Wall clock time and date at job start Mon Mar 30 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09008 * 110.43792 * 2 1 4 4 C 1.54275 * 110.48674 * 122.53940 * 2 1 3 5 5 C 1.53872 * 106.63898 * 142.39868 * 4 2 1 6 6 C 1.54377 * 106.54798 * 0.03645 * 5 4 2 7 7 H 1.09006 * 110.61552 * 95.10110 * 6 5 4 8 8 N 1.46894 * 110.46483 * 217.68422 * 6 5 4 9 9 C 1.46896 * 111.00381 * 269.76796 * 8 6 5 10 10 C 1.50702 * 109.47592 * 180.02562 * 9 8 6 11 11 C 1.38634 * 119.75072 * 269.72501 * 10 9 8 12 12 C 1.37613 * 120.25069 * 179.76032 * 11 10 9 13 13 C 1.40720 * 119.74395 * 0.53032 * 12 11 10 14 14 C 1.41389 * 120.24201 * 179.74686 * 13 12 11 15 15 H 1.08000 * 120.00471 * 24.35782 * 14 13 12 16 16 C 1.39951 * 119.99633 * 204.35608 * 14 13 12 17 17 N 1.30821 * 119.99964 * 17.86913 * 16 14 13 18 18 Si 1.86795 * 120.00013 * 197.86491 * 16 14 13 19 19 H 1.48500 * 109.47551 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47253 * 120.00472 * 18 16 14 21 21 H 1.48507 * 109.47493 * 240.00222 * 18 16 14 22 22 C 1.40717 * 119.50668 * 359.72089 * 13 12 11 23 23 C 1.37615 * 119.74974 * 0.02562 * 22 13 12 24 24 C 1.54890 * 104.19532 * 336.35380 * 6 5 4 25 25 H 1.09000 * 109.47474 * 298.91457 * 1 2 3 26 26 H 1.09003 * 109.47267 * 58.91610 * 1 2 3 27 27 H 1.09000 * 109.47104 * 178.91382 * 1 2 3 28 28 H 1.08995 * 110.02848 * 261.70849 * 4 2 1 29 29 H 1.08993 * 110.02795 * 23.08812 * 4 2 1 30 30 H 1.08996 * 110.03402 * 119.30813 * 5 4 2 31 31 H 1.09005 * 110.02899 * 240.74029 * 5 4 2 32 32 H 1.00899 * 110.99860 * 145.80554 * 8 6 5 33 33 H 1.09003 * 109.47049 * 299.99936 * 9 8 6 34 34 H 1.08999 * 109.47604 * 59.99388 * 9 8 6 35 35 H 1.08003 * 119.87228 * 359.97438 * 11 10 9 36 36 H 1.07999 * 120.12877 * 180.27906 * 12 11 10 37 37 H 0.97003 * 120.00540 * 179.97438 * 17 16 14 38 38 H 1.08008 * 120.12268 * 180.02562 * 22 13 12 39 39 H 1.08000 * 119.87581 * 179.97438 * 23 22 13 40 40 H 1.08993 * 110.75610 * 279.64960 * 24 6 5 41 41 H 1.09004 * 110.90774 * 156.35347 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0698 -0.7773 1.2183 5 6 3.3182 -1.5378 0.7378 6 6 3.4937 -1.1947 -0.7571 7 1 4.1920 -0.3670 -0.8815 8 7 3.9562 -2.3724 -1.5035 9 6 5.4236 -2.4298 -1.5399 10 6 5.8597 -3.6479 -2.3126 11 6 6.0643 -4.8473 -1.6481 12 6 6.4579 -5.9672 -2.3443 13 6 6.6634 -5.8888 -3.7342 14 6 7.0730 -7.0316 -4.4591 15 1 6.8601 -8.0188 -4.0764 16 6 7.7543 -6.8834 -5.6725 17 7 8.3182 -5.7413 -5.9708 18 14 7.8586 -8.3164 -6.8662 19 1 7.1438 -9.4874 -6.2976 20 1 7.2312 -7.9327 -8.1563 21 1 9.2832 -8.6684 -7.0939 22 6 6.4578 -4.6648 -4.3973 23 6 6.0592 -3.5590 -3.6816 24 6 2.0749 -0.7816 -1.2211 25 1 -0.3634 0.4969 0.8995 26 1 -0.3634 0.5306 -0.8801 27 1 -0.3633 -1.0275 -0.0195 28 1 2.3388 -0.0834 2.0146 29 1 1.3181 -1.4813 1.5750 30 1 4.1931 -1.2129 1.3009 31 1 3.1719 -2.6110 0.8606 32 1 3.5706 -2.3839 -2.4358 33 1 5.8103 -1.5340 -2.0259 34 1 5.8104 -2.4868 -0.5224 35 1 5.9109 -4.9038 -0.5805 36 1 6.6123 -6.9016 -1.8254 37 1 8.7908 -5.6386 -6.8117 38 1 6.6122 -4.5935 -5.4639 39 1 5.9011 -2.6185 -4.1884 40 1 1.4628 -1.6608 -1.4216 41 1 2.1248 -0.1389 -2.1002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398979287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:01 Heat of formation + Delta-G solvation = -23.174695 kcal Electronic energy + Delta-G solvation = -18529.510436 eV Core-core repulsion = 15792.713929 eV Total energy + Delta-G solvation = -2736.796507 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.90891 -39.22144 -36.34552 -35.07710 -32.28625 -31.15964 -30.91126 -29.29301 -27.46073 -25.37790 -24.47843 -22.87051 -21.71028 -21.12490 -20.34803 -19.21225 -17.30556 -17.08666 -16.60071 -15.91953 -15.73215 -15.58399 -15.10786 -14.64405 -14.33835 -14.29037 -13.97629 -13.79786 -13.52808 -13.21771 -13.01834 -12.87006 -12.66887 -12.46356 -12.32829 -11.98658 -11.92216 -11.74670 -11.64805 -11.43340 -11.32758 -11.25194 -11.13395 -10.99121 -9.40425 -9.26729 -9.13790 -8.63604 -6.32479 0.94701 1.16795 1.37867 1.49698 1.53467 2.21126 2.69777 3.37768 3.66238 3.76082 3.81862 4.08669 4.29326 4.32115 4.41459 4.53362 4.54872 4.63217 4.64939 4.70255 4.75413 4.76629 4.85596 4.99623 5.05181 5.10957 5.14510 5.17334 5.22266 5.27971 5.37431 5.38912 5.43866 5.49114 5.60209 5.72373 5.97639 6.11585 6.23387 6.31136 6.41015 6.57041 6.71637 6.95435 7.05416 8.33686 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.045484 B = 0.003368 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.456326 B = 8311.466695 C = 8454.178904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 H 0.078 0.922 4 C -0.114 4.114 5 C -0.115 4.115 6 C 0.077 3.923 7 H 0.045 0.955 8 N -0.684 5.684 9 C 0.133 3.867 10 C -0.200 4.200 11 C -0.073 4.073 12 C -0.245 4.245 13 C 0.079 3.921 14 C -0.502 4.502 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.826 5.826 18 Si 0.982 3.018 19 H -0.259 1.259 20 H -0.263 1.263 21 H -0.265 1.265 22 C -0.189 4.189 23 C -0.098 4.098 24 C -0.119 4.119 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.339 0.661 33 H 0.026 0.974 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.288 0.712 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.561 10.537 7.885 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.097 0.903 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.033 4.033 7 H 0.063 0.937 8 N -0.315 5.315 9 C 0.005 3.995 10 C -0.202 4.202 11 C -0.092 4.092 12 C -0.264 4.264 13 C 0.077 3.923 14 C -0.532 4.532 15 H 0.091 0.909 16 C -0.180 4.180 17 N -0.452 5.452 18 Si 0.803 3.197 19 H -0.183 1.183 20 H -0.188 1.188 21 H -0.190 1.190 22 C -0.209 4.209 23 C -0.117 4.117 24 C -0.157 4.157 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.087 0.913 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.458 10.244 8.271 16.814 hybrid contribution 0.703 -0.104 -1.314 1.494 sum -9.755 10.140 6.957 15.697 Atomic orbital electron populations 1.21776 0.94104 1.01831 1.02136 1.21890 0.96184 0.98990 0.94012 0.90314 1.22175 0.96598 0.98751 0.97695 1.22177 0.98070 1.00537 0.94550 1.22504 0.95899 0.90267 0.94616 0.93661 1.60650 1.07945 1.41511 1.21411 1.20468 0.87572 0.93201 0.98255 1.19339 1.11698 0.95699 0.93432 1.20626 0.97792 0.92477 0.98261 1.21171 1.12951 0.98286 0.94038 1.17973 0.88972 0.93611 0.91793 1.19850 1.33932 0.94044 1.05349 0.90922 1.26759 0.92038 0.99791 0.99403 1.69884 1.24569 1.27383 1.23408 0.85164 0.78981 0.78051 0.77520 1.18283 1.18808 1.18979 1.21247 1.06469 0.94025 0.99144 1.20766 0.99715 0.97069 0.94123 1.22725 0.94833 0.99978 0.98183 0.91788 0.92346 0.92980 0.91043 0.91639 0.92407 0.92281 0.84314 0.95588 0.91397 0.87161 0.88826 0.90185 0.88258 0.87858 0.91276 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.12 71.98 0.66 -1.36 16 2 C -0.09 -1.53 3.45 -9.72 -0.03 -1.57 16 3 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 4 C -0.11 -2.03 6.37 31.32 0.20 -1.83 16 5 C -0.11 -2.60 6.54 31.36 0.20 -2.40 16 6 C 0.08 1.86 3.20 46.03 0.15 2.00 16 7 H 0.05 1.10 7.82 -2.38 -0.02 1.08 16 8 N -0.68 -20.75 6.30 -489.84 -3.09 -23.83 16 9 C 0.13 4.53 5.66 85.56 0.48 5.01 16 10 C -0.20 -8.58 5.42 -19.67 -0.11 -8.68 16 11 C -0.07 -3.31 9.67 22.22 0.21 -3.09 16 12 C -0.24 -12.53 9.80 22.73 0.22 -12.30 16 13 C 0.08 4.40 5.58 -21.29 -0.12 4.29 16 14 C -0.50 -27.99 9.05 23.46 0.21 -27.78 16 15 H 0.07 3.94 7.91 -2.91 -0.02 3.91 16 16 C 0.03 1.79 5.14 85.26 0.44 2.23 16 17 N -0.83 -44.12 10.95 21.83 0.24 -43.88 16 18 Si 0.98 39.03 29.59 68.60 2.03 41.06 16 19 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 20 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 21 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 22 C -0.19 -10.20 8.70 22.73 0.20 -10.00 16 23 C -0.10 -4.57 9.67 22.22 0.21 -4.35 16 24 C -0.12 -2.42 5.69 31.89 0.18 -2.24 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.14 7.84 -2.39 -0.02 1.13 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.55 8.04 -2.38 -0.02 1.53 16 32 H 0.34 10.42 8.41 -89.69 -0.75 9.66 16 33 H 0.03 0.85 8.01 -2.39 -0.02 0.83 16 34 H 0.07 2.22 8.08 -2.39 -0.02 2.21 16 35 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 36 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 37 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 38 H 0.10 5.59 6.16 -2.91 -0.02 5.58 16 39 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.07 1.53 8.06 -2.39 -0.02 1.51 16 41 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -58.58 331.00 2.54 -56.05 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.24 Total: 32.68 kcal Atomic # 6 Polarization: -65.19 SS G_CDS: 3.12 Total: -62.07 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -2.85 Total: -67.72 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -58.58 2.54 -56.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398979287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.873 kcal (2) G-P(sol) polarization free energy of solvation -58.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds