Wall clock time and date at job start Mon Mar 30 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47002 * 2 1 4 4 N 1.46895 * 109.47262 * 240.00116 * 2 1 3 5 5 C 1.46897 * 111.00553 * 85.00220 * 4 2 1 6 6 C 1.50694 * 109.47520 * 180.02562 * 5 4 2 7 7 C 1.38646 * 119.74831 * 89.99930 * 6 5 4 8 8 C 1.37617 * 120.24641 * 179.70430 * 7 6 5 9 9 C 1.40717 * 119.74445 * 0.27151 * 8 7 6 10 10 C 1.41399 * 120.23904 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00483 * 333.79301 * 10 9 8 12 12 C 1.39947 * 119.99414 * 153.80156 * 10 9 8 13 13 N 1.30816 * 120.00361 * 342.44241 * 12 10 9 14 14 Si 1.86805 * 119.99546 * 162.44445 * 12 10 9 15 15 H 1.48499 * 109.46753 * 94.98409 * 14 12 10 16 16 H 1.48504 * 109.46772 * 214.97911 * 14 12 10 17 17 H 1.48489 * 109.47252 * 334.98263 * 14 12 10 18 18 C 1.40712 * 119.51220 * 0.02562 * 9 8 7 19 19 C 1.37616 * 119.74805 * 359.97438 * 18 9 8 20 20 C 1.53002 * 109.47232 * 119.99836 * 2 1 3 21 21 C 1.53783 * 113.61180 * 282.81126 * 20 2 1 22 22 C 1.53778 * 87.08155 * 220.01406 * 21 20 2 23 23 C 1.53777 * 113.61479 * 185.31521 * 20 2 1 24 24 H 1.09006 * 109.47008 * 304.24220 * 1 2 3 25 25 H 1.09001 * 109.46839 * 64.23701 * 1 2 3 26 26 H 1.08992 * 109.47369 * 184.23729 * 1 2 3 27 27 H 1.00904 * 110.99930 * 208.95314 * 4 2 1 28 28 H 1.08994 * 109.47184 * 59.99589 * 5 4 2 29 29 H 1.09005 * 109.46798 * 300.00117 * 5 4 2 30 30 H 1.07996 * 119.87133 * 359.97436 * 7 6 5 31 31 H 1.08002 * 120.12585 * 180.29077 * 8 7 6 32 32 H 0.96998 * 120.00107 * 180.02562 * 13 12 10 33 33 H 1.08000 * 120.12447 * 180.02562 * 18 9 8 34 34 H 1.07994 * 119.87746 * 180.02562 * 19 18 9 35 35 H 1.08995 * 112.84489 * 54.11481 * 20 2 1 36 36 H 1.08994 * 113.61983 * 334.56711 * 21 20 2 37 37 H 1.09003 * 113.61514 * 105.47046 * 21 20 2 38 38 H 1.09002 * 113.61974 * 270.88821 * 22 21 20 39 39 H 1.09001 * 113.68979 * 139.98972 * 22 21 20 40 40 H 1.09005 * 113.61084 * 254.52699 * 23 20 2 41 41 H 1.08996 * 113.61889 * 25.34946 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0826 0.2226 -2.3469 6 6 2.5875 -0.5218 -3.5559 7 6 1.6872 -1.1519 -4.4014 8 6 2.1365 -1.8295 -5.5117 9 6 3.5159 -1.8860 -5.7843 10 6 3.9890 -2.5788 -6.9225 11 1 3.4113 -3.3902 -7.3397 12 6 5.2062 -2.2129 -7.5083 13 7 5.7361 -1.0469 -7.2419 14 14 6.0742 -3.3897 -8.6709 15 1 5.7069 -3.0621 -10.0719 16 1 7.5437 -3.2594 -8.5009 17 1 5.6619 -4.7828 -8.3639 18 6 4.4208 -1.2480 -4.9159 19 6 3.9490 -0.5762 -3.8114 20 6 2.0400 -0.7212 1.2493 21 6 1.9508 0.1263 2.5294 22 6 3.3209 -0.4552 2.9158 23 6 3.5681 -0.6647 1.4125 24 1 -0.3633 0.5783 0.8496 25 1 -0.3633 0.4467 -0.9255 26 1 -0.3634 -1.0248 0.0759 27 1 2.9174 -1.1204 -1.0287 28 1 2.7589 1.0461 -2.1182 29 1 1.0872 0.6163 -2.5525 30 1 0.6291 -1.1072 -4.1900 31 1 1.4332 -2.3156 -6.1715 32 1 6.5795 -0.7932 -7.6483 33 1 5.4815 -1.2848 -5.1158 34 1 4.6416 -0.0855 -3.1437 35 1 1.6260 -1.7236 1.3579 36 1 1.9687 1.2002 2.3442 37 1 1.1442 -0.1756 3.1976 38 1 3.2570 -1.3848 3.4815 39 1 3.9927 0.2723 3.3715 40 1 4.0672 -1.6053 1.1790 41 1 4.0284 0.1922 0.9208 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399001535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:34 Heat of formation + Delta-G solvation = 5.612859 kcal Electronic energy + Delta-G solvation = -18691.871239 eV Core-core repulsion = 15956.323055 eV Total energy + Delta-G solvation = -2735.548185 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.31495 -39.42993 -36.81030 -35.38299 -32.69330 -31.16752 -30.52254 -27.96228 -26.54105 -26.18536 -24.55862 -22.87120 -21.73780 -21.59687 -20.25649 -19.20309 -17.42503 -16.95129 -16.45912 -15.97480 -15.74542 -15.63270 -15.32333 -15.00262 -14.31618 -13.83501 -13.76331 -13.61181 -13.32546 -13.27525 -13.12544 -13.06779 -12.73878 -12.68327 -12.50001 -12.38552 -12.02213 -11.98145 -11.42410 -11.34812 -11.24845 -11.06970 -11.00294 -10.88439 -9.38828 -9.25200 -9.12116 -8.63142 -6.32547 0.95539 1.16306 1.37850 1.48415 1.54211 2.21495 2.70501 3.32439 3.73381 3.76089 3.79483 3.96370 4.04329 4.28782 4.31184 4.40598 4.43601 4.58526 4.66793 4.71313 4.79579 4.85365 4.88106 4.94249 5.02724 5.04590 5.08051 5.13727 5.14848 5.17928 5.35909 5.37848 5.44776 5.48511 5.64056 5.72743 5.97114 6.11301 6.23115 6.30908 6.41379 6.58949 6.71425 6.95649 7.05251 8.34938 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034712 B = 0.003766 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.435668 B = 7432.526223 C = 7894.979276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.091 3.909 3 H 0.037 0.963 4 N -0.686 5.686 5 C 0.133 3.867 6 C -0.198 4.198 7 C -0.073 4.073 8 C -0.244 4.244 9 C 0.081 3.919 10 C -0.506 4.506 11 H 0.073 0.927 12 C 0.036 3.964 13 N -0.828 5.828 14 Si 0.981 3.019 15 H -0.262 1.262 16 H -0.265 1.265 17 H -0.260 1.260 18 C -0.187 4.187 19 C -0.098 4.098 20 C -0.109 4.109 21 C -0.126 4.126 22 C -0.135 4.135 23 C -0.148 4.148 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.053 0.947 27 H 0.338 0.662 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.287 0.713 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.966 2.561 15.622 16.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.019 4.019 3 H 0.055 0.945 4 N -0.318 5.318 5 C 0.005 3.995 6 C -0.199 4.199 7 C -0.092 4.092 8 C -0.263 4.263 9 C 0.078 3.922 10 C -0.536 4.536 11 H 0.091 0.909 12 C -0.178 4.178 13 N -0.455 5.455 14 Si 0.802 3.198 15 H -0.187 1.187 16 H -0.190 1.190 17 H -0.183 1.183 18 C -0.207 4.207 19 C -0.117 4.117 20 C -0.128 4.128 21 C -0.164 4.164 22 C -0.172 4.172 23 C -0.186 4.186 24 H 0.089 0.911 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.156 0.844 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.405 2.490 15.404 16.214 hybrid contribution 1.304 0.104 -0.774 1.520 sum -3.100 2.594 14.630 15.178 Atomic orbital electron populations 1.21727 0.94289 1.01884 1.01236 1.21602 0.96181 0.95220 0.88852 0.94473 1.60601 1.33593 1.33441 1.04154 1.20469 0.99137 0.91877 0.88051 1.19350 0.92649 1.08122 0.99827 1.20638 0.98202 0.96444 0.93910 1.21197 0.94828 1.08913 1.01380 1.17950 0.91702 0.90362 0.92137 1.19825 1.05467 1.16646 1.11621 0.90886 1.26734 0.96863 0.96105 0.98145 1.69876 1.17825 1.19335 1.38418 0.85217 0.77680 0.79006 0.77940 1.18720 1.18957 1.18344 1.21189 0.98803 1.04775 0.95884 1.20754 0.95017 0.99150 0.96787 1.22707 0.95909 1.00004 0.94136 1.22883 0.97887 0.99495 0.96101 1.22779 0.97437 1.01617 0.95414 1.22966 0.96161 1.01651 0.97811 0.91118 0.93752 0.92781 0.84379 0.95780 0.91243 0.87063 0.88776 0.90223 0.88567 0.87944 0.89141 0.90001 0.90437 0.89533 0.90957 0.91910 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.37 71.98 0.67 -2.25 16 2 C 0.09 2.15 2.34 44.92 0.11 2.25 16 3 H 0.04 0.90 7.71 -2.38 -0.02 0.88 16 4 N -0.69 -20.76 6.30 -495.59 -3.12 -23.89 16 5 C 0.13 4.52 5.60 85.56 0.48 4.99 16 6 C -0.20 -8.49 5.42 -19.67 -0.11 -8.60 16 7 C -0.07 -3.32 9.67 22.22 0.21 -3.11 16 8 C -0.24 -12.46 9.80 22.73 0.22 -12.24 16 9 C 0.08 4.52 5.55 -21.29 -0.12 4.40 16 10 C -0.51 -28.26 9.05 23.46 0.21 -28.05 16 11 H 0.07 3.95 7.90 -2.91 -0.02 3.93 16 12 C 0.04 1.86 5.13 85.26 0.44 2.30 16 13 N -0.83 -44.43 11.06 21.83 0.24 -44.19 16 14 Si 0.98 39.13 29.59 68.60 2.03 41.16 16 15 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 16 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 17 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 18 C -0.19 -10.09 8.69 22.73 0.20 -9.89 16 19 C -0.10 -4.59 9.67 22.22 0.21 -4.38 16 20 C -0.11 -2.18 3.21 -10.27 -0.03 -2.21 16 21 C -0.13 -1.98 7.55 31.12 0.23 -1.75 16 22 C -0.14 -2.12 8.08 31.12 0.25 -1.87 16 23 C -0.15 -2.95 6.76 31.12 0.21 -2.73 16 24 H 0.07 1.24 8.13 -2.38 -0.02 1.22 16 25 H 0.04 1.05 7.37 -2.39 -0.02 1.03 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.34 10.54 7.59 -89.69 -0.68 9.86 16 28 H 0.02 0.79 8.00 -2.39 -0.02 0.77 16 29 H 0.07 2.26 7.31 -2.38 -0.02 2.24 16 30 H 0.11 4.44 8.06 -2.91 -0.02 4.41 16 31 H 0.09 4.59 8.06 -2.91 -0.02 4.57 16 32 H 0.29 13.88 8.30 -92.71 -0.77 13.12 16 33 H 0.10 5.43 6.28 -2.91 -0.02 5.41 16 34 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.08 1.26 8.04 -2.39 -0.02 1.24 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 Total: -1.00 -58.75 331.89 2.66 -56.09 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.31 Total: 33.96 kcal Atomic # 6 Polarization: -66.33 SS G_CDS: 3.20 Total: -63.13 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -2.88 Total: -68.08 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -58.75 2.66 -56.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399001535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.706 kcal (2) G-P(sol) polarization free energy of solvation -58.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds