Wall clock time and date at job start Mon Mar 30 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 112.90432 * 2 1 4 4 C 1.53779 * 113.61780 * 228.75283 * 2 1 3 5 5 C 1.53776 * 87.07932 * 220.01860 * 4 2 1 6 6 H 1.09006 * 113.61511 * 140.06372 * 5 4 2 7 7 N 1.46904 * 113.61211 * 270.88047 * 5 4 2 8 8 C 1.46902 * 110.99865 * 255.49493 * 7 5 4 9 9 C 1.50703 * 109.47070 * 179.97438 * 8 7 5 10 10 C 1.38634 * 119.74634 * 89.99879 * 9 8 7 11 11 C 1.37623 * 120.24787 * 180.02562 * 10 9 8 12 12 C 1.40718 * 119.74141 * 0.02562 * 11 10 9 13 13 C 1.41394 * 120.24147 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00340 * 150.20229 * 13 12 11 15 15 C 1.39951 * 120.00040 * 330.19825 * 13 12 11 16 16 N 1.30828 * 119.99766 * 161.73371 * 15 13 12 17 17 Si 1.86795 * 120.00090 * 341.73781 * 15 13 12 18 18 H 1.48497 * 109.47156 * 95.40669 * 17 15 13 19 19 H 1.48496 * 109.47283 * 215.40946 * 17 15 13 20 20 H 1.48505 * 109.47026 * 335.41112 * 17 15 13 21 21 C 1.40712 * 119.51283 * 359.97438 * 12 11 10 22 22 C 1.37610 * 119.74750 * 0.02562 * 21 12 11 23 23 C 1.53775 * 113.61557 * 131.24884 * 2 1 3 24 24 H 1.09000 * 113.61867 * 254.53323 * 23 2 1 25 25 C 1.53008 * 113.61398 * 25.43751 * 23 2 1 26 26 H 1.09001 * 109.46912 * 171.73918 * 1 2 3 27 27 H 1.08998 * 109.47578 * 291.74576 * 1 2 3 28 28 H 1.09004 * 109.47148 * 51.74627 * 1 2 3 29 29 H 1.08992 * 113.61517 * 105.46595 * 4 2 1 30 30 H 1.09009 * 113.68644 * 334.57724 * 4 2 1 31 31 H 1.00895 * 111.00211 * 19.45021 * 7 5 4 32 32 H 1.09001 * 109.47026 * 60.00230 * 8 7 5 33 33 H 1.08996 * 109.47092 * 300.00047 * 8 7 5 34 34 H 1.07994 * 119.87717 * 359.72632 * 10 9 8 35 35 H 1.07992 * 120.12949 * 180.02562 * 11 10 9 36 36 H 0.96993 * 119.99612 * 179.97438 * 16 15 13 37 37 H 1.08007 * 120.12619 * 180.02562 * 21 12 11 38 38 H 1.08004 * 119.88191 * 179.97438 * 22 21 12 39 39 H 1.08991 * 109.46887 * 157.49320 * 25 23 2 40 40 H 1.08998 * 109.46916 * 277.50034 * 25 23 2 41 41 H 1.09001 * 109.46723 * 37.49690 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9542 1.0041 0.0000 4 6 2.1461 -0.9290 -1.0594 5 6 3.1923 -1.3135 0.0000 6 1 3.4455 -2.3737 -0.0010 7 7 4.3766 -0.4442 0.0000 8 6 5.5257 -1.1201 -0.6172 9 6 6.7187 -0.1995 -0.5996 10 6 7.5841 -0.2156 0.4834 11 6 8.6765 0.6210 0.5104 12 6 8.9130 1.4953 -0.5666 13 6 10.0324 2.3590 -0.5501 14 1 10.4987 2.6565 -1.4777 15 6 10.5361 2.8284 0.6683 16 7 11.7480 3.3174 0.7302 17 14 9.4783 2.7566 2.2062 18 1 9.7942 1.5212 2.9671 19 1 9.7553 3.9443 3.0535 20 1 8.0442 2.7473 1.8205 21 6 8.0280 1.5029 -1.6605 22 6 6.9420 0.6577 -1.6661 23 6 2.1460 -0.9290 1.0593 24 1 2.5650 -0.3988 1.9146 25 6 1.2315 -2.0864 1.4658 26 1 -0.3633 -1.0170 -0.1477 27 1 -0.3634 0.3807 0.9545 28 1 -0.3633 0.6363 -0.8070 29 1 2.5650 -0.3987 -1.9145 30 1 1.4955 -1.7539 -1.3501 31 1 4.1821 0.4319 -0.4609 32 1 5.2835 -1.3807 -1.6475 33 1 5.7574 -2.0265 -0.0579 34 1 7.3976 -0.8837 1.3111 35 1 9.3495 0.6066 1.3548 36 1 12.0970 3.6431 1.5745 37 1 8.2003 2.1696 -2.4925 38 1 6.2611 0.6620 -2.5044 39 1 1.8323 -2.8956 1.8807 40 1 0.5197 -1.7409 2.2155 41 1 0.6911 -2.4470 0.5906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399238595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:18 Heat of formation + Delta-G solvation = 6.719563 kcal Electronic energy + Delta-G solvation = -18798.515057 eV Core-core repulsion = 16063.014862 eV Total energy + Delta-G solvation = -2735.500194 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87384 -39.66355 -36.22912 -34.99120 -32.34922 -31.48582 -30.45848 -29.68865 -27.54833 -24.89286 -24.28828 -23.31531 -22.98566 -21.73693 -19.35449 -18.92603 -17.51366 -16.93246 -16.73619 -15.88701 -15.80207 -15.56340 -15.25050 -14.95325 -14.59865 -14.28887 -14.07932 -13.73168 -13.68941 -13.26767 -13.09917 -13.00694 -12.84630 -12.73958 -12.63686 -12.41317 -12.09839 -11.94843 -11.67987 -11.43741 -11.34371 -10.99539 -10.84542 -10.76494 -9.49074 -9.42829 -9.14163 -8.90858 -6.49551 0.75954 0.88997 1.25695 1.39183 1.48420 2.12023 2.55518 3.24598 3.58929 3.66104 3.77395 3.94148 4.07012 4.21420 4.29041 4.44545 4.51994 4.60460 4.65235 4.67476 4.73891 4.76041 4.82099 4.89075 4.89860 5.04244 5.06529 5.09801 5.13671 5.16108 5.23096 5.33768 5.36614 5.56713 5.62460 5.63454 5.76858 5.91660 6.07267 6.25491 6.29474 6.42944 6.53888 6.75182 6.85025 8.18055 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.031853 B = 0.004182 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.823691 B = 6693.604676 C = 6986.069762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 H 0.075 0.925 4 C -0.157 4.157 5 C 0.064 3.936 6 H 0.083 0.917 7 N -0.678 5.678 8 C 0.131 3.869 9 C -0.192 4.192 10 C -0.063 4.063 11 C -0.251 4.251 12 C 0.073 3.927 13 C -0.489 4.489 14 H 0.055 0.945 15 C 0.049 3.951 16 N -0.852 5.852 17 Si 0.966 3.034 18 H -0.260 1.260 19 H -0.277 1.277 20 H -0.256 1.256 21 C -0.223 4.223 22 C -0.073 4.073 23 C -0.104 4.104 24 H 0.061 0.939 25 C -0.127 4.127 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.340 0.660 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.293 0.707 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.083 -9.382 0.679 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.093 0.907 4 C -0.196 4.196 5 C -0.046 4.046 6 H 0.101 0.899 7 N -0.308 5.308 8 C 0.003 3.997 9 C -0.193 4.193 10 C -0.082 4.082 11 C -0.270 4.270 12 C 0.070 3.930 13 C -0.519 4.519 14 H 0.074 0.926 15 C -0.165 4.165 16 N -0.479 5.479 17 Si 0.790 3.210 18 H -0.186 1.186 19 H -0.204 1.204 20 H -0.180 1.180 21 C -0.242 4.242 22 C -0.091 4.091 23 C -0.123 4.123 24 H 0.080 0.920 25 C -0.184 4.184 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.159 0.841 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.134 0.866 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.142 0.858 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.640 -9.423 1.407 22.732 hybrid contribution 0.398 0.636 -0.460 0.880 sum -20.242 -8.787 0.947 22.087 Atomic orbital electron populations 1.21710 0.93900 1.02296 1.01589 1.22472 0.96299 0.97669 0.96381 0.90711 1.23669 0.99176 1.00107 0.96678 1.22751 0.88726 0.96591 0.96544 0.89907 1.60378 1.04235 1.06595 1.59553 1.20519 0.87342 0.94856 0.96973 1.19474 0.99595 1.03974 0.96307 1.20755 0.93253 0.96980 0.97178 1.21126 1.02267 1.02546 1.01098 1.17878 0.91321 0.91066 0.92690 1.19499 1.11157 1.27050 0.94209 0.92642 1.26775 0.95047 0.91762 1.02914 1.69727 1.15462 1.32536 1.30137 0.85477 0.80504 0.77876 0.77137 1.18584 1.20378 1.18002 1.21193 0.97799 1.04531 1.00679 1.20834 0.96254 0.94484 0.97544 1.22558 0.95731 0.97327 0.96719 0.92032 1.21549 0.98687 0.96541 1.01628 0.91490 0.92580 0.92757 0.92338 0.88570 0.84079 0.94310 0.90843 0.86564 0.88933 0.89654 0.88165 0.85805 0.92510 0.91832 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.95 71.98 0.64 -1.34 16 2 C -0.11 -1.98 4.04 -10.27 -0.04 -2.03 16 3 H 0.07 1.56 8.01 -2.39 -0.02 1.54 16 4 C -0.16 -2.78 6.81 31.12 0.21 -2.56 16 5 C 0.06 1.36 3.84 45.44 0.17 1.53 16 6 H 0.08 1.69 7.85 -2.38 -0.02 1.67 16 7 N -0.68 -18.24 6.55 -492.84 -3.23 -21.47 16 8 C 0.13 3.77 5.66 85.56 0.48 4.25 16 9 C -0.19 -7.17 5.41 -19.67 -0.11 -7.28 16 10 C -0.06 -2.63 9.67 22.22 0.21 -2.42 16 11 C -0.25 -12.21 7.18 22.73 0.16 -12.05 16 12 C 0.07 3.82 5.10 -21.29 -0.11 3.71 16 13 C -0.49 -28.30 9.57 23.46 0.22 -28.07 16 14 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 15 C 0.05 2.72 5.40 85.26 0.46 3.18 16 16 N -0.85 -48.02 13.93 21.83 0.30 -47.72 16 17 Si 0.97 44.66 24.52 68.60 1.68 46.34 16 18 H -0.26 -11.44 6.71 99.48 0.67 -10.78 16 19 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.26 -12.22 6.86 99.48 0.68 -11.54 16 21 C -0.22 -10.37 9.80 22.73 0.22 -10.15 16 22 C -0.07 -2.83 9.67 22.22 0.21 -2.61 16 23 C -0.10 -2.02 4.27 -10.27 -0.04 -2.06 16 24 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 25 C -0.13 -1.87 8.55 71.98 0.62 -1.25 16 26 H 0.07 0.82 6.42 -2.39 -0.02 0.81 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 30 H 0.10 1.41 7.52 -2.38 -0.02 1.40 16 31 H 0.34 9.33 8.06 -89.70 -0.72 8.61 16 32 H 0.04 1.01 8.08 -2.39 -0.02 0.99 16 33 H 0.07 2.02 8.07 -2.39 -0.02 2.01 16 34 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 35 H 0.09 4.55 4.73 -2.91 -0.01 4.54 16 36 H 0.29 14.83 8.30 -92.71 -0.77 14.06 16 37 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 38 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 0.84 6.07 -2.39 -0.01 0.83 16 Total: -1.00 -59.63 323.77 2.30 -57.33 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.22 Total: 24.66 kcal Atomic # 6 Polarization: -62.48 SS G_CDS: 3.33 Total: -59.15 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -2.93 Total: -69.18 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.68 Total: 46.34 kcal Total: -59.63 2.30 -57.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399238595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.050 kcal (2) G-P(sol) polarization free energy of solvation -59.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds