Wall clock time and date at job start Mon Mar 30 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 112.90639 * 2 1 4 4 C 1.53781 * 113.61888 * 228.75025 * 2 1 3 5 5 C 1.53780 * 87.08084 * 220.01927 * 4 2 1 6 6 H 1.09007 * 113.60913 * 270.87952 * 5 4 2 7 7 N 1.46903 * 113.61653 * 140.06547 * 5 4 2 8 8 C 1.46900 * 111.00044 * 104.49922 * 7 5 4 9 9 C 1.50699 * 109.46930 * 179.97438 * 8 7 5 10 10 C 1.38636 * 119.74945 * 269.72496 * 9 8 7 11 11 C 1.37617 * 120.24642 * 179.76202 * 10 9 8 12 12 C 1.40717 * 119.74542 * 0.48985 * 11 10 9 13 13 C 1.41396 * 120.24478 * 179.78386 * 12 11 10 14 14 H 1.08000 * 120.00168 * 24.37187 * 13 12 11 15 15 C 1.39947 * 120.00409 * 204.36949 * 13 12 11 16 16 N 1.30829 * 119.99520 * 17.85463 * 15 13 12 17 17 Si 1.86796 * 120.00088 * 197.86259 * 15 13 12 18 18 H 1.48500 * 109.47545 * 89.99772 * 17 15 13 19 19 H 1.48506 * 109.46783 * 209.99520 * 17 15 13 20 20 H 1.48497 * 109.47230 * 329.99338 * 17 15 13 21 21 C 1.40712 * 119.51221 * 359.76613 * 12 11 10 22 22 C 1.37621 * 119.74514 * 359.97438 * 21 12 11 23 23 C 1.53774 * 87.08307 * 25.42765 * 5 4 2 24 24 H 1.09001 * 113.61284 * 89.12216 * 23 5 4 25 25 C 1.52995 * 113.61646 * 220.01788 * 23 5 4 26 26 H 1.09007 * 109.46828 * 171.74661 * 1 2 3 27 27 H 1.08995 * 109.47673 * 291.74638 * 1 2 3 28 28 H 1.09003 * 109.47354 * 51.75151 * 1 2 3 29 29 H 1.09002 * 113.61153 * 334.56548 * 4 2 1 30 30 H 1.08998 * 113.61850 * 105.38440 * 4 2 1 31 31 H 1.00897 * 111.00169 * 228.45781 * 7 5 4 32 32 H 1.08994 * 109.47180 * 299.99953 * 8 7 5 33 33 H 1.09005 * 109.46957 * 60.00244 * 8 7 5 34 34 H 1.07999 * 119.87291 * 0.02562 * 10 9 8 35 35 H 1.08005 * 120.13123 * 180.27891 * 11 10 9 36 36 H 0.97000 * 119.99672 * 180.02562 * 16 15 13 37 37 H 1.07996 * 120.12748 * 180.02562 * 21 12 11 38 38 H 1.08003 * 119.87729 * 179.97438 * 22 21 12 39 39 H 1.09003 * 109.47435 * 176.99949 * 25 23 5 40 40 H 1.08999 * 109.47646 * 297.00953 * 25 23 5 41 41 H 1.09001 * 109.47047 * 57.00768 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9542 1.0041 0.0000 4 6 2.1461 -0.9290 -1.0593 5 6 3.1923 -1.3135 0.0001 6 1 4.0711 -0.6685 0.0000 7 7 3.5335 -2.7424 -0.0012 8 6 4.8472 -2.9694 -0.6182 9 6 5.1624 -4.4429 -0.6008 10 6 5.8379 -4.9893 0.4796 11 6 6.1266 -6.3345 0.5083 12 6 5.7427 -7.1541 -0.5691 13 6 6.0381 -8.5368 -0.5527 14 1 6.1862 -9.0462 0.3880 15 6 6.1384 -9.2453 -1.7554 16 7 6.3093 -8.6016 -2.8814 17 14 6.0282 -11.1100 -1.7529 18 1 4.6110 -11.5224 -1.9162 19 1 6.8346 -11.6550 -2.8745 20 1 6.5514 -11.6351 -0.4662 21 6 5.0623 -6.5877 -1.6629 22 6 4.7792 -5.2409 -1.6678 23 6 2.1460 -0.9290 1.0593 24 1 1.4946 -1.7535 1.3490 25 6 2.7341 -0.1847 2.2598 26 1 -0.3633 -1.0171 -0.1475 27 1 -0.3634 0.3807 0.9544 28 1 -0.3634 0.6362 -0.8071 29 1 1.4946 -1.7535 -1.3490 30 1 2.5638 -0.3989 -1.9152 31 1 3.5022 -3.1225 0.9329 32 1 4.8314 -2.6129 -1.6481 33 1 5.6100 -2.4284 -0.0581 34 1 6.1348 -4.3575 1.3036 35 1 6.6490 -6.7589 1.3530 36 1 6.3785 -9.0926 -3.7151 37 1 4.7626 -7.2076 -2.4948 38 1 4.2575 -4.8039 -2.5063 39 1 1.9311 0.1008 2.9393 40 1 3.4376 -0.8341 2.7809 41 1 3.2527 0.7096 1.9143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399238597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:24 Heat of formation + Delta-G solvation = 16.110977 kcal Electronic energy + Delta-G solvation = -18572.774182 eV Core-core repulsion = 15837.681230 eV Total energy + Delta-G solvation = -2735.092952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.57153 -37.60395 -34.66885 -33.21232 -30.51136 -30.01356 -29.22837 -28.41598 -26.08508 -23.43069 -22.62113 -21.37139 -20.90166 -19.93987 -19.25295 -17.26243 -15.69269 -15.30310 -14.97012 -14.65683 -14.18653 -13.84980 -13.72395 -13.45862 -13.12310 -13.06116 -12.68670 -12.48463 -12.13652 -11.90957 -11.64345 -11.59654 -11.45008 -11.11258 -11.05842 -10.84055 -10.75145 -10.48500 -10.39857 -10.03938 -9.94825 -9.51072 -9.32263 -9.10692 -7.99124 -7.40236 -7.27028 -6.73393 -4.31969 2.77554 3.08453 3.11618 3.12264 3.21220 3.95148 4.47191 4.51204 4.57254 4.71696 4.92119 5.08479 5.35657 5.37727 5.43742 5.50662 5.69527 5.72947 5.74771 5.79440 5.87832 5.91328 5.96915 6.01650 6.10112 6.13294 6.28809 6.40619 6.44924 6.52177 6.56288 6.99587 7.10350 7.33741 7.39931 7.53787 7.65220 7.78337 7.94341 8.09343 8.19578 8.33825 8.68379 8.92930 9.01715 10.21204 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.039110 B = 0.003539 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.759882 B = 7910.251434 C = 8144.762168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 H 0.084 0.916 4 C -0.123 4.123 5 C 0.061 3.939 6 H 0.064 0.936 7 N -0.671 5.671 8 C 0.124 3.876 9 C -0.212 4.212 10 C -0.086 4.086 11 C -0.228 4.228 12 C 0.112 3.888 13 C -0.464 4.464 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.793 5.793 17 Si 0.908 3.092 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.167 4.167 22 C -0.079 4.079 23 C -0.112 4.112 24 H 0.095 0.905 25 C -0.143 4.143 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.339 0.661 32 H 0.061 0.939 33 H 0.017 0.983 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.280 0.720 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.078 12.671 4.072 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.102 0.898 4 C -0.161 4.161 5 C -0.049 4.049 6 H 0.081 0.919 7 N -0.302 5.302 8 C -0.003 4.003 9 C -0.214 4.214 10 C -0.105 4.105 11 C -0.247 4.247 12 C 0.110 3.890 13 C -0.494 4.494 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.419 5.419 17 Si 0.732 3.268 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.187 1.187 21 C -0.187 4.187 22 C -0.098 4.098 23 C -0.131 4.131 24 H 0.114 0.886 25 C -0.200 4.200 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.158 0.842 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.362 12.499 3.237 14.862 hybrid contribution 0.688 -0.521 0.576 1.038 sum -6.674 11.978 3.813 14.232 Atomic orbital electron populations 1.21685 0.94944 1.01877 1.01106 1.22466 0.95456 0.97953 0.97253 0.89784 1.23098 0.98199 0.98619 0.96194 1.23063 0.95512 0.89904 0.96422 0.91857 1.60779 1.31432 1.12307 1.25695 1.20589 0.87452 0.94259 0.98046 1.18920 1.10846 0.93509 0.98111 1.20351 0.99109 0.94863 0.96161 1.20923 1.09127 0.93202 1.01465 1.17620 0.87883 0.92834 0.90697 1.19601 1.42754 0.93754 0.93278 0.90527 1.25907 0.92171 1.01028 0.95053 1.69837 1.34317 1.38225 0.99475 0.86327 0.79198 0.82388 0.78874 1.19272 1.20363 1.18665 1.21316 1.02676 0.93800 1.00882 1.20500 0.98800 0.94180 0.96305 1.22879 0.97909 0.98556 0.93723 0.88632 1.21745 1.00532 0.99958 0.97811 0.92421 0.92954 0.92934 0.89282 0.92281 0.84211 0.92082 0.96527 0.89992 0.89212 0.90925 0.86542 0.89509 0.92752 0.92692 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.68 37.15 0.36 -0.90 16 2 C -0.11 -1.14 3.91 -89.81 -0.35 -1.49 16 3 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 4 C -0.12 -1.49 7.43 -25.92 -0.19 -1.68 16 5 C 0.06 0.80 3.66 -66.90 -0.25 0.55 16 6 H 0.06 0.83 7.85 -51.93 -0.41 0.42 16 7 N -0.67 -10.74 6.54 -107.13 -0.70 -11.44 16 8 C 0.12 2.24 5.67 -4.98 -0.03 2.21 16 9 C -0.21 -4.66 5.41 -104.33 -0.56 -5.22 16 10 C -0.09 -1.93 9.67 -39.66 -0.38 -2.32 16 11 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 12 C 0.11 3.04 5.58 -106.83 -0.60 2.44 16 13 C -0.46 -12.50 9.05 -37.74 -0.34 -12.84 16 14 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 15 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 16 N -0.79 -20.76 10.95 55.55 0.61 -20.15 16 17 Si 0.91 18.87 29.60 -169.99 -5.03 13.84 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 19 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 21 C -0.17 -4.43 8.70 -38.87 -0.34 -4.77 16 22 C -0.08 -1.88 9.67 -39.66 -0.38 -2.27 16 23 C -0.11 -1.23 3.52 -89.82 -0.32 -1.55 16 24 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 25 C -0.14 -1.39 9.68 37.15 0.36 -1.03 16 26 H 0.06 0.56 8.01 -51.92 -0.42 0.14 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.09 1.19 8.01 -51.93 -0.42 0.77 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.34 5.43 8.57 -39.29 -0.34 5.09 16 32 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 33 H 0.02 0.29 8.06 -51.93 -0.42 -0.13 16 34 H 0.08 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 36 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 37 H 0.12 3.19 6.16 -52.49 -0.32 2.86 16 38 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.48 8.01 -51.93 -0.42 0.07 16 LS Contribution 334.93 15.07 5.05 5.05 Total: -1.00 -26.87 334.93 -10.49 -37.36 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.92 Total: 8.41 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: -3.49 Total: -33.06 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: -0.09 Total: -31.60 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.87 -10.49 -37.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399238597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.474 kcal (2) G-P(sol) polarization free energy of solvation -26.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds