Wall clock time and date at job start Mon Mar 30 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 112.90639 * 2 1 4 4 C 1.53781 * 113.61888 * 228.75025 * 2 1 3 5 5 C 1.53780 * 87.08084 * 220.01927 * 4 2 1 6 6 H 1.09007 * 113.60913 * 270.87952 * 5 4 2 7 7 N 1.46903 * 113.61653 * 140.06547 * 5 4 2 8 8 C 1.46900 * 111.00044 * 104.49922 * 7 5 4 9 9 C 1.50699 * 109.46930 * 179.97438 * 8 7 5 10 10 C 1.38636 * 119.74945 * 269.72496 * 9 8 7 11 11 C 1.37617 * 120.24642 * 179.76202 * 10 9 8 12 12 C 1.40717 * 119.74542 * 0.48985 * 11 10 9 13 13 C 1.41396 * 120.24478 * 179.78386 * 12 11 10 14 14 H 1.08000 * 120.00168 * 24.37187 * 13 12 11 15 15 C 1.39947 * 120.00409 * 204.36949 * 13 12 11 16 16 N 1.30829 * 119.99520 * 17.85463 * 15 13 12 17 17 Si 1.86796 * 120.00088 * 197.86259 * 15 13 12 18 18 H 1.48500 * 109.47545 * 89.99772 * 17 15 13 19 19 H 1.48506 * 109.46783 * 209.99520 * 17 15 13 20 20 H 1.48497 * 109.47230 * 329.99338 * 17 15 13 21 21 C 1.40712 * 119.51221 * 359.76613 * 12 11 10 22 22 C 1.37621 * 119.74514 * 359.97438 * 21 12 11 23 23 C 1.53774 * 87.08307 * 25.42765 * 5 4 2 24 24 H 1.09001 * 113.61284 * 89.12216 * 23 5 4 25 25 C 1.52995 * 113.61646 * 220.01788 * 23 5 4 26 26 H 1.09007 * 109.46828 * 171.74661 * 1 2 3 27 27 H 1.08995 * 109.47673 * 291.74638 * 1 2 3 28 28 H 1.09003 * 109.47354 * 51.75151 * 1 2 3 29 29 H 1.09002 * 113.61153 * 334.56548 * 4 2 1 30 30 H 1.08998 * 113.61850 * 105.38440 * 4 2 1 31 31 H 1.00897 * 111.00169 * 228.45781 * 7 5 4 32 32 H 1.08994 * 109.47180 * 299.99953 * 8 7 5 33 33 H 1.09005 * 109.46957 * 60.00244 * 8 7 5 34 34 H 1.07999 * 119.87291 * 0.02562 * 10 9 8 35 35 H 1.08005 * 120.13123 * 180.27891 * 11 10 9 36 36 H 0.97000 * 119.99672 * 180.02562 * 16 15 13 37 37 H 1.07996 * 120.12748 * 180.02562 * 21 12 11 38 38 H 1.08003 * 119.87729 * 179.97438 * 22 21 12 39 39 H 1.09003 * 109.47435 * 176.99949 * 25 23 5 40 40 H 1.08999 * 109.47646 * 297.00953 * 25 23 5 41 41 H 1.09001 * 109.47047 * 57.00768 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9542 1.0041 0.0000 4 6 2.1461 -0.9290 -1.0593 5 6 3.1923 -1.3135 0.0001 6 1 4.0711 -0.6685 0.0000 7 7 3.5335 -2.7424 -0.0012 8 6 4.8472 -2.9694 -0.6182 9 6 5.1624 -4.4429 -0.6008 10 6 5.8379 -4.9893 0.4796 11 6 6.1266 -6.3345 0.5083 12 6 5.7427 -7.1541 -0.5691 13 6 6.0381 -8.5368 -0.5527 14 1 6.1862 -9.0462 0.3880 15 6 6.1384 -9.2453 -1.7554 16 7 6.3093 -8.6016 -2.8814 17 14 6.0282 -11.1100 -1.7529 18 1 4.6110 -11.5224 -1.9162 19 1 6.8346 -11.6550 -2.8745 20 1 6.5514 -11.6351 -0.4662 21 6 5.0623 -6.5877 -1.6629 22 6 4.7792 -5.2409 -1.6678 23 6 2.1460 -0.9290 1.0593 24 1 1.4946 -1.7535 1.3490 25 6 2.7341 -0.1847 2.2598 26 1 -0.3633 -1.0171 -0.1475 27 1 -0.3634 0.3807 0.9544 28 1 -0.3634 0.6362 -0.8071 29 1 1.4946 -1.7535 -1.3490 30 1 2.5638 -0.3989 -1.9152 31 1 3.5022 -3.1225 0.9329 32 1 4.8314 -2.6129 -1.6481 33 1 5.6100 -2.4284 -0.0581 34 1 6.1348 -4.3575 1.3036 35 1 6.6490 -6.7589 1.3530 36 1 6.3785 -9.0926 -3.7151 37 1 4.7626 -7.2076 -2.4948 38 1 4.2575 -4.8039 -2.5063 39 1 1.9311 0.1008 2.9393 40 1 3.4376 -0.8341 2.7809 41 1 3.2527 0.7096 1.9143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399238597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:23 Heat of formation + Delta-G solvation = 3.117442 kcal Electronic energy + Delta-G solvation = -18573.337624 eV Core-core repulsion = 15837.681230 eV Total energy + Delta-G solvation = -2735.656394 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55080 -39.42746 -36.26858 -34.86740 -31.92154 -31.15250 -31.04383 -29.54651 -27.73218 -24.99185 -23.58564 -22.86442 -22.35799 -21.66179 -20.24868 -19.21130 -17.19376 -16.93432 -16.08083 -15.85056 -15.70230 -15.43205 -15.20004 -14.61541 -14.34975 -14.22442 -13.95165 -13.79631 -13.42796 -13.33158 -13.26167 -13.03581 -12.73825 -12.62838 -12.40326 -12.24266 -12.11938 -11.78192 -11.66065 -11.45474 -11.23939 -11.01478 -10.88415 -10.83054 -9.33752 -9.32561 -9.11079 -8.63032 -6.32505 0.95959 1.16204 1.37700 1.51106 1.51982 2.21026 2.70707 3.43846 3.64505 3.67421 3.81343 3.98257 4.07459 4.33208 4.36222 4.51751 4.55527 4.58840 4.64033 4.66938 4.68371 4.85225 4.93244 4.96177 4.99901 5.07757 5.09302 5.16557 5.17104 5.26936 5.33199 5.39639 5.47824 5.58887 5.65417 5.72469 5.96628 6.11593 6.23940 6.35559 6.40458 6.57717 6.72401 6.95403 7.05690 8.34119 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.039110 B = 0.003539 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.759882 B = 7910.251434 C = 8144.762168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.101 4.101 3 H 0.098 0.902 4 C -0.127 4.127 5 C 0.055 3.945 6 H 0.069 0.931 7 N -0.680 5.680 8 C 0.133 3.867 9 C -0.200 4.200 10 C -0.085 4.085 11 C -0.243 4.243 12 C 0.079 3.921 13 C -0.504 4.504 14 H 0.074 0.926 15 C 0.034 3.966 16 N -0.827 5.827 17 Si 0.983 3.017 18 H -0.263 1.263 19 H -0.267 1.267 20 H -0.258 1.258 21 C -0.191 4.191 22 C -0.087 4.087 23 C -0.106 4.106 24 H 0.086 0.914 25 C -0.140 4.140 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.339 0.661 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.287 0.713 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.586 14.157 4.862 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.119 4.119 3 H 0.116 0.884 4 C -0.166 4.166 5 C -0.054 4.054 6 H 0.087 0.913 7 N -0.311 5.311 8 C 0.005 3.995 9 C -0.201 4.201 10 C -0.103 4.103 11 C -0.263 4.263 12 C 0.077 3.923 13 C -0.533 4.533 14 H 0.092 0.908 15 C -0.180 4.180 16 N -0.453 5.453 17 Si 0.804 3.196 18 H -0.187 1.187 19 H -0.192 1.192 20 H -0.182 1.182 21 C -0.211 4.211 22 C -0.105 4.105 23 C -0.125 4.125 24 H 0.104 0.896 25 C -0.197 4.197 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.158 0.842 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.875 14.009 4.033 16.569 hybrid contribution 0.821 -0.816 0.346 1.208 sum -7.054 13.193 4.379 15.588 Atomic orbital electron populations 1.21673 0.94134 1.01595 1.02092 1.22433 0.96107 0.97963 0.95446 0.88409 1.23097 0.97960 0.98771 0.96725 1.23208 0.96201 0.87989 0.98027 0.91318 1.60693 1.29994 1.14667 1.25721 1.20461 0.88986 0.91314 0.98768 1.19352 1.08535 0.95545 0.96703 1.20678 0.98221 0.94281 0.97164 1.21149 1.09517 0.94337 1.01251 1.17963 0.88889 0.93674 0.91772 1.19846 1.44998 0.94466 0.94008 0.90790 1.26772 0.91096 1.05993 0.94181 1.69891 1.34855 1.40310 1.00205 0.85197 0.79370 0.75882 0.79199 1.18747 1.19175 1.18178 1.21269 1.04207 0.94889 1.00739 1.20719 0.98816 0.93531 0.97482 1.22818 0.96986 0.98594 0.94102 0.89569 1.21724 1.00813 0.99906 0.97286 0.93390 0.91857 0.92058 0.90873 0.91957 0.84242 0.91956 0.95035 0.86739 0.88628 0.90204 0.88454 0.88311 0.91596 0.93202 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.68 71.98 0.70 -1.49 16 2 C -0.10 -1.79 3.91 -10.27 -0.04 -1.83 16 3 H 0.10 1.51 8.01 -2.39 -0.02 1.49 16 4 C -0.13 -2.87 7.43 31.12 0.23 -2.64 16 5 C 0.06 1.33 3.66 45.44 0.17 1.49 16 6 H 0.07 1.61 7.85 -2.38 -0.02 1.59 16 7 N -0.68 -20.60 6.54 -492.86 -3.22 -23.82 16 8 C 0.13 4.52 5.67 85.56 0.48 5.00 16 9 C -0.20 -8.57 5.41 -19.67 -0.11 -8.68 16 10 C -0.08 -3.72 9.67 22.22 0.21 -3.51 16 11 C -0.24 -12.22 9.80 22.73 0.22 -12.00 16 12 C 0.08 4.43 5.58 -21.29 -0.12 4.31 16 13 C -0.50 -28.08 9.05 23.46 0.21 -27.87 16 14 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 15 C 0.03 1.77 5.14 85.26 0.44 2.21 16 16 N -0.83 -44.57 10.95 21.83 0.24 -44.33 16 17 Si 0.98 39.23 29.60 68.60 2.03 41.27 16 18 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 19 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 21 C -0.19 -10.49 8.70 22.73 0.20 -10.29 16 22 C -0.09 -4.18 9.67 22.22 0.21 -3.96 16 23 C -0.11 -2.09 3.52 -10.27 -0.04 -2.13 16 24 H 0.09 1.89 8.10 -2.39 -0.02 1.87 16 25 C -0.14 -2.32 9.68 71.98 0.70 -1.62 16 26 H 0.05 0.85 8.01 -2.38 -0.02 0.83 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 1.89 8.01 -2.39 -0.02 1.87 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.34 10.26 8.57 -89.70 -0.77 9.49 16 32 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 33 H 0.03 0.99 8.06 -2.38 -0.02 0.97 16 34 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 35 H 0.10 4.56 8.06 -2.91 -0.02 4.53 16 36 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 37 H 0.10 5.60 6.16 -2.91 -0.02 5.59 16 38 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 0.92 8.01 -2.39 -0.02 0.90 16 Total: -1.00 -58.95 334.93 2.75 -56.20 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.22 Total: 33.68 kcal Atomic # 6 Polarization: -66.47 SS G_CDS: 3.48 Total: -62.99 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -2.98 Total: -68.15 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.27 kcal Total: -58.95 2.75 -56.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399238597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.320 kcal (2) G-P(sol) polarization free energy of solvation -58.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds