Wall clock time and date at job start Mon Mar 30 2020 06:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47108 * 2 1 4 4 C 1.52996 * 109.47194 * 119.99947 * 2 1 3 5 5 N 1.46893 * 109.47307 * 294.99850 * 4 2 1 6 6 C 1.46900 * 111.00321 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47174 * 180.02562 * 6 5 4 8 8 C 1.38634 * 119.75201 * 269.72517 * 7 6 5 9 9 C 1.37614 * 120.24991 * 179.72175 * 8 7 6 10 10 C 1.40714 * 119.74607 * 0.57604 * 9 8 7 11 11 C 1.41393 * 120.24463 * 179.68511 * 10 9 8 12 12 H 1.08003 * 119.99998 * 204.40512 * 11 10 9 13 13 C 1.39946 * 120.00412 * 24.39813 * 11 10 9 14 14 N 1.30821 * 119.99615 * 17.85306 * 13 11 10 15 15 Si 1.86800 * 120.00282 * 197.84908 * 13 11 10 16 16 H 1.48500 * 109.46661 * 60.00210 * 15 13 11 17 17 H 1.48503 * 109.47051 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47174 * 300.00483 * 15 13 11 19 19 C 1.40718 * 119.50961 * 359.70150 * 10 9 8 20 20 C 1.37616 * 119.74315 * 0.02562 * 19 10 9 21 21 C 1.53004 * 109.47195 * 240.00088 * 2 1 3 22 22 C 1.52996 * 117.50146 * 128.62217 * 21 2 1 23 23 C 1.52997 * 117.49869 * 59.99713 * 21 2 1 24 24 H 1.08997 * 109.47439 * 299.99809 * 1 2 3 25 25 H 1.09007 * 109.47147 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47342 * 60.00165 * 1 2 3 27 27 H 1.09000 * 109.47041 * 55.00231 * 4 2 1 28 28 H 1.09001 * 109.47215 * 174.99775 * 4 2 1 29 29 H 1.00905 * 111.00082 * 56.04773 * 5 4 2 30 30 H 1.09009 * 109.47273 * 300.00468 * 6 5 4 31 31 H 1.09004 * 109.47159 * 59.99944 * 6 5 4 32 32 H 1.08005 * 119.87157 * 359.97438 * 8 7 6 33 33 H 1.08007 * 120.12632 * 180.27937 * 9 8 7 34 34 H 0.97001 * 119.99845 * 179.97438 * 14 13 11 35 35 H 1.08001 * 120.12459 * 179.97438 * 19 10 9 36 36 H 1.07998 * 119.87081 * 180.02562 * 20 19 10 37 37 H 1.08997 * 115.54830 * 274.33133 * 21 2 1 38 38 H 1.09003 * 117.49724 * 359.97438 * 22 21 2 39 39 H 1.08998 * 117.49993 * 145.02011 * 22 21 2 40 40 H 1.08998 * 117.49927 * 214.98148 * 23 21 2 41 41 H 1.09002 * 117.49875 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6514 0.0374 2.4456 6 6 2.1248 -0.6271 3.6672 7 6 1.7078 0.1781 4.8708 8 6 2.5484 1.1641 5.3638 9 6 2.1754 1.9094 6.4589 10 6 0.9408 1.6592 7.0859 11 6 0.5499 2.4141 8.2157 12 1 -0.1572 2.0034 8.9213 13 6 1.0793 3.6933 8.4200 14 7 1.6448 4.3330 7.4288 15 14 0.9784 4.4875 10.1077 16 1 1.6936 3.6413 11.0964 17 1 1.6065 5.8324 10.0603 18 1 -0.4454 4.6204 10.5079 19 6 0.0981 0.6519 6.5804 20 6 0.4892 -0.0771 5.4807 21 6 2.0400 -0.7212 -1.2493 22 6 3.0741 0.0051 -2.1117 23 6 1.6357 -0.1495 -2.6096 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 1.6054 -1.7198 1.2951 28 1 3.1263 -0.7995 1.2055 29 1 0.6528 0.1793 2.4753 30 1 1.6904 -1.6250 3.7297 31 1 3.2117 -0.7051 3.6405 32 1 3.4979 1.3508 4.8840 33 1 2.8299 2.6801 6.8385 34 1 2.0115 5.2198 7.5702 35 1 -0.8515 0.4513 7.0541 36 1 -0.1561 -0.8504 5.0907 37 1 2.1267 -1.8044 -1.1642 38 1 3.3908 0.9971 -1.7893 39 1 3.8415 -0.6002 -2.5942 40 1 1.4568 -0.8566 -3.4196 41 1 1.0067 0.7407 -2.6146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398998259.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:15 Heat of formation + Delta-G solvation = 8.997492 kcal Electronic energy + Delta-G solvation = -18342.443399 eV Core-core repulsion = 15607.041983 eV Total energy + Delta-G solvation = -2735.401416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.71623 -39.14422 -36.92810 -35.46178 -33.25697 -31.41259 -31.04320 -28.33706 -26.69615 -24.79487 -23.09546 -22.94580 -22.73352 -21.67959 -20.59633 -19.20389 -17.37456 -17.13407 -16.29993 -15.98490 -15.88913 -15.59911 -15.26402 -14.76604 -14.57447 -14.22657 -14.05582 -13.78503 -13.36980 -13.30620 -13.19225 -12.73841 -12.63927 -12.39663 -12.36342 -12.22144 -12.04889 -11.92585 -11.59489 -11.42205 -11.22690 -11.04078 -10.95373 -10.75080 -9.34251 -9.33007 -9.10449 -8.61947 -6.31939 0.97131 1.16923 1.37838 1.49206 1.53889 2.21257 2.70421 2.94256 3.37858 3.78073 3.93565 3.99506 4.04006 4.19846 4.30958 4.35469 4.42005 4.49914 4.59003 4.65256 4.68536 4.81614 4.82712 4.85493 4.93555 5.05114 5.07408 5.08448 5.17347 5.23921 5.30465 5.39074 5.40492 5.48563 5.51912 5.73081 5.96436 6.11755 6.20629 6.31568 6.40958 6.56121 6.72933 6.95901 7.06395 8.34647 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037643 B = 0.003331 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.647991 B = 8404.135240 C = 8623.990042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 H 0.062 0.938 4 C 0.069 3.931 5 N -0.697 5.697 6 C 0.131 3.869 7 C -0.201 4.201 8 C -0.087 4.087 9 C -0.192 4.192 10 C 0.079 3.921 11 C -0.504 4.504 12 H 0.074 0.926 13 C 0.034 3.966 14 N -0.826 5.826 15 Si 0.982 3.018 16 H -0.261 1.261 17 H -0.267 1.267 18 H -0.259 1.259 19 C -0.243 4.243 20 C -0.085 4.085 21 C -0.151 4.151 22 C -0.184 4.184 23 C -0.174 4.174 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.339 0.661 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.287 0.713 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 -7.561 -14.125 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 H 0.081 0.919 4 C -0.060 4.060 5 N -0.329 5.329 6 C 0.003 3.997 7 C -0.203 4.203 8 C -0.106 4.106 9 C -0.211 4.211 10 C 0.076 3.924 11 C -0.533 4.533 12 H 0.093 0.907 13 C -0.181 4.181 14 N -0.451 5.451 15 Si 0.803 3.197 16 H -0.185 1.185 17 H -0.192 1.192 18 H -0.183 1.183 19 C -0.263 4.263 20 C -0.103 4.103 21 C -0.169 4.169 22 C -0.221 4.221 23 C -0.211 4.211 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.158 0.842 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.434 -6.920 -14.243 15.900 hybrid contribution -0.612 -0.044 0.909 1.097 sum 0.821 -6.964 -13.334 15.066 Atomic orbital electron populations 1.21803 0.94746 1.01938 1.01693 1.20646 0.95856 0.98788 0.92116 0.91927 1.21964 1.00360 0.94528 0.89104 1.60564 1.19963 1.50857 1.01567 1.20455 0.99320 0.93306 0.86592 1.19353 0.97181 1.02861 1.00861 1.20732 0.98540 0.95489 0.95806 1.21270 0.97507 1.02461 0.99879 1.17968 0.90989 0.91274 0.92128 1.19817 1.24839 1.00494 1.08171 0.90744 1.26774 0.92176 0.97256 1.01859 1.69890 1.29069 1.12699 1.33489 0.85258 0.79801 0.77437 0.77222 1.18513 1.19174 1.18328 1.21150 0.99994 1.03860 1.01292 1.20681 0.95704 0.98477 0.95477 1.22249 1.04291 0.99231 0.91177 1.23075 0.92925 1.01983 1.04109 1.22987 0.97789 1.03390 0.96914 0.93400 0.92261 0.91832 0.94860 0.91437 0.84212 0.94768 0.91453 0.88195 0.88419 0.90204 0.88626 0.86740 0.87360 0.89431 0.87964 0.87723 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.80 71.98 0.63 -2.31 16 2 C -0.06 -1.19 2.75 -10.79 -0.03 -1.22 16 3 H 0.06 1.57 7.90 -2.39 -0.02 1.55 16 4 C 0.07 1.69 5.13 86.30 0.44 2.13 16 5 N -0.70 -21.63 6.49 -517.94 -3.36 -25.00 16 6 C 0.13 4.42 5.80 85.56 0.50 4.91 16 7 C -0.20 -8.58 5.41 -19.68 -0.11 -8.69 16 8 C -0.09 -4.16 9.67 22.22 0.21 -3.95 16 9 C -0.19 -10.46 8.70 22.73 0.20 -10.26 16 10 C 0.08 4.39 5.58 -21.29 -0.12 4.27 16 11 C -0.50 -28.00 9.05 23.46 0.21 -27.79 16 12 H 0.07 3.98 7.91 -2.91 -0.02 3.95 16 13 C 0.03 1.77 5.14 85.26 0.44 2.21 16 14 N -0.83 -44.59 10.95 21.83 0.24 -44.35 16 15 Si 0.98 39.11 29.60 68.60 2.03 41.14 16 16 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 17 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 18 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 19 C -0.24 -12.21 9.80 22.73 0.22 -11.99 16 20 C -0.08 -3.71 9.67 22.22 0.21 -3.49 16 21 C -0.15 -2.67 5.15 -10.79 -0.06 -2.72 16 22 C -0.18 -3.06 10.18 30.59 0.31 -2.75 16 23 C -0.17 -2.68 9.73 30.59 0.30 -2.39 16 24 H 0.05 1.10 6.68 -2.39 -0.02 1.08 16 25 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 26 H 0.06 1.16 7.29 -2.38 -0.02 1.15 16 27 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.34 10.60 6.97 -89.69 -0.63 9.97 16 30 H 0.03 1.05 8.08 -2.38 -0.02 1.03 16 31 H 0.07 2.20 8.08 -2.38 -0.02 2.18 16 32 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 33 H 0.10 5.60 6.16 -2.91 -0.02 5.58 16 34 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 35 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 36 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 37 H 0.11 1.77 8.11 -2.39 -0.02 1.75 16 38 H 0.09 1.58 8.05 -2.39 -0.02 1.56 16 39 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 41 H 0.09 1.46 7.61 -2.39 -0.02 1.44 16 Total: -1.00 -59.09 334.92 2.65 -56.44 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: 0.37 Total: 35.81 kcal Atomic # 6 Polarization: -67.41 SS G_CDS: 3.37 Total: -64.03 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: -3.12 Total: -69.35 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -59.09 2.65 -56.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398998259.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.432 kcal (2) G-P(sol) polarization free energy of solvation -59.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds