Wall clock time and date at job start Mon Mar 30 2020 06:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47108 * 2 1 4 4 C 1.52996 * 109.47194 * 119.99947 * 2 1 3 5 5 N 1.46893 * 109.47307 * 294.99850 * 4 2 1 6 6 C 1.46900 * 111.00321 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47174 * 180.02562 * 6 5 4 8 8 C 1.38634 * 119.75201 * 269.72517 * 7 6 5 9 9 C 1.37614 * 120.24991 * 179.72175 * 8 7 6 10 10 C 1.40714 * 119.74607 * 0.57604 * 9 8 7 11 11 C 1.41393 * 120.24463 * 179.68511 * 10 9 8 12 12 H 1.08003 * 119.99998 * 204.40512 * 11 10 9 13 13 C 1.39946 * 120.00412 * 24.39813 * 11 10 9 14 14 N 1.30821 * 119.99615 * 17.85306 * 13 11 10 15 15 Si 1.86800 * 120.00282 * 197.84908 * 13 11 10 16 16 H 1.48500 * 109.46661 * 60.00210 * 15 13 11 17 17 H 1.48503 * 109.47051 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47174 * 300.00483 * 15 13 11 19 19 C 1.40718 * 119.50961 * 359.70150 * 10 9 8 20 20 C 1.37616 * 119.74315 * 0.02562 * 19 10 9 21 21 C 1.53004 * 109.47195 * 240.00088 * 2 1 3 22 22 C 1.52996 * 117.50146 * 128.62217 * 21 2 1 23 23 C 1.52997 * 117.49869 * 59.99713 * 21 2 1 24 24 H 1.08997 * 109.47439 * 299.99809 * 1 2 3 25 25 H 1.09007 * 109.47147 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47342 * 60.00165 * 1 2 3 27 27 H 1.09000 * 109.47041 * 55.00231 * 4 2 1 28 28 H 1.09001 * 109.47215 * 174.99775 * 4 2 1 29 29 H 1.00905 * 111.00082 * 56.04773 * 5 4 2 30 30 H 1.09009 * 109.47273 * 300.00468 * 6 5 4 31 31 H 1.09004 * 109.47159 * 59.99944 * 6 5 4 32 32 H 1.08005 * 119.87157 * 359.97438 * 8 7 6 33 33 H 1.08007 * 120.12632 * 180.27937 * 9 8 7 34 34 H 0.97001 * 119.99845 * 179.97438 * 14 13 11 35 35 H 1.08001 * 120.12459 * 179.97438 * 19 10 9 36 36 H 1.07998 * 119.87081 * 180.02562 * 20 19 10 37 37 H 1.08997 * 115.54830 * 274.33133 * 21 2 1 38 38 H 1.09003 * 117.49724 * 359.97438 * 22 21 2 39 39 H 1.08998 * 117.49993 * 145.02011 * 22 21 2 40 40 H 1.08998 * 117.49927 * 214.98148 * 23 21 2 41 41 H 1.09002 * 117.49875 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6514 0.0374 2.4456 6 6 2.1248 -0.6271 3.6672 7 6 1.7078 0.1781 4.8708 8 6 2.5484 1.1641 5.3638 9 6 2.1754 1.9094 6.4589 10 6 0.9408 1.6592 7.0859 11 6 0.5499 2.4141 8.2157 12 1 -0.1572 2.0034 8.9213 13 6 1.0793 3.6933 8.4200 14 7 1.6448 4.3330 7.4288 15 14 0.9784 4.4875 10.1077 16 1 1.6936 3.6413 11.0964 17 1 1.6065 5.8324 10.0603 18 1 -0.4454 4.6204 10.5079 19 6 0.0981 0.6519 6.5804 20 6 0.4892 -0.0771 5.4807 21 6 2.0400 -0.7212 -1.2493 22 6 3.0741 0.0051 -2.1117 23 6 1.6357 -0.1495 -2.6096 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 1.6054 -1.7198 1.2951 28 1 3.1263 -0.7995 1.2055 29 1 0.6528 0.1793 2.4753 30 1 1.6904 -1.6250 3.7297 31 1 3.2117 -0.7051 3.6405 32 1 3.4979 1.3508 4.8840 33 1 2.8299 2.6801 6.8385 34 1 2.0115 5.2198 7.5702 35 1 -0.8515 0.4513 7.0541 36 1 -0.1561 -0.8504 5.0907 37 1 2.1267 -1.8044 -1.1642 38 1 3.3908 0.9971 -1.7893 39 1 3.8415 -0.6002 -2.5942 40 1 1.4568 -0.8566 -3.4196 41 1 1.0067 0.7407 -2.6146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398998259.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:16 Heat of formation + Delta-G solvation = 21.777695 kcal Electronic energy + Delta-G solvation = -18341.889208 eV Core-core repulsion = 15607.041983 eV Total energy + Delta-G solvation = -2734.847225 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.53044 -37.64063 -35.63511 -33.71742 -31.95707 -29.74291 -29.18358 -26.84131 -25.40641 -23.24781 -22.39558 -21.79989 -20.90864 -20.01119 -19.59303 -17.26186 -16.20494 -15.37390 -15.26336 -14.92285 -14.38260 -13.88900 -13.71406 -13.53969 -13.28939 -12.97779 -12.51985 -12.32029 -11.92950 -11.81673 -11.60097 -11.55579 -11.24001 -11.10743 -11.01584 -10.89253 -10.74068 -10.48682 -10.36944 -10.21549 -9.96798 -9.54582 -9.33015 -9.09263 -7.98052 -7.40380 -7.26777 -6.72774 -4.31936 2.78669 3.07757 3.10366 3.11653 3.21682 3.67921 3.94951 4.36317 4.63253 4.79224 4.81097 4.99104 5.05293 5.28843 5.36172 5.48675 5.55168 5.72242 5.73414 5.77839 5.81877 5.94779 5.95502 5.98492 6.00887 6.10614 6.27824 6.30632 6.39120 6.43178 6.49081 6.99482 7.10242 7.33545 7.39962 7.49145 7.65181 7.79244 7.94439 8.08972 8.19380 8.33811 8.68172 8.92808 9.01735 10.21484 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037643 B = 0.003331 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.647991 B = 8404.135240 C = 8623.990042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.060 4.060 3 H 0.080 0.920 4 C 0.065 3.935 5 N -0.685 5.685 6 C 0.125 3.875 7 C -0.213 4.213 8 C -0.079 4.079 9 C -0.167 4.167 10 C 0.112 3.888 11 C -0.464 4.464 12 H 0.076 0.924 13 C 0.076 3.924 14 N -0.791 5.791 15 Si 0.907 3.093 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.266 1.266 19 C -0.228 4.228 20 C -0.086 4.086 21 C -0.144 4.144 22 C -0.181 4.181 23 C -0.181 4.181 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.022 0.978 28 H 0.067 0.933 29 H 0.339 0.661 30 H 0.017 0.983 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.281 0.719 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 -6.466 -12.940 14.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 H 0.098 0.902 4 C -0.064 4.064 5 N -0.317 5.317 6 C -0.003 4.003 7 C -0.215 4.215 8 C -0.098 4.098 9 C -0.187 4.187 10 C 0.110 3.890 11 C -0.494 4.494 12 H 0.094 0.906 13 C -0.142 4.142 14 N -0.416 5.416 15 Si 0.732 3.268 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.247 4.247 20 C -0.105 4.105 21 C -0.163 4.163 22 C -0.218 4.218 23 C -0.218 4.218 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.040 0.960 28 H 0.086 0.914 29 H 0.158 0.842 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.578 -5.812 -13.037 14.361 hybrid contribution -0.670 -0.293 0.694 1.008 sum 0.908 -6.105 -12.343 13.800 Atomic orbital electron populations 1.21829 0.95185 1.01508 1.01921 1.20740 0.95528 0.99738 0.91911 0.90210 1.21936 1.00290 0.94226 0.89956 1.60654 1.19913 1.50007 1.01132 1.20547 0.98791 0.93321 0.87626 1.18915 0.98168 1.04135 1.00263 1.20501 0.97565 0.95307 0.96427 1.21312 0.97384 1.01660 0.98327 1.17615 0.90208 0.89994 0.91217 1.19559 1.23260 0.99215 1.07364 0.90581 1.25907 0.93064 0.97237 0.97970 1.69829 1.28293 1.12088 1.31435 0.86390 0.79541 0.78241 0.82661 1.18854 1.20351 1.19056 1.20924 0.99814 1.03713 1.00289 1.20349 0.95153 0.98422 0.96535 1.22310 1.03458 0.99002 0.91541 1.23016 0.92334 1.02225 1.04204 1.22918 0.98254 1.03328 0.97311 0.92018 0.93072 0.92731 0.96034 0.91416 0.84154 0.96529 0.92074 0.89494 0.86529 0.90844 0.89203 0.89992 0.88146 0.88672 0.89152 0.89175 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.80 37.16 0.33 -1.30 16 2 C -0.06 -0.70 2.75 -90.62 -0.25 -0.95 16 3 H 0.08 1.04 7.90 -51.93 -0.41 0.63 16 4 C 0.07 0.87 5.13 -3.83 -0.02 0.85 16 5 N -0.69 -11.29 6.49 -115.06 -0.75 -12.03 16 6 C 0.12 2.25 5.80 -4.98 -0.03 2.22 16 7 C -0.21 -4.68 5.41 -104.33 -0.56 -5.25 16 8 C -0.08 -1.89 9.67 -39.66 -0.38 -2.27 16 9 C -0.17 -4.42 8.70 -38.87 -0.34 -4.76 16 10 C 0.11 3.03 5.58 -106.83 -0.60 2.44 16 11 C -0.46 -12.48 9.05 -37.74 -0.34 -12.82 16 12 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 13 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 14 N -0.79 -20.74 10.95 55.55 0.61 -20.13 16 15 Si 0.91 18.82 29.60 -169.99 -5.03 13.79 16 16 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 19 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 20 C -0.09 -1.93 9.67 -39.66 -0.38 -2.31 16 21 C -0.14 -1.44 5.15 -90.62 -0.47 -1.91 16 22 C -0.18 -1.68 10.18 -26.73 -0.27 -1.95 16 23 C -0.18 -1.61 9.73 -26.73 -0.26 -1.87 16 24 H 0.06 0.75 6.68 -51.93 -0.35 0.40 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.55 7.29 -51.93 -0.38 0.17 16 27 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.34 5.61 6.97 -39.29 -0.27 5.34 16 30 H 0.02 0.28 8.08 -51.92 -0.42 -0.14 16 31 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 32 H 0.09 1.93 8.06 -52.48 -0.42 1.50 16 33 H 0.12 3.18 6.16 -52.48 -0.32 2.86 16 34 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 35 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.08 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.10 0.97 8.11 -51.93 -0.42 0.54 16 38 H 0.09 0.91 8.05 -51.93 -0.42 0.50 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.83 7.61 -51.93 -0.40 0.44 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -27.04 334.92 -10.91 -37.95 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.74 Total: 9.47 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: -4.05 Total: -34.09 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: -0.14 Total: -32.16 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.04 -10.91 -37.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398998259.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.724 kcal (2) G-P(sol) polarization free energy of solvation -27.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds