Wall clock time and date at job start Mon Mar 30 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47002 * 2 1 4 4 N 1.46895 * 109.47262 * 240.00116 * 2 1 3 5 5 C 1.46897 * 111.00553 * 85.00220 * 4 2 1 6 6 C 1.50694 * 109.47520 * 180.02562 * 5 4 2 7 7 C 1.38646 * 119.74831 * 89.99930 * 6 5 4 8 8 C 1.37617 * 120.24641 * 179.70430 * 7 6 5 9 9 C 1.40717 * 119.74445 * 0.27151 * 8 7 6 10 10 C 1.41399 * 120.23904 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00483 * 333.79301 * 10 9 8 12 12 C 1.39947 * 119.99414 * 153.80156 * 10 9 8 13 13 N 1.30816 * 120.00361 * 342.44241 * 12 10 9 14 14 Si 1.86805 * 119.99546 * 162.44445 * 12 10 9 15 15 H 1.48499 * 109.46753 * 94.98409 * 14 12 10 16 16 H 1.48504 * 109.46772 * 214.97911 * 14 12 10 17 17 H 1.48489 * 109.47252 * 334.98263 * 14 12 10 18 18 C 1.40712 * 119.51220 * 0.02562 * 9 8 7 19 19 C 1.37616 * 119.74805 * 359.97438 * 18 9 8 20 20 C 1.53002 * 109.47232 * 119.99836 * 2 1 3 21 21 C 1.53783 * 113.61180 * 282.81126 * 20 2 1 22 22 C 1.53778 * 87.08155 * 220.01406 * 21 20 2 23 23 C 1.53777 * 113.61479 * 185.31521 * 20 2 1 24 24 H 1.09006 * 109.47008 * 304.24220 * 1 2 3 25 25 H 1.09001 * 109.46839 * 64.23701 * 1 2 3 26 26 H 1.08992 * 109.47369 * 184.23729 * 1 2 3 27 27 H 1.00904 * 110.99930 * 208.95314 * 4 2 1 28 28 H 1.08994 * 109.47184 * 59.99589 * 5 4 2 29 29 H 1.09005 * 109.46798 * 300.00117 * 5 4 2 30 30 H 1.07996 * 119.87133 * 359.97436 * 7 6 5 31 31 H 1.08002 * 120.12585 * 180.29077 * 8 7 6 32 32 H 0.96998 * 120.00107 * 180.02562 * 13 12 10 33 33 H 1.08000 * 120.12447 * 180.02562 * 18 9 8 34 34 H 1.07994 * 119.87746 * 180.02562 * 19 18 9 35 35 H 1.08995 * 112.84489 * 54.11481 * 20 2 1 36 36 H 1.08994 * 113.61983 * 334.56711 * 21 20 2 37 37 H 1.09003 * 113.61514 * 105.47046 * 21 20 2 38 38 H 1.09002 * 113.61974 * 270.88821 * 22 21 20 39 39 H 1.09001 * 113.68979 * 139.98972 * 22 21 20 40 40 H 1.09005 * 113.61084 * 254.52699 * 23 20 2 41 41 H 1.08996 * 113.61889 * 25.34946 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0826 0.2226 -2.3469 6 6 2.5875 -0.5218 -3.5559 7 6 1.6872 -1.1519 -4.4014 8 6 2.1365 -1.8295 -5.5117 9 6 3.5159 -1.8860 -5.7843 10 6 3.9890 -2.5788 -6.9225 11 1 3.4113 -3.3902 -7.3397 12 6 5.2062 -2.2129 -7.5083 13 7 5.7361 -1.0469 -7.2419 14 14 6.0742 -3.3897 -8.6709 15 1 5.7069 -3.0621 -10.0719 16 1 7.5437 -3.2594 -8.5009 17 1 5.6619 -4.7828 -8.3639 18 6 4.4208 -1.2480 -4.9159 19 6 3.9490 -0.5762 -3.8114 20 6 2.0400 -0.7212 1.2493 21 6 1.9508 0.1263 2.5294 22 6 3.3209 -0.4552 2.9158 23 6 3.5681 -0.6647 1.4125 24 1 -0.3633 0.5783 0.8496 25 1 -0.3633 0.4467 -0.9255 26 1 -0.3634 -1.0248 0.0759 27 1 2.9174 -1.1204 -1.0287 28 1 2.7589 1.0461 -2.1182 29 1 1.0872 0.6163 -2.5525 30 1 0.6291 -1.1072 -4.1900 31 1 1.4332 -2.3156 -6.1715 32 1 6.5795 -0.7932 -7.6483 33 1 5.4815 -1.2848 -5.1158 34 1 4.6416 -0.0855 -3.1437 35 1 1.6260 -1.7236 1.3579 36 1 1.9687 1.2002 2.3442 37 1 1.1442 -0.1756 3.1976 38 1 3.2570 -1.3848 3.4815 39 1 3.9927 0.2723 3.3715 40 1 4.0672 -1.6053 1.1790 41 1 4.0284 0.1922 0.9208 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399001535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:34 Heat of formation + Delta-G solvation = 18.492958 kcal Electronic energy + Delta-G solvation = -18691.312716 eV Core-core repulsion = 15956.323055 eV Total energy + Delta-G solvation = -2734.989662 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.37258 -37.65475 -35.47390 -33.61211 -31.16423 -29.28025 -28.98314 -26.52585 -25.39149 -25.31192 -22.98273 -20.95126 -20.68639 -19.89775 -19.35398 -17.25179 -16.10504 -15.56360 -15.19115 -14.81848 -14.24302 -14.14007 -13.67376 -13.44011 -12.82773 -12.55527 -12.47634 -12.33999 -12.07048 -11.91982 -11.82001 -11.75533 -11.43457 -11.13313 -10.96014 -10.91825 -10.57364 -10.47661 -10.42528 -10.20722 -10.00460 -9.50345 -9.35384 -9.10075 -7.97435 -7.41054 -7.24586 -6.73501 -4.31790 2.77133 3.08272 3.11336 3.13127 3.20862 3.95585 4.34025 4.54960 4.61463 4.65945 4.77870 4.99570 5.25702 5.37276 5.58387 5.63563 5.64610 5.74280 5.76538 5.77535 5.85728 5.90492 5.97693 6.02689 6.10450 6.19352 6.32851 6.36138 6.43454 6.46073 6.52474 6.97631 7.11303 7.30456 7.40852 7.51820 7.65588 7.84045 7.93662 8.08948 8.17926 8.34297 8.67300 8.93085 9.01361 10.22073 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034712 B = 0.003766 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.435668 B = 7432.526223 C = 7894.979276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.090 3.910 3 H 0.036 0.964 4 N -0.680 5.680 5 C 0.125 3.875 6 C -0.211 4.211 7 C -0.069 4.069 8 C -0.227 4.227 9 C 0.113 3.887 10 C -0.466 4.466 11 H 0.077 0.923 12 C 0.077 3.923 13 N -0.796 5.796 14 Si 0.906 3.094 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.261 1.261 18 C -0.164 4.164 19 C -0.096 4.096 20 C -0.108 4.108 21 C -0.134 4.134 22 C -0.142 4.142 23 C -0.142 4.142 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.340 0.660 28 H 0.017 0.983 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.279 0.721 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 2.236 14.094 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 H 0.054 0.946 4 N -0.312 5.312 5 C -0.003 4.003 6 C -0.212 4.212 7 C -0.088 4.088 8 C -0.247 4.247 9 C 0.111 3.889 10 C -0.495 4.495 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.421 5.421 14 Si 0.730 3.270 15 H -0.196 1.196 16 H -0.201 1.201 17 H -0.184 1.184 18 C -0.183 4.183 19 C -0.115 4.115 20 C -0.127 4.127 21 C -0.172 4.172 22 C -0.179 4.179 23 C -0.180 4.180 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.159 0.841 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.972 2.154 13.857 14.575 hybrid contribution 1.261 0.133 -0.422 1.337 sum -2.710 2.287 13.435 13.895 Atomic orbital electron populations 1.21741 0.95055 1.01867 1.00754 1.21514 0.95687 0.95305 0.89466 0.94574 1.60659 1.33682 1.33441 1.03370 1.20586 0.98759 0.92034 0.88919 1.18918 0.93389 1.09845 0.99077 1.20336 0.96693 0.97177 0.94611 1.20995 0.95285 1.08136 1.00255 1.17612 0.90616 0.89292 0.91391 1.19583 1.03709 1.15737 1.10513 0.90508 1.25889 0.96810 0.94693 0.96665 1.69828 1.17202 1.17886 1.37205 0.86348 0.78728 0.81727 0.80207 1.19638 1.20087 1.18437 1.21217 0.99596 1.03038 0.94493 1.20510 0.93741 0.99796 0.97423 1.22725 0.95838 0.99981 0.94143 1.22911 0.97380 0.99646 0.97247 1.22788 0.97474 1.01010 0.96629 1.22947 0.96476 1.02258 0.96313 0.93284 0.92807 0.92302 0.84086 0.96504 0.92137 0.89493 0.89119 0.90988 0.86836 0.89987 0.88752 0.90334 0.91661 0.90326 0.91753 0.91237 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.37 37.16 0.35 -1.32 16 2 C 0.09 1.17 2.34 -67.71 -0.16 1.01 16 3 H 0.04 0.48 7.71 -51.92 -0.40 0.08 16 4 N -0.68 -10.88 6.30 -108.00 -0.68 -11.57 16 5 C 0.12 2.24 5.60 -4.98 -0.03 2.22 16 6 C -0.21 -4.62 5.42 -104.33 -0.56 -5.18 16 7 C -0.07 -1.59 9.67 -39.66 -0.38 -1.98 16 8 C -0.23 -5.70 9.80 -38.87 -0.38 -6.08 16 9 C 0.11 3.07 5.55 -106.82 -0.59 2.47 16 10 C -0.47 -12.55 9.05 -37.74 -0.34 -12.89 16 11 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 12 C 0.08 1.95 5.13 -17.34 -0.09 1.86 16 13 N -0.80 -20.82 11.06 55.55 0.61 -20.20 16 14 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 15 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 16 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 18 C -0.16 -4.30 8.69 -38.88 -0.34 -4.63 16 19 C -0.10 -2.24 9.67 -39.66 -0.38 -2.62 16 20 C -0.11 -1.20 3.21 -89.81 -0.29 -1.49 16 21 C -0.13 -1.25 7.55 -25.92 -0.20 -1.45 16 22 C -0.14 -1.29 8.08 -25.92 -0.21 -1.50 16 23 C -0.14 -1.53 6.76 -25.92 -0.18 -1.70 16 24 H 0.05 0.51 8.13 -51.93 -0.42 0.08 16 25 H 0.05 0.70 7.37 -51.93 -0.38 0.32 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.34 5.54 7.59 -39.29 -0.30 5.24 16 28 H 0.02 0.30 8.00 -51.93 -0.42 -0.12 16 29 H 0.06 1.06 7.31 -51.93 -0.38 0.68 16 30 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 32 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 33 H 0.11 3.07 6.28 -52.49 -0.33 2.74 16 34 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -26.95 331.89 -10.70 -37.65 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.82 Total: 8.59 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: -3.78 Total: -33.28 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: -0.07 Total: -31.77 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.95 -10.70 -37.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399001535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.142 kcal (2) G-P(sol) polarization free energy of solvation -26.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds