 119.99883 * 17.86259 * 16 14 13 18 18 Si 1.86798 * 120.00195 * 197.86847 * 16 14 13 19 19 H 1.48499 * 109.47406 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47047 * 119.99998 * 18 16 14 21 21 H 1.48497 * 109.46960 * 239.99515 * 18 16 14 22 22 C 1.40711 * 119.51097 * 359.69856 * 13 12 11 23 23 C 1.37616 * 119.74747 * 0.02562 * 22 13 12 24 24 H 1.09003 * 109.47469 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47615 * 300.00435 * 1 2 3 26 26 H 1.09002 * 109.47012 * 60.00303 * 1 2 3 27 27 H 1.09001 * 109.47067 * 305.00167 * 4 2 1 28 28 H 1.09001 * 109.46613 * 64.99779 * 4 2 1 29 29 H 1.09007 * 115.55325 * 29.33293 * 5 4 2 30 30 H 1.08995 * 117.49836 * 359.97438 * 6 5 4 31 31 H 1.09000 * 117.49797 * 145.01945 * 6 5 4 32 32 H 1.09000 * 117.49885 * 252.51324 * 7 6 5 33 33 H 1.08996 * 117.51692 * 107.48287 * 7 6 5 34 34 H 1.00906 * 110.99841 * 208.95175 * 8 2 1 35 35 H 1.09006 * 109.46807 * 299.99973 * 9 8 2 36 36 H 1.08995 * 109.46977 * 59.99448 * 9 8 2 37 37 H 1.07994 * 119.87993 * 359.97438 * 11 10 9 38 38 H 1.07999 * 120.12745 * 180.27499 * 12 11 10 39 39 H 0.97002 * 120.00621 * 180.02562 * 17 16 14 40 40 H 1.08007 * 120.12572 * 179.97438 * 22 13 12 41 41 H 1.08001 * 119.87767 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5647 -0.6132 1.3138 6 6 4.3694 -1.9112 1.2207 7 6 4.2606 -1.1727 2.5563 8 7 2.0196 -0.6926 -1.1993 9 6 2.0825 0.2224 -2.3469 10 6 2.5873 -0.5220 -3.5559 11 6 3.9480 -0.5668 -3.8175 12 6 4.4208 -1.2485 -4.9156 13 6 3.5163 -1.8914 -5.7808 14 6 3.9899 -2.5892 -6.9158 15 1 4.9993 -2.9732 -6.9312 16 6 3.1510 -2.7822 -8.0190 17 7 2.0801 -2.0448 -8.1634 18 14 3.5600 -4.0929 -9.2855 19 1 4.8150 -4.7841 -8.8951 20 1 2.4517 -5.0790 -9.3531 21 1 3.7387 -3.4573 -10.6156 22 6 2.1370 -1.8345 -5.5085 23 6 1.6872 -1.1518 -4.4015 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -0.2616 2.1370 28 1 1.7515 -1.7715 1.2057 29 1 3.9927 0.2786 0.8559 30 1 3.8125 -2.8421 1.1139 31 1 5.3269 -1.8736 0.7013 32 1 5.1466 -0.6491 2.9155 33 1 3.6322 -1.6173 3.3279 34 1 2.9173 -1.1206 -1.0286 35 1 1.0871 0.6162 -2.5525 36 1 2.7588 1.0460 -2.1182 37 1 4.6400 -0.0682 -3.1550 38 1 5.4816 -1.2858 -5.1151 39 1 1.4982 -2.1787 -8.9279 40 1 1.4339 -2.3241 -6.1662 41 1 0.6289 -1.1064 -4.1907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398974881.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:27 Heat of formation + Delta-G solvation = 21.733242 kcal Electronic energy + Delta-G solvation = -18671.261045 eV Core-core repulsion = 15936.411893 eV Total energy + Delta-G solvation = -2734.849152 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.49317 -37.52378 -35.77906 -33.76029 -31.61217 -29.37447 -28.99589 -27.45737 -25.94632 -23.11688 -22.38923 -20.97136 -20.87536 -20.18810 -19.76763 -17.25761 -16.10711 -15.38699 -15.17841 -14.94635 -14.48860 -14.05754 -13.77418 -13.32042 -12.98385 -12.54482 -12.47937 -12.12960 -11.93079 -11.85907 -11.75398 -11.56719 -11.46888 -11.12839 -11.06423 -10.89231 -10.80155 -10.40087 -10.32874 -10.09669 -9.93138 -9.53113 -9.32693 -9.09731 -7.95593 -7.39336 -7.26095 -6.72889 -4.31133 2.77314 3.09030 3.12475 3.14693 3.20554 3.72240 3.95710 4.48457 4.56107 4.77660 4.81731 4.96198 5.10014 5.32354 5.51380 5.55136 5.57296 5.75969 5.77016 5.86892 5.87150 5.88628 5.97784 6.04966 6.08150 6.13840 6.26004 6.32912 6.38536 6.46399 6.53111 7.00233 7.10916 7.34552 7.40915 7.53837 7.66164 7.84126 7.96887 8.10231 8.20696 8.34591 8.69187 8.93740 9.02507 10.21724 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.029699 B = 0.003986 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.572953 B = 7023.657668 C = 7550.995192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.083 3.917 3 H 0.036 0.964 4 C -0.090 4.090 5 C -0.156 4.156 6 C -0.176 4.176 7 C -0.184 4.184 8 N -0.679 5.679 9 C 0.124 3.876 10 C -0.211 4.211 11 C -0.086 4.086 12 C -0.228 4.228 13 C 0.112 3.888 14 C -0.464 4.464 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.793 5.793 18 Si 0.906 3.094 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.275 1.275 22 C -0.167 4.167 23 C -0.079 4.079 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.343 0.657 35 H 0.061 0.939 36 H 0.015 0.985 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.279 0.721 40 H 0.117 0.883 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.449 2.096 14.120 14.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 H 0.054 0.946 4 C -0.128 4.128 5 C -0.175 4.175 6 C -0.213 4.213 7 C -0.221 4.221 8 N -0.312 5.312 9 C -0.003 4.003 10 C -0.212 4.212 11 C -0.105 4.105 12 C -0.247 4.247 13 C 0.110 3.890 14 C -0.494 4.494 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.419 5.419 18 Si 0.730 3.270 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.201 1.201 22 C -0.187 4.187 23 C -0.098 4.098 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.162 0.838 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.135 0.865 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.267 1.906 13.791 13.980 hybrid contribution 0.965 0.057 -0.482 1.080 sum -0.302 1.963 13.309 13.456 Atomic orbital electron populations 1.21781 0.95010 1.02165 1.00744 1.21506 0.95590 0.95623 0.89984 0.94557 1.21387 0.92201 1.01688 0.97515 1.22360 0.94801 0.98012 1.02281 1.23058 1.02126 0.96085 1.00016 1.22935 1.02783 1.04773 0.91567 1.60697 1.33928 1.33297 1.03283 1.20588 0.98798 0.91985 0.88973 1.18912 0.93213 1.10153 0.98939 1.20345 0.93883 0.99307 0.96919 1.20922 0.97828 1.06155 0.99812 1.17619 0.91659 0.88560 0.91211 1.19619 0.99580 1.31395 0.98767 0.90520 1.25898 0.94130 0.95191 0.98898 1.69839 1.12040 1.32318 1.27687 0.86304 0.79772 0.81104 0.79780 1.18429 1.19705 1.20060 1.21314 0.96310 1.03617 0.97422 1.20494 0.96764 0.97723 0.94820 0.92115 0.93270 0.92707 0.91396 0.90905 0.88239 0.88475 0.88805 0.89163 0.89011 0.83806 0.92094 0.96638 0.90043 0.89234 0.90992 0.86549 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.41 37.16 0.35 -1.34 16 2 C 0.08 1.07 2.61 -67.71 -0.18 0.90 16 3 H 0.04 0.48 7.80 -51.93 -0.40 0.07 16 4 C -0.09 -1.00 5.09 -26.73 -0.14 -1.13 16 5 C -0.16 -1.70 4.69 -90.62 -0.42 -2.13 16 6 C -0.18 -1.90 9.95 -26.73 -0.27 -2.16 16 7 C -0.18 -1.75 10.25 -26.73 -0.27 -2.02 16 8 N -0.68 -10.90 6.30 -108.00 -0.68 -11.58 16 9 C 0.12 2.24 5.60 -4.98 -0.03 2.22 16 10 C -0.21 -4.63 5.41 -104.33 -0.56 -5.19 16 11 C -0.09 -1.93 9.67 -39.66 -0.38 -2.32 16 12 C -0.23 -5.67 9.80 -38.87 -0.38 -6.05 16 13 C 0.11 3.03 5.58 -106.83 -0.60 2.44 16 14 C -0.46 -12.50 9.05 -37.74 -0.34 -12.84 16 15 H 0.08 1.99 7.91 -52.48 -0.41 1.58 16 16 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 17 N -0.79 -20.77 10.95 55.55 0.61 -20.16 16 18 Si 0.91 18.86 29.60 -169.99 -5.03 13.82 16 19 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 22 C -0.17 -4.42 8.70 -38.88 -0.34 -4.76 16 23 C -0.08 -1.89 9.67 -39.66 -0.38 -2.27 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.71 7.45 -51.93 -0.39 0.32 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.85 7.88 -51.93 -0.41 0.44 16 29 H 0.10 1.14 8.08 -51.92 -0.42 0.72 16 30 H 0.10 1.06 8.03 -51.93 -0.42 0.64 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.34 5.56 7.18 -39.29 -0.28 5.28 16 35 H 0.06 1.09 7.37 -51.93 -0.38 0.70 16 36 H 0.02 0.27 7.99 -51.93 -0.42 -0.15 16 37 H 0.08 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 40 H 0.12 3.19 6.16 -52.48 -0.32 2.86 16 41 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -27.02 335.94 -10.87 -37.89 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.79 Total: 9.78 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: -4.03 Total: -34.82 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: -0.07 Total: -31.74 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.02 -10.87 -37.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398974881.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.625 kcal (2) G-P(sol) polarization free energy of solvation -27.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds