Wall clock time and date at job start Mon Mar 30 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46958 * 2 1 4 4 N 1.46900 * 109.47085 * 119.99717 * 2 1 3 5 5 C 1.46906 * 110.99938 * 275.00163 * 4 2 1 6 6 C 1.50696 * 109.47039 * 179.97438 * 5 4 2 7 7 C 1.38639 * 119.74723 * 89.99878 * 6 5 4 8 8 C 1.37622 * 120.24860 * 180.27284 * 7 6 5 9 9 C 1.40715 * 119.74171 * 359.52374 * 8 7 6 10 10 C 1.41399 * 120.24183 * 180.22515 * 9 8 7 11 11 H 1.07996 * 120.00044 * 204.52621 * 10 9 8 12 12 C 1.39950 * 119.99773 * 24.53568 * 10 9 8 13 13 N 1.30821 * 119.99991 * 17.71280 * 12 10 9 14 14 Si 1.86800 * 119.99756 * 197.70913 * 12 10 9 15 15 H 1.48502 * 109.46794 * 89.99841 * 14 12 10 16 16 H 1.48499 * 109.47177 * 209.99507 * 14 12 10 17 17 H 1.48492 * 109.47228 * 330.00168 * 14 12 10 18 18 C 1.40715 * 119.51175 * 0.47555 * 9 8 7 19 19 C 1.37615 * 119.74353 * 359.75047 * 18 9 8 20 20 C 1.52996 * 109.46986 * 239.99542 * 2 1 3 21 21 C 1.53784 * 113.61465 * 159.13704 * 20 2 1 22 22 C 1.53950 * 87.01811 * 220.04946 * 21 20 2 23 23 C 1.53781 * 87.11549 * 25.36198 * 22 21 20 24 24 H 1.09001 * 109.47206 * 300.00302 * 1 2 3 25 25 H 1.08996 * 109.47258 * 60.00302 * 1 2 3 26 26 H 1.08998 * 109.47303 * 180.02562 * 1 2 3 27 27 H 1.00892 * 111.00196 * 151.04605 * 4 2 1 28 28 H 1.09001 * 109.47295 * 59.99652 * 5 4 2 29 29 H 1.09000 * 109.46602 * 299.99827 * 5 4 2 30 30 H 1.08000 * 119.87572 * 359.97438 * 7 6 5 31 31 H 1.08002 * 120.12750 * 179.72105 * 8 7 6 32 32 H 0.97005 * 119.99803 * 180.02562 * 13 12 10 33 33 H 1.08000 * 120.12426 * 179.73134 * 18 9 8 34 34 H 1.08002 * 119.87199 * 180.02562 * 19 18 9 35 35 H 1.09001 * 112.84764 * 290.33425 * 20 2 1 36 36 H 1.09001 * 113.61308 * 334.57112 * 21 20 2 37 37 H 1.08997 * 113.61344 * 105.46578 * 21 20 2 38 38 H 1.08999 * 113.53475 * 270.80467 * 22 21 20 39 39 H 1.09004 * 113.74201 * 139.95000 * 22 21 20 40 40 H 1.08999 * 113.61222 * 220.08964 * 23 22 21 41 41 H 1.09001 * 113.61056 * 89.18464 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5873 -0.5216 3.5561 7 6 3.9484 -0.5711 3.8146 8 6 4.4212 -1.2526 4.9128 9 6 3.5164 -1.8922 5.7802 10 6 3.9902 -2.5914 6.9142 11 1 3.3985 -3.3854 7.3452 12 6 5.2259 -2.2544 7.4781 13 7 5.7798 -1.1025 7.1992 14 14 6.0843 -3.4493 8.6292 15 1 6.9683 -4.3461 7.8421 16 1 6.8980 -2.6909 9.6129 17 1 5.0689 -4.2607 9.3472 18 6 2.1370 -1.8354 5.5077 19 6 1.6872 -1.1520 4.4012 20 6 2.0400 -0.7213 -1.2492 21 6 3.4867 -0.3578 -1.6230 22 6 3.0233 -0.3621 -3.0911 23 6 1.6120 -0.0511 -2.5654 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 2.9172 -1.1204 1.0288 28 1 1.0870 0.6165 2.5525 29 1 2.7588 1.0463 2.1181 30 1 4.6407 -0.0770 3.1491 31 1 5.4823 -1.2937 5.1098 32 1 6.6365 -0.8690 7.5899 33 1 1.4342 -2.3264 6.1644 34 1 0.6290 -1.1067 4.1904 35 1 1.8519 -1.7947 -1.2245 36 1 3.7963 0.6244 -1.2658 37 1 4.2080 -1.1408 -1.3894 38 1 3.1055 -1.3375 -3.5706 39 1 3.4533 0.4411 -3.6895 40 1 0.8221 -0.5870 -3.0916 41 1 1.4082 1.0151 -2.4663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399001531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:31 Heat of formation + Delta-G solvation = 18.767212 kcal Electronic energy + Delta-G solvation = -18655.621660 eV Core-core repulsion = 15920.643891 eV Total energy + Delta-G solvation = -2734.977769 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.35621 -37.65724 -35.49040 -33.62151 -31.14238 -29.27110 -28.96991 -26.56090 -25.41370 -25.26385 -23.00703 -20.94522 -20.68645 -19.91608 -19.31544 -17.25702 -16.12315 -15.56211 -15.19872 -14.77621 -14.23795 -14.11319 -13.65883 -13.44829 -12.94149 -12.58248 -12.50616 -12.36269 -12.04338 -11.92085 -11.78368 -11.67676 -11.40410 -11.14827 -10.95824 -10.94563 -10.54599 -10.48602 -10.40645 -10.20511 -10.02466 -9.50424 -9.34784 -9.10447 -7.97688 -7.40853 -7.25664 -6.73782 -4.31991 2.76957 3.07971 3.12013 3.12614 3.21078 3.94895 4.36367 4.53703 4.61193 4.65572 4.76851 4.96090 5.25348 5.40281 5.59488 5.62803 5.64166 5.75242 5.76409 5.77670 5.85187 5.90111 5.98072 6.01305 6.10870 6.19238 6.33769 6.36918 6.44474 6.46499 6.51726 6.98124 7.10671 7.31698 7.41910 7.52237 7.65501 7.83930 7.94293 8.09212 8.19024 8.34255 8.67608 8.93028 9.01667 10.20855 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035840 B = 0.003692 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.063925 B = 7581.539247 C = 8015.242833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.091 3.909 3 H 0.036 0.964 4 N -0.679 5.679 5 C 0.125 3.875 6 C -0.212 4.212 7 C -0.096 4.096 8 C -0.166 4.166 9 C 0.112 3.888 10 C -0.464 4.464 11 H 0.077 0.923 12 C 0.076 3.924 13 N -0.794 5.794 14 Si 0.908 3.092 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.262 1.262 18 C -0.228 4.228 19 C -0.069 4.069 20 C -0.110 4.110 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.132 4.132 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.340 0.660 28 H 0.060 0.940 29 H 0.017 0.983 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.279 0.721 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.761 2.322 -14.134 14.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.019 4.019 3 H 0.054 0.946 4 N -0.311 5.311 5 C -0.003 4.003 6 C -0.213 4.213 7 C -0.115 4.115 8 C -0.185 4.185 9 C 0.110 3.890 10 C -0.494 4.494 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.420 5.420 14 Si 0.732 3.268 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.186 1.186 18 C -0.248 4.248 19 C -0.088 4.088 20 C -0.128 4.128 21 C -0.180 4.180 22 C -0.180 4.180 23 C -0.171 4.171 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.158 0.842 28 H 0.078 0.922 29 H 0.035 0.965 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.182 2.240 -13.895 14.682 hybrid contribution 1.263 0.111 0.402 1.330 sum -2.919 2.351 -13.493 14.004 Atomic orbital electron populations 1.21744 0.95074 1.02071 1.00572 1.21514 0.95680 0.95309 0.89421 0.94588 1.60689 1.33571 1.33432 1.03387 1.20581 0.98738 0.92027 0.88928 1.18909 0.93418 1.09958 0.99062 1.20521 0.93733 0.99754 0.97448 1.21272 0.99746 1.02856 0.94645 1.17621 0.90641 0.89398 0.91381 1.19610 1.02347 1.16637 1.10761 0.90491 1.25907 0.96946 0.94731 0.96563 1.69835 1.16102 1.18683 1.37374 0.86326 0.79691 0.80975 0.79796 1.19301 1.20375 1.18631 1.20977 0.95267 1.08119 1.00443 1.20325 0.96670 0.97161 0.94616 1.22726 0.95722 1.00648 0.93721 1.23016 0.96838 1.01870 0.96236 1.22822 0.97016 1.01626 0.96496 1.22883 0.96799 1.00777 0.96592 0.92965 0.93186 0.92205 0.84169 0.92167 0.96502 0.89995 0.86599 0.90963 0.89148 0.89522 0.88621 0.90404 0.91372 0.90346 0.91771 0.91619 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.23 37.16 0.34 -1.33 16 2 C 0.09 1.17 2.41 -67.71 -0.16 1.01 16 3 H 0.04 0.48 7.63 -51.93 -0.40 0.09 16 4 N -0.68 -10.88 6.30 -107.99 -0.68 -11.56 16 5 C 0.13 2.25 5.60 -4.97 -0.03 2.22 16 6 C -0.21 -4.65 5.41 -104.33 -0.56 -5.22 16 7 C -0.10 -2.24 9.67 -39.66 -0.38 -2.62 16 8 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 9 C 0.11 3.03 5.57 -106.82 -0.60 2.44 16 10 C -0.46 -12.50 9.06 -37.74 -0.34 -12.84 16 11 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 12 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 13 N -0.79 -20.74 10.95 55.55 0.61 -20.13 16 14 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 15 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 16 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 17 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 18 C -0.23 -5.74 9.80 -38.87 -0.38 -6.12 16 19 C -0.07 -1.58 9.67 -39.67 -0.38 -1.97 16 20 C -0.11 -1.21 3.12 -89.81 -0.28 -1.49 16 21 C -0.14 -1.49 7.50 -25.83 -0.19 -1.69 16 22 C -0.14 -1.27 8.09 -25.83 -0.21 -1.48 16 23 C -0.13 -1.23 6.75 -25.92 -0.17 -1.41 16 24 H 0.05 0.67 7.45 -51.93 -0.39 0.29 16 25 H 0.05 0.51 7.50 -51.93 -0.39 0.12 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.34 5.53 8.23 -39.30 -0.32 5.21 16 28 H 0.06 1.06 7.37 -51.93 -0.38 0.68 16 29 H 0.02 0.30 7.99 -51.93 -0.42 -0.12 16 30 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 32 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 33 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 35 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 0.84 7.99 -51.93 -0.41 0.43 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 331.54 15.07 5.00 5.00 Total: -1.00 -26.89 331.54 -10.70 -37.59 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.81 Total: 8.62 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: -3.78 Total: -33.33 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: -0.07 Total: -31.69 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.89 -10.70 -37.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399001531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.357 kcal (2) G-P(sol) polarization free energy of solvation -26.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds