Wall clock time and date at job start Mon Mar 30 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 112.90432 * 2 1 4 4 C 1.53779 * 113.61780 * 228.75283 * 2 1 3 5 5 C 1.53776 * 87.07932 * 220.01860 * 4 2 1 6 6 H 1.09006 * 113.61511 * 140.06372 * 5 4 2 7 7 N 1.46904 * 113.61211 * 270.88047 * 5 4 2 8 8 C 1.46902 * 110.99865 * 255.49493 * 7 5 4 9 9 C 1.50703 * 109.47070 * 179.97438 * 8 7 5 10 10 C 1.38634 * 119.74634 * 89.99879 * 9 8 7 11 11 C 1.37623 * 120.24787 * 180.02562 * 10 9 8 12 12 C 1.40718 * 119.74141 * 0.02562 * 11 10 9 13 13 C 1.41394 * 120.24147 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00340 * 150.20229 * 13 12 11 15 15 C 1.39951 * 120.00040 * 330.19825 * 13 12 11 16 16 N 1.30828 * 119.99766 * 161.73371 * 15 13 12 17 17 Si 1.86795 * 120.00090 * 341.73781 * 15 13 12 18 18 H 1.48497 * 109.47156 * 95.40669 * 17 15 13 19 19 H 1.48496 * 109.47283 * 215.40946 * 17 15 13 20 20 H 1.48505 * 109.47026 * 335.41112 * 17 15 13 21 21 C 1.40712 * 119.51283 * 359.97438 * 12 11 10 22 22 C 1.37610 * 119.74750 * 0.02562 * 21 12 11 23 23 C 1.53775 * 113.61557 * 131.24884 * 2 1 3 24 24 H 1.09000 * 113.61867 * 254.53323 * 23 2 1 25 25 C 1.53008 * 113.61398 * 25.43751 * 23 2 1 26 26 H 1.09001 * 109.46912 * 171.73918 * 1 2 3 27 27 H 1.08998 * 109.47578 * 291.74576 * 1 2 3 28 28 H 1.09004 * 109.47148 * 51.74627 * 1 2 3 29 29 H 1.08992 * 113.61517 * 105.46595 * 4 2 1 30 30 H 1.09009 * 113.68644 * 334.57724 * 4 2 1 31 31 H 1.00895 * 111.00211 * 19.45021 * 7 5 4 32 32 H 1.09001 * 109.47026 * 60.00230 * 8 7 5 33 33 H 1.08996 * 109.47092 * 300.00047 * 8 7 5 34 34 H 1.07994 * 119.87717 * 359.72632 * 10 9 8 35 35 H 1.07992 * 120.12949 * 180.02562 * 11 10 9 36 36 H 0.96993 * 119.99612 * 179.97438 * 16 15 13 37 37 H 1.08007 * 120.12619 * 180.02562 * 21 12 11 38 38 H 1.08004 * 119.88191 * 179.97438 * 22 21 12 39 39 H 1.08991 * 109.46887 * 157.49320 * 25 23 2 40 40 H 1.08998 * 109.46916 * 277.50034 * 25 23 2 41 41 H 1.09001 * 109.46723 * 37.49690 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9542 1.0041 0.0000 4 6 2.1461 -0.9290 -1.0594 5 6 3.1923 -1.3135 0.0000 6 1 3.4455 -2.3737 -0.0010 7 7 4.3766 -0.4442 0.0000 8 6 5.5257 -1.1201 -0.6172 9 6 6.7187 -0.1995 -0.5996 10 6 7.5841 -0.2156 0.4834 11 6 8.6765 0.6210 0.5104 12 6 8.9130 1.4953 -0.5666 13 6 10.0324 2.3590 -0.5501 14 1 10.4987 2.6565 -1.4777 15 6 10.5361 2.8284 0.6683 16 7 11.7480 3.3174 0.7302 17 14 9.4783 2.7566 2.2062 18 1 9.7942 1.5212 2.9671 19 1 9.7553 3.9443 3.0535 20 1 8.0442 2.7473 1.8205 21 6 8.0280 1.5029 -1.6605 22 6 6.9420 0.6577 -1.6661 23 6 2.1460 -0.9290 1.0593 24 1 2.5650 -0.3988 1.9146 25 6 1.2315 -2.0864 1.4658 26 1 -0.3633 -1.0170 -0.1477 27 1 -0.3634 0.3807 0.9545 28 1 -0.3633 0.6363 -0.8070 29 1 2.5650 -0.3987 -1.9145 30 1 1.4955 -1.7539 -1.3501 31 1 4.1821 0.4319 -0.4609 32 1 5.2835 -1.3807 -1.6475 33 1 5.7574 -2.0265 -0.0579 34 1 7.3976 -0.8837 1.3111 35 1 9.3495 0.6066 1.3548 36 1 12.0970 3.6431 1.5745 37 1 8.2003 2.1696 -2.4925 38 1 6.2611 0.6620 -2.5044 39 1 1.8323 -2.8956 1.8807 40 1 0.5197 -1.7409 2.2155 41 1 0.6911 -2.4470 0.5906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399238595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:18 Heat of formation + Delta-G solvation = 21.354573 kcal Electronic energy + Delta-G solvation = -18797.880435 eV Core-core repulsion = 16063.014862 eV Total energy + Delta-G solvation = -2734.865573 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.96127 -37.91315 -34.72201 -33.29200 -30.75634 -29.70718 -29.67528 -28.60787 -25.99827 -23.86642 -22.90549 -22.16028 -21.41201 -19.98296 -18.04703 -17.40217 -16.07245 -15.78082 -15.35125 -14.67519 -14.33918 -13.94165 -13.88094 -13.69511 -13.20890 -12.85390 -12.66941 -12.41620 -12.31325 -12.28198 -12.09400 -11.93133 -11.81367 -11.20904 -11.10278 -10.81476 -10.75289 -10.49447 -10.22075 -10.01811 -9.98074 -9.70414 -9.51769 -9.10985 -8.09583 -7.68251 -7.49489 -6.93433 -4.46463 2.57163 2.72367 3.14527 3.24821 3.36698 4.01956 4.22362 4.48012 4.54707 4.65371 4.78283 5.00238 5.28706 5.37826 5.43256 5.44456 5.54135 5.57769 5.66074 5.73270 5.78719 5.84188 5.86814 5.88304 5.92990 6.10208 6.15727 6.17458 6.22119 6.37544 6.44153 6.59143 6.87226 6.92305 7.20308 7.36296 7.45676 7.59456 7.69674 7.86156 7.91696 8.15362 8.37777 8.68393 8.82695 10.09011 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.031853 B = 0.004182 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.823691 B = 6693.604676 C = 6986.069762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.167 4.167 5 C 0.071 3.929 6 H 0.078 0.922 7 N -0.666 5.666 8 C 0.126 3.874 9 C -0.217 4.217 10 C -0.053 4.053 11 C -0.240 4.240 12 C 0.096 3.904 13 C -0.450 4.450 14 H 0.089 0.911 15 C 0.084 3.916 16 N -0.810 5.810 17 Si 0.912 3.088 18 H -0.271 1.271 19 H -0.292 1.292 20 H -0.243 1.243 21 C -0.211 4.211 22 C -0.075 4.075 23 C -0.106 4.106 24 H 0.082 0.918 25 C -0.131 4.131 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.342 0.658 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.285 0.715 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.653 -7.392 0.350 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 H 0.107 0.893 4 C -0.207 4.207 5 C -0.041 4.041 6 H 0.096 0.904 7 N -0.296 5.296 8 C -0.002 4.002 9 C -0.218 4.218 10 C -0.072 4.072 11 C -0.259 4.259 12 C 0.093 3.907 13 C -0.478 4.478 14 H 0.107 0.893 15 C -0.134 4.134 16 N -0.434 5.434 17 Si 0.739 3.261 18 H -0.197 1.197 19 H -0.220 1.220 20 H -0.166 1.166 21 C -0.230 4.230 22 C -0.094 4.094 23 C -0.125 4.125 24 H 0.100 0.900 25 C -0.188 4.188 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.161 0.839 32 H 0.040 0.960 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.203 -7.425 1.080 18.768 hybrid contribution -0.461 0.170 -0.242 0.548 sum -17.664 -7.255 0.839 19.114 Atomic orbital electron populations 1.21734 0.95313 1.01495 1.01290 1.22503 0.95120 0.98462 0.96724 0.89344 1.23730 0.99760 0.99789 0.97379 1.22680 0.89326 0.96977 0.95071 0.90370 1.60468 1.03368 1.06178 1.59607 1.20575 0.88457 0.95675 0.95496 1.18933 0.99450 1.05472 0.97974 1.20424 0.93805 0.97174 0.95756 1.21029 1.01309 1.02049 1.01537 1.17737 0.91096 0.90745 0.91156 1.19514 1.09069 1.24346 0.94874 0.89266 1.26164 0.94242 0.92188 1.00838 1.69703 1.14324 1.30426 1.28969 0.86297 0.83012 0.77000 0.79807 1.19695 1.21958 1.16600 1.20974 0.97188 1.03717 1.01158 1.20481 0.96951 0.95655 0.96309 1.22549 0.95724 0.96605 0.97625 0.90002 1.21567 0.98913 0.97427 1.00911 0.92566 0.92751 0.93106 0.91890 0.90214 0.83896 0.96034 0.91795 0.88888 0.88328 0.90494 0.88349 0.89316 0.92575 0.92571 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.95 37.16 0.33 -0.90 16 2 C -0.11 -1.14 4.04 -89.81 -0.36 -1.50 16 3 H 0.09 1.00 8.01 -51.93 -0.42 0.59 16 4 C -0.17 -1.77 6.81 -25.92 -0.18 -1.95 16 5 C 0.07 0.86 3.84 -66.90 -0.26 0.61 16 6 H 0.08 0.95 7.85 -51.93 -0.41 0.54 16 7 N -0.67 -10.04 6.55 -107.13 -0.70 -10.74 16 8 C 0.13 2.06 5.66 -4.97 -0.03 2.03 16 9 C -0.22 -4.38 5.41 -104.33 -0.56 -4.94 16 10 C -0.05 -1.16 9.67 -39.66 -0.38 -1.54 16 11 C -0.24 -5.88 7.18 -38.87 -0.28 -6.16 16 12 C 0.10 2.46 5.10 -106.83 -0.55 1.91 16 13 C -0.45 -12.33 9.57 -37.74 -0.36 -12.69 16 14 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 15 C 0.08 2.25 5.40 -17.34 -0.09 2.15 16 16 N -0.81 -21.88 13.93 55.55 0.77 -21.10 16 17 Si 0.91 21.31 24.52 -169.99 -4.17 17.14 16 18 H -0.27 -6.16 6.71 56.52 0.38 -5.78 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.24 -5.87 6.86 56.52 0.39 -5.48 16 21 C -0.21 -4.93 9.80 -38.88 -0.38 -5.31 16 22 C -0.08 -1.56 9.67 -39.66 -0.38 -1.94 16 23 C -0.11 -1.17 4.27 -89.81 -0.38 -1.55 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 25 C -0.13 -1.18 8.55 37.16 0.32 -0.86 16 26 H 0.06 0.45 6.42 -51.93 -0.33 0.12 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.08 0.76 7.52 -51.92 -0.39 0.37 16 31 H 0.34 5.19 8.06 -39.29 -0.32 4.87 16 32 H 0.02 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 34 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.10 2.43 4.73 -52.49 -0.25 2.18 16 36 H 0.28 6.96 8.30 -40.82 -0.34 6.63 16 37 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 38 H 0.09 1.60 8.06 -52.48 -0.42 1.18 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.46 6.07 -51.93 -0.32 0.14 16 LS Contribution 323.77 15.07 4.88 4.88 Total: -1.00 -26.95 323.77 -9.43 -36.38 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.66 Total: 6.09 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: -3.55 Total: -32.65 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.07 Total: -31.84 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.17 Total: 17.14 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.95 -9.43 -36.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399238595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.737 kcal (2) G-P(sol) polarization free energy of solvation -26.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds