Wall clock time and date at job start Mon Mar 30 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.01528 * 2 1 4 4 C 1.54264 * 110.02950 * 238.61408 * 2 1 3 5 5 C 1.54888 * 104.19271 * 217.05524 * 4 2 1 6 6 C 1.54890 * 102.75231 * 37.94061 * 5 4 2 7 7 H 1.09004 * 110.48434 * 80.86594 * 6 5 4 8 8 N 1.46901 * 110.48877 * 203.37964 * 6 5 4 9 9 C 1.46897 * 110.99897 * 271.75360 * 8 6 5 10 10 C 1.50704 * 109.46859 * 180.02562 * 9 8 6 11 11 C 1.38635 * 119.74722 * 90.00141 * 10 9 8 12 12 C 1.37614 * 120.24707 * 180.02562 * 11 10 9 13 13 C 1.40717 * 119.74737 * 359.97438 * 12 11 10 14 14 C 1.41390 * 120.24858 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00139 * 26.43968 * 14 13 12 16 16 C 1.39944 * 120.00005 * 206.45031 * 14 13 12 17 17 N 1.30832 * 119.99762 * 203.54774 * 16 14 13 18 18 Si 1.86800 * 120.00303 * 23.54872 * 16 14 13 19 19 H 1.48510 * 109.46871 * 263.27449 * 18 16 14 20 20 H 1.48497 * 109.47161 * 23.27137 * 18 16 14 21 21 H 1.48496 * 109.47540 * 143.27579 * 18 16 14 22 22 C 1.40723 * 119.51030 * 0.27085 * 13 12 11 23 23 C 1.37625 * 119.74128 * 359.45422 * 22 13 12 24 24 C 1.54084 * 109.97052 * 121.45263 * 2 1 3 25 25 H 1.08998 * 109.47572 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47135 * 299.93465 * 1 2 3 27 27 H 1.09000 * 109.47594 * 59.93458 * 1 2 3 28 28 H 1.08997 * 110.49396 * 98.38014 * 4 2 1 29 29 H 1.09007 * 110.48624 * 335.72822 * 4 2 1 30 30 H 1.08995 * 110.75975 * 279.62609 * 5 4 2 31 31 H 1.08999 * 110.91862 * 156.32916 * 5 4 2 32 32 H 1.00899 * 110.99330 * 147.79940 * 8 6 5 33 33 H 1.08998 * 109.47030 * 60.00227 * 9 8 6 34 34 H 1.08998 * 109.47058 * 300.00073 * 9 8 6 35 35 H 1.07996 * 119.87360 * 0.02562 * 11 10 9 36 36 H 1.08002 * 120.12829 * 180.02562 * 12 11 10 37 37 H 0.96992 * 120.00357 * 353.15723 * 17 16 14 38 38 H 1.07995 * 120.12531 * 179.72073 * 22 13 12 39 39 H 1.07996 * 119.87154 * 180.26996 * 23 22 13 40 40 H 1.09003 * 110.15950 * 0.14357 * 24 2 1 41 41 H 1.08998 * 110.00447 * 238.64861 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0583 -0.7548 -1.2373 5 6 3.3143 -1.4993 -0.7202 6 6 2.8891 -1.9398 0.7025 7 1 2.2813 -2.8435 0.6564 8 7 4.0706 -2.1589 1.5476 9 6 4.5578 -3.5392 1.4236 10 6 5.7672 -3.7259 2.3032 11 6 5.6057 -4.1447 3.6149 12 6 6.7028 -4.3180 4.4273 13 6 7.9922 -4.0688 3.9218 14 6 9.1269 -4.2440 4.7470 15 1 9.0922 -4.9398 5.5723 16 6 10.2948 -3.5155 4.4946 17 7 11.4499 -3.9660 4.9124 18 14 10.2047 -1.9000 3.5611 19 1 10.5106 -2.1389 2.1276 20 1 8.8390 -1.3308 3.6876 21 1 11.1929 -0.9462 4.1257 22 6 8.1437 -3.6391 2.5904 23 6 7.0327 -3.4780 1.7944 24 6 2.0562 -0.7557 1.2354 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5128 0.8906 27 1 -0.3634 0.5148 -0.8894 28 1 2.3288 -0.0527 -2.0259 29 1 1.3144 -1.4659 -1.5968 30 1 4.1712 -0.8271 -0.6765 31 1 3.5366 -2.3661 -1.3426 32 1 3.8739 -1.9299 2.5103 33 1 4.8283 -3.7372 0.3865 34 1 3.7738 -4.2304 1.7330 35 1 4.6152 -4.3357 4.0005 36 1 6.5749 -4.6447 5.4487 37 1 11.4874 -4.7509 5.4811 38 1 9.1283 -3.4407 2.1936 39 1 7.1468 -3.1525 0.7710 40 1 1.2228 -1.1244 1.8334 41 1 2.6844 -0.0974 1.8355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398979283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:58 Heat of formation + Delta-G solvation = -27.960470 kcal Electronic energy + Delta-G solvation = -18695.931670 eV Core-core repulsion = 15958.927637 eV Total energy + Delta-G solvation = -2737.004033 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.02480 -39.36538 -36.39389 -35.22167 -32.55230 -31.47998 -30.97513 -29.30776 -27.21413 -25.28675 -24.26463 -23.24578 -21.74559 -21.17126 -20.47763 -20.05932 -17.22464 -16.91455 -16.43650 -16.17770 -15.88517 -15.53965 -15.34931 -14.93988 -14.44178 -14.28202 -14.08823 -14.04756 -13.73830 -13.17181 -13.09598 -12.87720 -12.63162 -12.47985 -12.00336 -11.92214 -11.87507 -11.67652 -11.61753 -11.52845 -11.41988 -11.25865 -11.21210 -10.87805 -9.63333 -9.49939 -9.28430 -9.13862 -6.55617 0.80243 0.89724 1.36751 1.54916 1.76759 2.17076 2.57447 3.32192 3.62331 3.67468 3.80231 4.05606 4.20688 4.25052 4.42374 4.42827 4.53455 4.58703 4.62768 4.64137 4.74068 4.78322 4.81195 4.87535 5.00190 5.05201 5.09561 5.13672 5.18897 5.21004 5.33889 5.39526 5.40732 5.42803 5.55372 5.60672 5.75603 5.86409 6.07706 6.15296 6.29375 6.45629 6.56938 6.68829 6.84105 7.96596 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034994 B = 0.003979 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.944198 B = 7034.642725 C = 7353.843567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.070 0.930 4 C -0.115 4.115 5 C -0.114 4.114 6 C 0.079 3.921 7 H 0.047 0.953 8 N -0.688 5.688 9 C 0.131 3.869 10 C -0.195 4.195 11 C -0.071 4.071 12 C -0.233 4.233 13 C 0.075 3.925 14 C -0.557 4.557 15 H 0.045 0.955 16 C 0.013 3.987 17 N -0.842 5.842 18 Si 1.106 2.894 19 H -0.261 1.261 20 H -0.264 1.264 21 H -0.278 1.278 22 C -0.255 4.255 23 C -0.059 4.059 24 C -0.120 4.120 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.340 0.660 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.278 0.722 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.069 0.931 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.453 7.316 -10.935 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.089 0.911 4 C -0.153 4.153 5 C -0.152 4.152 6 C -0.031 4.031 7 H 0.065 0.935 8 N -0.319 5.319 9 C 0.002 3.998 10 C -0.196 4.196 11 C -0.089 4.089 12 C -0.253 4.253 13 C 0.073 3.927 14 C -0.587 4.587 15 H 0.063 0.937 16 C -0.200 4.200 17 N -0.466 5.466 18 Si 0.927 3.073 19 H -0.186 1.186 20 H -0.189 1.189 21 H -0.205 1.205 22 C -0.274 4.274 23 C -0.077 4.077 24 C -0.158 4.158 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.158 0.842 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.140 0.860 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.137 0.863 40 H 0.088 0.912 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.024 8.672 -11.977 23.313 hybrid contribution -0.830 -2.352 1.943 3.162 sum -18.854 6.320 -10.034 22.273 Atomic orbital electron populations 1.21867 0.94142 1.01888 1.01996 1.21704 0.96217 0.99175 0.94104 0.91143 1.22408 0.96673 0.98992 0.97221 1.22497 0.98101 0.99773 0.94841 1.22465 0.89497 0.97133 0.93964 0.93493 1.60655 1.33772 1.24030 1.13450 1.20512 0.92692 0.88480 0.98068 1.19455 0.94266 1.10659 0.95261 1.20807 0.97345 0.97381 0.93401 1.21153 0.92713 1.12274 0.99113 1.17910 0.92979 0.89724 0.92115 1.20594 0.99282 1.23964 1.14817 0.93705 1.28288 0.90390 1.04801 0.96568 1.70601 1.26896 1.23382 1.25705 0.83172 0.77202 0.71017 0.75911 1.18629 1.18879 1.20467 1.21139 0.98004 1.13604 0.94680 1.20765 0.92069 0.96331 0.98546 1.22423 0.98839 0.96525 0.98053 0.92614 0.92551 0.92022 0.91062 0.90992 0.91992 0.92181 0.84160 0.91052 0.94752 0.86038 0.88831 0.91156 0.88528 0.86319 0.91219 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.84 71.98 0.64 -1.15 16 2 C -0.09 -1.46 3.51 -10.00 -0.04 -1.49 16 3 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.12 -1.82 6.36 31.67 0.20 -1.61 16 5 C -0.11 -2.32 6.55 31.89 0.21 -2.11 16 6 C 0.08 1.69 3.17 45.99 0.15 1.83 16 7 H 0.05 0.99 7.85 -2.38 -0.02 0.97 16 8 N -0.69 -18.46 6.30 -490.02 -3.09 -21.55 16 9 C 0.13 3.82 5.66 85.56 0.48 4.30 16 10 C -0.20 -7.35 5.41 -19.67 -0.11 -7.46 16 11 C -0.07 -2.81 9.67 22.22 0.21 -2.59 16 12 C -0.23 -11.06 9.80 22.73 0.22 -10.83 16 13 C 0.08 3.97 5.15 -21.29 -0.11 3.86 16 14 C -0.56 -32.10 9.40 23.46 0.22 -31.88 16 15 H 0.04 2.73 8.06 -2.91 -0.02 2.70 16 16 C 0.01 0.74 5.34 85.26 0.46 1.20 16 17 N -0.84 -47.93 13.65 21.83 0.30 -47.63 16 18 Si 1.11 50.80 24.98 68.60 1.71 52.51 16 19 H -0.26 -11.16 6.68 99.48 0.66 -10.49 16 20 H -0.26 -12.13 6.99 99.48 0.70 -11.43 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 22 C -0.26 -12.42 7.35 22.73 0.17 -12.25 16 23 C -0.06 -2.44 9.67 22.22 0.21 -2.23 16 24 C -0.12 -2.21 5.94 31.39 0.19 -2.02 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.02 7.85 -2.38 -0.02 1.01 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.34 9.15 8.36 -89.70 -0.75 8.40 16 33 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 34 H 0.03 0.93 8.01 -2.39 -0.02 0.91 16 35 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 36 H 0.09 4.34 8.06 -2.91 -0.02 4.31 16 37 H 0.28 15.65 8.73 -92.71 -0.81 14.84 16 38 H 0.10 4.72 4.67 -2.91 -0.01 4.71 16 39 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 40 H 0.07 1.16 7.68 -2.39 -0.02 1.14 16 41 H 0.06 1.30 7.96 -2.39 -0.02 1.29 16 Total: -1.00 -59.29 325.97 2.18 -57.10 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.15 Total: 24.00 kcal Atomic # 6 Polarization: -67.55 SS G_CDS: 3.11 Total: -64.44 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: -2.79 Total: -69.18 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 1.71 Total: 52.51 kcal Total: -59.29 2.18 -57.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398979283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.144 kcal (2) G-P(sol) polarization free energy of solvation -59.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds