Wall clock time and date at job start Mon Mar 30 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.01528 * 2 1 4 4 C 1.54264 * 110.02950 * 238.61408 * 2 1 3 5 5 C 1.54888 * 104.19271 * 217.05524 * 4 2 1 6 6 C 1.54890 * 102.75231 * 37.94061 * 5 4 2 7 7 H 1.09004 * 110.48434 * 80.86594 * 6 5 4 8 8 N 1.46901 * 110.48877 * 203.37964 * 6 5 4 9 9 C 1.46897 * 110.99897 * 271.75360 * 8 6 5 10 10 C 1.50704 * 109.46859 * 180.02562 * 9 8 6 11 11 C 1.38635 * 119.74722 * 90.00141 * 10 9 8 12 12 C 1.37614 * 120.24707 * 180.02562 * 11 10 9 13 13 C 1.40717 * 119.74737 * 359.97438 * 12 11 10 14 14 C 1.41390 * 120.24858 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00139 * 26.43968 * 14 13 12 16 16 C 1.39944 * 120.00005 * 206.45031 * 14 13 12 17 17 N 1.30832 * 119.99762 * 203.54774 * 16 14 13 18 18 Si 1.86800 * 120.00303 * 23.54872 * 16 14 13 19 19 H 1.48510 * 109.46871 * 263.27449 * 18 16 14 20 20 H 1.48497 * 109.47161 * 23.27137 * 18 16 14 21 21 H 1.48496 * 109.47540 * 143.27579 * 18 16 14 22 22 C 1.40723 * 119.51030 * 0.27085 * 13 12 11 23 23 C 1.37625 * 119.74128 * 359.45422 * 22 13 12 24 24 C 1.54084 * 109.97052 * 121.45263 * 2 1 3 25 25 H 1.08998 * 109.47572 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47135 * 299.93465 * 1 2 3 27 27 H 1.09000 * 109.47594 * 59.93458 * 1 2 3 28 28 H 1.08997 * 110.49396 * 98.38014 * 4 2 1 29 29 H 1.09007 * 110.48624 * 335.72822 * 4 2 1 30 30 H 1.08995 * 110.75975 * 279.62609 * 5 4 2 31 31 H 1.08999 * 110.91862 * 156.32916 * 5 4 2 32 32 H 1.00899 * 110.99330 * 147.79940 * 8 6 5 33 33 H 1.08998 * 109.47030 * 60.00227 * 9 8 6 34 34 H 1.08998 * 109.47058 * 300.00073 * 9 8 6 35 35 H 1.07996 * 119.87360 * 0.02562 * 11 10 9 36 36 H 1.08002 * 120.12829 * 180.02562 * 12 11 10 37 37 H 0.96992 * 120.00357 * 353.15723 * 17 16 14 38 38 H 1.07995 * 120.12531 * 179.72073 * 22 13 12 39 39 H 1.07996 * 119.87154 * 180.26996 * 23 22 13 40 40 H 1.09003 * 110.15950 * 0.14357 * 24 2 1 41 41 H 1.08998 * 110.00447 * 238.64861 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0583 -0.7548 -1.2373 5 6 3.3143 -1.4993 -0.7202 6 6 2.8891 -1.9398 0.7025 7 1 2.2813 -2.8435 0.6564 8 7 4.0706 -2.1589 1.5476 9 6 4.5578 -3.5392 1.4236 10 6 5.7672 -3.7259 2.3032 11 6 5.6057 -4.1447 3.6149 12 6 6.7028 -4.3180 4.4273 13 6 7.9922 -4.0688 3.9218 14 6 9.1269 -4.2440 4.7470 15 1 9.0922 -4.9398 5.5723 16 6 10.2948 -3.5155 4.4946 17 7 11.4499 -3.9660 4.9124 18 14 10.2047 -1.9000 3.5611 19 1 10.5106 -2.1389 2.1276 20 1 8.8390 -1.3308 3.6876 21 1 11.1929 -0.9462 4.1257 22 6 8.1437 -3.6391 2.5904 23 6 7.0327 -3.4780 1.7944 24 6 2.0562 -0.7557 1.2354 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5128 0.8906 27 1 -0.3634 0.5148 -0.8894 28 1 2.3288 -0.0527 -2.0259 29 1 1.3144 -1.4659 -1.5968 30 1 4.1712 -0.8271 -0.6765 31 1 3.5366 -2.3661 -1.3426 32 1 3.8739 -1.9299 2.5103 33 1 4.8283 -3.7372 0.3865 34 1 3.7738 -4.2304 1.7330 35 1 4.6152 -4.3357 4.0005 36 1 6.5749 -4.6447 5.4487 37 1 11.4874 -4.7509 5.4811 38 1 9.1283 -3.4407 2.1936 39 1 7.1468 -3.1525 0.7710 40 1 1.2228 -1.1244 1.8334 41 1 2.6844 -0.0974 1.8355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398979283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:59 Heat of formation + Delta-G solvation = -13.582221 kcal Electronic energy + Delta-G solvation = -18695.308183 eV Core-core repulsion = 15958.927637 eV Total energy + Delta-G solvation = -2736.380546 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.88230 -37.82409 -34.97158 -33.51682 -31.09783 -29.93571 -29.64677 -28.16777 -25.77901 -24.36711 -22.66146 -21.43532 -20.29684 -20.00923 -19.57796 -18.09752 -15.99553 -15.72623 -14.99165 -14.80803 -14.29946 -13.97575 -13.85423 -13.65829 -13.42052 -13.29880 -12.66104 -12.44182 -12.27144 -12.04707 -11.60879 -11.38803 -11.21035 -11.04314 -10.83885 -10.80819 -10.77392 -10.63186 -10.54938 -10.18753 -10.08412 -9.80182 -9.31989 -8.95126 -8.09933 -7.69357 -7.63837 -7.20198 -4.50371 2.64428 2.75352 3.24311 3.39681 3.60103 4.05144 4.34374 4.48985 4.57727 4.64114 4.88304 5.21611 5.25661 5.39866 5.44623 5.47061 5.51857 5.57397 5.72422 5.75148 5.77226 5.83819 5.91365 5.98848 5.99831 6.10431 6.17490 6.21528 6.26163 6.29371 6.38822 6.62111 6.88719 7.07167 7.36722 7.40527 7.52324 7.62883 7.72731 7.82952 7.91943 8.04221 8.44523 8.61065 8.80912 10.00846 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034994 B = 0.003979 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.944198 B = 7034.642725 C = 7353.843567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.071 0.929 4 C -0.120 4.120 5 C -0.112 4.112 6 C 0.079 3.921 7 H 0.042 0.958 8 N -0.678 5.678 9 C 0.125 3.875 10 C -0.220 4.220 11 C -0.073 4.073 12 C -0.220 4.220 13 C 0.100 3.900 14 C -0.520 4.520 15 H 0.074 0.926 16 C 0.045 3.955 17 N -0.814 5.814 18 Si 1.073 2.927 19 H -0.277 1.277 20 H -0.260 1.260 21 H -0.291 1.291 22 C -0.245 4.245 23 C -0.050 4.050 24 C -0.123 4.123 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.340 0.660 33 H 0.063 0.937 34 H 0.018 0.982 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.286 0.714 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.379 6.140 -8.726 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.158 4.158 5 C -0.151 4.151 6 C -0.031 4.031 7 H 0.060 0.940 8 N -0.310 5.310 9 C -0.003 4.003 10 C -0.222 4.222 11 C -0.092 4.092 12 C -0.239 4.239 13 C 0.097 3.903 14 C -0.548 4.548 15 H 0.092 0.908 16 C -0.175 4.175 17 N -0.437 5.437 18 Si 0.899 3.101 19 H -0.204 1.204 20 H -0.185 1.185 21 H -0.218 1.218 22 C -0.264 4.264 23 C -0.068 4.068 24 C -0.161 4.161 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.158 0.842 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.079 0.921 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.940 7.507 -9.765 19.363 hybrid contribution -1.499 -1.950 1.343 2.803 sum -16.440 5.556 -8.422 19.289 Atomic orbital electron populations 1.21895 0.95361 1.01585 1.01341 1.21704 0.95211 0.99466 0.94898 0.91077 1.22428 0.97552 0.98858 0.97003 1.22506 0.97634 0.99838 0.95092 1.22390 0.90305 0.96283 0.94105 0.93988 1.60731 1.31930 1.25341 1.12983 1.20572 0.94047 0.87047 0.98593 1.18916 0.93172 1.14833 0.95260 1.20463 0.96646 0.98632 0.93410 1.20951 0.92452 1.12126 0.98408 1.17731 0.92591 0.88482 0.91463 1.20628 0.97479 1.22551 1.14142 0.90768 1.27307 0.90891 1.03101 0.96217 1.70536 1.26513 1.22825 1.23791 0.83580 0.77242 0.73530 0.75723 1.20385 1.18466 1.21824 1.21017 0.97059 1.13436 0.94932 1.20420 0.92218 0.96647 0.97551 1.22444 0.98977 0.97217 0.97488 0.92767 0.92880 0.92905 0.91854 0.91897 0.90461 0.92204 0.84164 0.91895 0.96338 0.89479 0.88798 0.90264 0.88142 0.88830 0.92076 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.84 37.16 0.33 -0.82 16 2 C -0.09 -0.88 3.51 -89.39 -0.31 -1.19 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.12 -1.15 6.36 -25.07 -0.16 -1.31 16 5 C -0.11 -1.31 6.55 -24.74 -0.16 -1.47 16 6 C 0.08 0.98 3.17 -66.05 -0.21 0.77 16 7 H 0.04 0.53 7.85 -51.93 -0.41 0.12 16 8 N -0.68 -10.29 6.30 -106.24 -0.67 -10.96 16 9 C 0.13 2.09 5.66 -4.98 -0.03 2.06 16 10 C -0.22 -4.51 5.41 -104.33 -0.56 -5.08 16 11 C -0.07 -1.54 9.67 -39.66 -0.38 -1.92 16 12 C -0.22 -5.25 9.80 -38.87 -0.38 -5.63 16 13 C 0.10 2.61 5.15 -106.82 -0.55 2.06 16 14 C -0.52 -14.27 9.40 -37.74 -0.35 -14.62 16 15 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 16 C 0.04 1.20 5.34 -17.34 -0.09 1.10 16 17 N -0.81 -22.21 13.65 55.55 0.76 -21.45 16 18 Si 1.07 24.93 24.98 -169.99 -4.25 20.68 16 19 H -0.28 -6.16 6.68 56.52 0.38 -5.79 16 20 H -0.26 -6.08 6.99 56.52 0.40 -5.68 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.25 -6.05 7.35 -38.87 -0.29 -6.34 16 23 C -0.05 -1.10 9.67 -39.66 -0.38 -1.48 16 24 C -0.12 -1.32 5.94 -25.50 -0.15 -1.47 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.56 7.85 -51.93 -0.41 0.16 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.34 5.15 8.36 -39.29 -0.33 4.82 16 33 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.02 0.29 8.01 -51.93 -0.42 -0.12 16 35 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 37 H 0.29 7.57 8.73 -40.82 -0.36 7.21 16 38 H 0.10 2.47 4.67 -52.49 -0.25 2.23 16 39 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.06 0.61 7.68 -51.93 -0.40 0.21 16 41 H 0.07 0.84 7.96 -51.93 -0.41 0.42 16 LS Contribution 325.97 15.07 4.91 4.91 Total: -1.00 -27.07 325.97 -9.81 -36.87 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.87 Total: 5.28 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: -3.69 Total: -35.34 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.09 Total: -32.40 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -4.25 Total: 20.68 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.07 -9.81 -36.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398979283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.290 kcal (2) G-P(sol) polarization free energy of solvation -27.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds