Wall clock time and date at job start Mon Mar 30 2020 06:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.46919 * 2 1 4 4 C 1.53008 * 109.47068 * 119.99637 * 2 1 3 5 5 C 1.52989 * 109.47161 * 185.00056 * 4 2 1 6 6 C 1.53002 * 117.49897 * 243.62159 * 5 4 2 7 7 C 1.53004 * 60.00039 * 252.50959 * 6 5 4 8 8 N 1.46897 * 109.47118 * 239.99473 * 2 1 3 9 9 C 1.46903 * 110.99967 * 85.00390 * 8 2 1 10 10 C 1.50692 * 109.47180 * 180.02562 * 9 8 2 11 11 C 1.38636 * 119.74649 * 269.72386 * 10 9 8 12 12 C 1.37624 * 120.24708 * 179.71995 * 11 10 9 13 13 C 1.40716 * 119.74304 * 0.57557 * 12 11 10 14 14 C 1.41394 * 120.24523 * 179.67937 * 13 12 11 15 15 H 1.08003 * 119.99747 * 24.40574 * 14 13 12 16 16 C 1.39941 * 120.00471 * 204.40404 * 14 13 12 17 17 N 1.30823 * 119.99883 * 17.86259 * 16 14 13 18 18 Si 1.86798 * 120.00195 * 197.86847 * 16 14 13 19 19 H 1.48499 * 109.47406 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47047 * 119.99998 * 18 16 14 21 21 H 1.48497 * 109.46960 * 239.99515 * 18 16 14 22 22 C 1.40711 * 119.51097 * 359.69856 * 13 12 11 23 23 C 1.37616 * 119.74747 * 0.02562 * 22 13 12 24 24 H 1.09003 * 109.47469 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47615 * 300.00435 * 1 2 3 26 26 H 1.09002 * 109.47012 * 60.00303 * 1 2 3 27 27 H 1.09001 * 109.47067 * 305.00167 * 4 2 1 28 28 H 1.09001 * 109.46613 * 64.99779 * 4 2 1 29 29 H 1.09007 * 115.55325 * 29.33293 * 5 4 2 30 30 H 1.08995 * 117.49836 * 359.97438 * 6 5 4 31 31 H 1.09000 * 117.49797 * 145.01945 * 6 5 4 32 32 H 1.09000 * 117.49885 * 252.51324 * 7 6 5 33 33 H 1.08996 * 117.51692 * 107.48287 * 7 6 5 34 34 H 1.00906 * 110.99841 * 208.95175 * 8 2 1 35 35 H 1.09006 * 109.46807 * 299.99973 * 9 8 2 36 36 H 1.08995 * 109.46977 * 59.99448 * 9 8 2 37 37 H 1.07994 * 119.87993 * 359.97438 * 11 10 9 38 38 H 1.07999 * 120.12745 * 180.27499 * 12 11 10 39 39 H 0.97002 * 120.00621 * 180.02562 * 17 16 14 40 40 H 1.08007 * 120.12572 * 179.97438 * 22 13 12 41 41 H 1.08001 * 119.87767 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5647 -0.6132 1.3138 6 6 4.3694 -1.9112 1.2207 7 6 4.2606 -1.1727 2.5563 8 7 2.0196 -0.6926 -1.1993 9 6 2.0825 0.2224 -2.3469 10 6 2.5873 -0.5220 -3.5559 11 6 3.9480 -0.5668 -3.8175 12 6 4.4208 -1.2485 -4.9156 13 6 3.5163 -1.8914 -5.7808 14 6 3.9899 -2.5892 -6.9158 15 1 4.9993 -2.9732 -6.9312 16 6 3.1510 -2.7822 -8.0190 17 7 2.0801 -2.0448 -8.1634 18 14 3.5600 -4.0929 -9.2855 19 1 4.8150 -4.7841 -8.8951 20 1 2.4517 -5.0790 -9.3531 21 1 3.7387 -3.4573 -10.6156 22 6 2.1370 -1.8345 -5.5085 23 6 1.6872 -1.1518 -4.4015 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -0.2616 2.1370 28 1 1.7515 -1.7715 1.2057 29 1 3.9927 0.2786 0.8559 30 1 3.8125 -2.8421 1.1139 31 1 5.3269 -1.8736 0.7013 32 1 5.1466 -0.6491 2.9155 33 1 3.6322 -1.6173 3.3279 34 1 2.9173 -1.1206 -1.0286 35 1 1.0871 0.6162 -2.5525 36 1 2.7588 1.0460 -2.1182 37 1 4.6400 -0.0682 -3.1550 38 1 5.4816 -1.2858 -5.1151 39 1 1.4982 -2.1787 -8.9279 40 1 1.4339 -2.3241 -6.1662 41 1 0.6289 -1.1064 -4.1907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398974881.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:27 Heat of formation + Delta-G solvation = 9.025380 kcal Electronic energy + Delta-G solvation = -18671.812100 eV Core-core repulsion = 15936.411893 eV Total energy + Delta-G solvation = -2735.400207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.78133 -39.01127 -36.96409 -35.54532 -33.11242 -31.22064 -30.69357 -28.37949 -27.65742 -24.76150 -23.18706 -22.83904 -21.91278 -21.59892 -21.08571 -19.20844 -17.25362 -17.13732 -16.34214 -16.14391 -15.77749 -15.60958 -15.35466 -14.93924 -14.36410 -13.96614 -13.79197 -13.57056 -13.43027 -13.28998 -13.01480 -12.92117 -12.73792 -12.52417 -12.34707 -12.30247 -12.06810 -11.92389 -11.79029 -11.36834 -11.21927 -11.00820 -10.95914 -10.74377 -9.32987 -9.30527 -9.10000 -8.62640 -6.31811 0.96303 1.16796 1.38054 1.50300 1.53624 2.21480 2.71082 2.92004 3.44443 3.69805 3.83208 3.96799 4.10616 4.19943 4.30664 4.35134 4.43838 4.58064 4.59897 4.65832 4.69029 4.81470 4.82039 4.92136 5.02108 5.07530 5.07663 5.10278 5.16902 5.18343 5.28865 5.39838 5.40532 5.47620 5.48712 5.73096 5.97308 6.12195 6.24435 6.35289 6.41052 6.64186 6.73092 6.96084 7.06326 8.34702 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.029699 B = 0.003986 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.572953 B = 7023.657668 C = 7550.995192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.083 3.917 3 H 0.041 0.959 4 C -0.083 4.083 5 C -0.163 4.163 6 C -0.189 4.189 7 C -0.168 4.168 8 N -0.687 5.687 9 C 0.132 3.868 10 C -0.198 4.198 11 C -0.085 4.085 12 C -0.243 4.243 13 C 0.079 3.921 14 C -0.504 4.504 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.827 5.827 18 Si 0.982 3.018 19 H -0.259 1.259 20 H -0.264 1.264 21 H -0.265 1.265 22 C -0.191 4.191 23 C -0.086 4.086 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.341 0.659 35 H 0.064 0.936 36 H 0.029 0.971 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.287 0.713 40 H 0.098 0.902 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.421 2.494 15.759 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 H 0.059 0.941 4 C -0.120 4.120 5 C -0.182 4.182 6 C -0.226 4.226 7 C -0.205 4.205 8 N -0.320 5.320 9 C 0.004 3.996 10 C -0.200 4.200 11 C -0.104 4.104 12 C -0.263 4.263 13 C 0.077 3.923 14 C -0.533 4.533 15 H 0.092 0.908 16 C -0.180 4.180 17 N -0.453 5.453 18 Si 0.802 3.198 19 H -0.182 1.182 20 H -0.189 1.189 21 H -0.190 1.190 22 C -0.210 4.210 23 C -0.105 4.105 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.160 0.840 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.130 0.870 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.242 2.317 15.453 15.675 hybrid contribution 0.930 0.026 -0.844 1.257 sum -0.312 2.343 14.608 14.798 Atomic orbital electron populations 1.21777 0.94396 1.01895 1.01455 1.21599 0.95985 0.95714 0.89343 0.94141 1.21322 0.92343 1.01159 0.97207 1.22340 0.94692 0.97644 1.03480 1.23072 1.02020 0.96029 1.01521 1.23011 1.02875 1.03528 0.91040 1.60621 1.33955 1.33388 1.04075 1.20468 0.99055 0.91982 0.88108 1.19344 0.92816 1.08318 0.99497 1.20661 0.94790 0.98486 0.96422 1.21142 0.98005 1.06600 1.00536 1.17957 0.92383 0.89707 0.92238 1.19858 1.00158 1.33317 0.99980 0.90848 1.26754 0.93712 0.96876 1.00616 1.69889 1.13024 1.33590 1.28778 0.85172 0.79582 0.77981 0.77028 1.18213 1.18878 1.18973 1.21267 0.96057 1.05218 0.98506 1.20716 0.97927 0.97458 0.94407 0.92864 0.90807 0.93792 0.89456 0.91564 0.88761 0.88973 0.89204 0.88184 0.87928 0.83957 0.91734 0.95334 0.86961 0.88703 0.90211 0.88429 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.41 71.98 0.68 -2.34 16 2 C 0.08 1.94 2.61 44.92 0.12 2.06 16 3 H 0.04 0.94 7.80 -2.39 -0.02 0.92 16 4 C -0.08 -1.61 5.09 30.59 0.16 -1.45 16 5 C -0.16 -3.18 4.69 -10.80 -0.05 -3.23 16 6 C -0.19 -3.81 9.95 30.60 0.30 -3.51 16 7 C -0.17 -2.76 10.25 30.60 0.31 -2.44 16 8 N -0.69 -20.76 6.30 -495.59 -3.12 -23.88 16 9 C 0.13 4.49 5.60 85.55 0.48 4.97 16 10 C -0.20 -8.52 5.41 -19.68 -0.11 -8.62 16 11 C -0.09 -3.75 9.67 22.22 0.21 -3.54 16 12 C -0.24 -12.28 9.80 22.73 0.22 -12.06 16 13 C 0.08 4.44 5.58 -21.29 -0.12 4.32 16 14 C -0.50 -28.11 9.05 23.46 0.21 -27.90 16 15 H 0.07 3.97 7.91 -2.91 -0.02 3.94 16 16 C 0.03 1.81 5.14 85.26 0.44 2.25 16 17 N -0.83 -44.52 10.95 21.83 0.24 -44.28 16 18 Si 0.98 39.22 29.60 68.60 2.03 41.25 16 19 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 20 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 C -0.19 -10.45 8.70 22.73 0.20 -10.25 16 23 C -0.09 -4.15 9.67 22.22 0.21 -3.93 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.04 1.05 7.45 -2.39 -0.02 1.03 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.40 7.88 -2.39 -0.02 1.38 16 29 H 0.09 1.95 8.08 -2.38 -0.02 1.93 16 30 H 0.09 1.92 8.03 -2.39 -0.02 1.91 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.34 10.48 7.18 -89.69 -0.64 9.84 16 35 H 0.06 2.17 7.37 -2.38 -0.02 2.15 16 36 H 0.03 0.91 7.99 -2.39 -0.02 0.89 16 37 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 38 H 0.09 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 40 H 0.10 5.61 6.16 -2.91 -0.02 5.59 16 41 H 0.10 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -59.15 335.94 2.77 -56.38 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: 0.35 Total: 36.21 kcal Atomic # 6 Polarization: -68.95 SS G_CDS: 3.27 Total: -65.67 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -2.88 Total: -68.16 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -59.15 2.77 -56.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398974881.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.405 kcal (2) G-P(sol) polarization free energy of solvation -59.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds