Wall clock time and date at job start Mon Mar 30 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46958 * 2 1 4 4 N 1.46900 * 109.47085 * 119.99717 * 2 1 3 5 5 C 1.46906 * 110.99938 * 275.00163 * 4 2 1 6 6 C 1.50696 * 109.47039 * 179.97438 * 5 4 2 7 7 C 1.38639 * 119.74723 * 89.99878 * 6 5 4 8 8 C 1.37622 * 120.24860 * 180.27284 * 7 6 5 9 9 C 1.40715 * 119.74171 * 359.52374 * 8 7 6 10 10 C 1.41399 * 120.24183 * 180.22515 * 9 8 7 11 11 H 1.07996 * 120.00044 * 204.52621 * 10 9 8 12 12 C 1.39950 * 119.99773 * 24.53568 * 10 9 8 13 13 N 1.30821 * 119.99991 * 17.71280 * 12 10 9 14 14 Si 1.86800 * 119.99756 * 197.70913 * 12 10 9 15 15 H 1.48502 * 109.46794 * 89.99841 * 14 12 10 16 16 H 1.48499 * 109.47177 * 209.99507 * 14 12 10 17 17 H 1.48492 * 109.47228 * 330.00168 * 14 12 10 18 18 C 1.40715 * 119.51175 * 0.47555 * 9 8 7 19 19 C 1.37615 * 119.74353 * 359.75047 * 18 9 8 20 20 C 1.52996 * 109.46986 * 239.99542 * 2 1 3 21 21 C 1.53784 * 113.61465 * 159.13704 * 20 2 1 22 22 C 1.53950 * 87.01811 * 220.04946 * 21 20 2 23 23 C 1.53781 * 87.11549 * 25.36198 * 22 21 20 24 24 H 1.09001 * 109.47206 * 300.00302 * 1 2 3 25 25 H 1.08996 * 109.47258 * 60.00302 * 1 2 3 26 26 H 1.08998 * 109.47303 * 180.02562 * 1 2 3 27 27 H 1.00892 * 111.00196 * 151.04605 * 4 2 1 28 28 H 1.09001 * 109.47295 * 59.99652 * 5 4 2 29 29 H 1.09000 * 109.46602 * 299.99827 * 5 4 2 30 30 H 1.08000 * 119.87572 * 359.97438 * 7 6 5 31 31 H 1.08002 * 120.12750 * 179.72105 * 8 7 6 32 32 H 0.97005 * 119.99803 * 180.02562 * 13 12 10 33 33 H 1.08000 * 120.12426 * 179.73134 * 18 9 8 34 34 H 1.08002 * 119.87199 * 180.02562 * 19 18 9 35 35 H 1.09001 * 112.84764 * 290.33425 * 20 2 1 36 36 H 1.09001 * 113.61308 * 334.57112 * 21 20 2 37 37 H 1.08997 * 113.61344 * 105.46578 * 21 20 2 38 38 H 1.08999 * 113.53475 * 270.80467 * 22 21 20 39 39 H 1.09004 * 113.74201 * 139.95000 * 22 21 20 40 40 H 1.08999 * 113.61222 * 220.08964 * 23 22 21 41 41 H 1.09001 * 113.61056 * 89.18464 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5873 -0.5216 3.5561 7 6 3.9484 -0.5711 3.8146 8 6 4.4212 -1.2526 4.9128 9 6 3.5164 -1.8922 5.7802 10 6 3.9902 -2.5914 6.9142 11 1 3.3985 -3.3854 7.3452 12 6 5.2259 -2.2544 7.4781 13 7 5.7798 -1.1025 7.1992 14 14 6.0843 -3.4493 8.6292 15 1 6.9683 -4.3461 7.8421 16 1 6.8980 -2.6909 9.6129 17 1 5.0689 -4.2607 9.3472 18 6 2.1370 -1.8354 5.5077 19 6 1.6872 -1.1520 4.4012 20 6 2.0400 -0.7213 -1.2492 21 6 3.4867 -0.3578 -1.6230 22 6 3.0233 -0.3621 -3.0911 23 6 1.6120 -0.0511 -2.5654 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 2.9172 -1.1204 1.0288 28 1 1.0870 0.6165 2.5525 29 1 2.7588 1.0463 2.1181 30 1 4.6407 -0.0770 3.1491 31 1 5.4823 -1.2937 5.1098 32 1 6.6365 -0.8690 7.5899 33 1 1.4342 -2.3264 6.1644 34 1 0.6290 -1.1067 4.1904 35 1 1.8519 -1.7947 -1.2245 36 1 3.7963 0.6244 -1.2658 37 1 4.2080 -1.1408 -1.3894 38 1 3.1055 -1.3375 -3.5706 39 1 3.4533 0.4411 -3.6895 40 1 0.8221 -0.5870 -3.0916 41 1 1.4082 1.0151 -2.4663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399001531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:31 Heat of formation + Delta-G solvation = 5.881664 kcal Electronic energy + Delta-G solvation = -18656.180419 eV Core-core repulsion = 15920.643891 eV Total energy + Delta-G solvation = -2735.536528 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.28958 -39.43309 -36.83076 -35.39256 -32.67559 -31.15718 -30.50489 -27.97805 -26.59945 -26.10133 -24.58273 -22.86688 -21.74448 -21.59665 -20.22800 -19.20815 -17.42934 -16.96525 -16.45970 -15.97125 -15.72395 -15.59074 -15.29905 -14.99490 -14.32647 -13.92297 -13.79031 -13.60802 -13.34867 -13.28955 -13.12279 -13.05643 -12.75605 -12.58727 -12.46434 -12.38475 -12.00589 -11.97319 -11.40898 -11.34363 -11.24989 -11.05276 -11.01267 -10.90406 -9.39156 -9.25401 -9.13058 -8.63254 -6.32587 0.95359 1.16928 1.37768 1.51077 1.51854 2.21115 2.70027 3.34826 3.71887 3.77250 3.80640 3.95153 4.02914 4.28755 4.33154 4.40762 4.44690 4.58410 4.67207 4.73782 4.79525 4.86520 4.88343 4.93146 5.03354 5.04973 5.08193 5.14068 5.14864 5.17437 5.37407 5.39031 5.45025 5.49280 5.63608 5.72452 5.97813 6.11601 6.23837 6.31466 6.41197 6.58515 6.71707 6.95528 7.05560 8.33881 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035840 B = 0.003692 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.063925 B = 7581.539247 C = 8015.242833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.092 3.908 3 H 0.037 0.963 4 N -0.686 5.686 5 C 0.133 3.867 6 C -0.199 4.199 7 C -0.098 4.098 8 C -0.189 4.189 9 C 0.079 3.921 10 C -0.504 4.504 11 H 0.073 0.927 12 C 0.035 3.965 13 N -0.826 5.826 14 Si 0.983 3.017 15 H -0.262 1.262 16 H -0.267 1.267 17 H -0.259 1.259 18 C -0.245 4.245 19 C -0.073 4.073 20 C -0.111 4.111 21 C -0.147 4.147 22 C -0.136 4.136 23 C -0.125 4.125 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.337 0.663 28 H 0.069 0.931 29 H 0.024 0.976 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.287 0.713 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.187 2.644 -15.649 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.018 4.018 3 H 0.055 0.945 4 N -0.317 5.317 5 C 0.005 3.995 6 C -0.201 4.201 7 C -0.117 4.117 8 C -0.209 4.209 9 C 0.077 3.923 10 C -0.533 4.533 11 H 0.091 0.909 12 C -0.179 4.179 13 N -0.453 5.453 14 Si 0.803 3.197 15 H -0.187 1.187 16 H -0.191 1.191 17 H -0.183 1.183 18 C -0.265 4.265 19 C -0.091 4.091 20 C -0.130 4.130 21 C -0.184 4.184 22 C -0.173 4.173 23 C -0.163 4.163 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.155 0.845 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.625 2.572 -15.430 16.312 hybrid contribution 1.313 0.086 0.751 1.515 sum -3.313 2.658 -14.679 15.281 Atomic orbital electron populations 1.21730 0.94325 1.01836 1.01275 1.21599 0.96158 0.95220 0.88793 0.94484 1.60630 1.33474 1.33436 1.04168 1.20463 0.99102 0.91870 0.88057 1.19339 0.92673 1.08252 0.99813 1.20765 0.95010 0.99116 0.96821 1.21246 0.98974 1.04605 0.96038 1.17961 0.91723 0.90457 0.92135 1.19844 1.04057 1.17584 1.11849 0.90900 1.26755 0.96968 0.96208 0.98010 1.69882 1.16711 1.20123 1.38546 0.85199 0.78393 0.78439 0.77630 1.18679 1.19150 1.18288 1.21176 0.94812 1.08910 1.01560 1.20624 0.98168 0.96433 0.93922 1.22701 0.96337 1.00186 0.93755 1.23039 0.96348 1.01420 0.97627 1.22809 0.96585 1.02380 0.95534 1.22864 0.97296 1.00991 0.95125 0.93802 0.90978 0.92877 0.84467 0.91292 0.95776 0.87967 0.88301 0.90193 0.88816 0.87113 0.89366 0.90767 0.92003 0.89730 0.90799 0.90630 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.23 71.98 0.66 -2.28 16 2 C 0.09 2.17 2.41 44.91 0.11 2.28 16 3 H 0.04 0.90 7.63 -2.39 -0.02 0.88 16 4 N -0.69 -20.77 6.30 -495.58 -3.12 -23.89 16 5 C 0.13 4.54 5.60 85.55 0.48 5.01 16 6 C -0.20 -8.56 5.41 -19.68 -0.11 -8.66 16 7 C -0.10 -4.60 9.67 22.22 0.21 -4.39 16 8 C -0.19 -10.21 8.70 22.73 0.20 -10.02 16 9 C 0.08 4.45 5.57 -21.29 -0.12 4.33 16 10 C -0.50 -28.12 9.06 23.46 0.21 -27.91 16 11 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 12 C 0.04 1.82 5.14 85.26 0.44 2.26 16 13 N -0.83 -44.23 10.95 21.83 0.24 -43.99 16 14 Si 0.98 39.10 29.59 68.60 2.03 41.13 16 15 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 16 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 17 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 18 C -0.25 -12.54 9.80 22.73 0.22 -12.32 16 19 C -0.07 -3.30 9.67 22.21 0.21 -3.09 16 20 C -0.11 -2.23 3.12 -10.27 -0.03 -2.26 16 21 C -0.15 -2.82 7.50 31.18 0.23 -2.59 16 22 C -0.14 -2.09 8.09 31.18 0.25 -1.83 16 23 C -0.12 -1.95 6.75 31.12 0.21 -1.74 16 24 H 0.04 1.03 7.45 -2.39 -0.02 1.01 16 25 H 0.07 1.26 7.50 -2.39 -0.02 1.24 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.34 10.54 8.23 -89.70 -0.74 9.80 16 28 H 0.07 2.25 7.37 -2.39 -0.02 2.23 16 29 H 0.02 0.79 7.99 -2.39 -0.02 0.78 16 30 H 0.10 4.28 8.06 -2.91 -0.02 4.25 16 31 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 32 H 0.29 13.86 8.30 -92.70 -0.77 13.09 16 33 H 0.09 4.58 8.06 -2.91 -0.02 4.56 16 34 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 1.48 7.99 -2.39 -0.02 1.46 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 Total: -1.00 -58.62 331.54 2.60 -56.02 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: 0.26 Total: 33.93 kcal Atomic # 6 Polarization: -66.40 SS G_CDS: 3.19 Total: -63.21 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: -2.88 Total: -67.88 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -58.62 2.60 -56.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399001531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.906 kcal (2) G-P(sol) polarization free energy of solvation -58.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds