Wall clock time and date at job start Mon Mar 30 2020 06:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46921 * 2 1 4 4 C 1.50691 * 109.47299 * 239.99242 * 2 1 3 5 5 H 1.07998 * 120.00343 * 240.00280 * 4 2 1 6 6 C 1.37881 * 119.99954 * 60.00095 * 4 2 1 7 7 N 1.31513 * 119.99732 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00422 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47274 * 59.99799 * 8 6 4 10 10 H 1.48499 * 109.47674 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47087 * 300.00291 * 8 6 4 12 12 N 1.46505 * 109.46922 * 119.99416 * 2 1 3 13 13 C 1.39672 * 119.99951 * 274.99978 * 12 2 1 14 14 C 1.38933 * 120.05644 * 0.02562 * 13 12 2 15 15 C 1.38147 * 119.98241 * 179.97438 * 14 13 12 16 16 C 1.38469 * 119.72458 * 359.97438 * 15 14 13 17 17 C 1.37105 * 120.43516 * 359.97438 * 16 15 14 18 18 C 1.38268 * 120.40140 * 0.03121 * 17 16 15 19 19 C 1.51475 * 120.14282 * 180.02562 * 17 16 15 20 20 C 1.53057 * 108.46002 * 289.28167 * 19 17 16 21 21 C 1.51596 * 110.93960 * 85.61346 * 20 19 17 22 22 C 1.51593 * 114.42076 * 291.87482 * 21 20 19 23 23 C 1.51479 * 119.44011 * 180.02562 * 16 15 14 24 24 H 1.08996 * 109.47144 * 300.00263 * 1 2 3 25 25 H 1.09000 * 109.46905 * 60.00672 * 1 2 3 26 26 H 1.09005 * 109.47066 * 180.02562 * 1 2 3 27 27 H 0.97008 * 120.00060 * 180.02562 * 7 6 4 28 28 H 0.96996 * 119.99732 * 95.00408 * 12 2 1 29 29 H 1.07997 * 120.00453 * 359.97129 * 14 13 12 30 30 H 1.07997 * 120.13450 * 180.02562 * 15 14 13 31 31 H 1.08006 * 120.21609 * 179.97438 * 18 17 16 32 32 H 1.09000 * 109.63526 * 169.58837 * 19 17 16 33 33 H 1.08993 * 109.63408 * 48.97527 * 19 17 16 34 34 H 1.08999 * 109.18915 * 325.23782 * 20 19 17 35 35 H 1.09005 * 109.14470 * 205.95885 * 20 19 17 36 36 H 1.09002 * 108.48937 * 53.14393 * 21 20 19 37 37 H 1.08994 * 108.49973 * 170.58872 * 21 20 19 38 38 H 1.09000 * 109.18563 * 188.51033 * 22 21 20 39 39 H 1.09001 * 109.18059 * 307.75093 * 22 21 20 40 40 H 1.08995 * 109.64178 * 10.36597 * 23 16 15 41 41 H 1.08998 * 109.63591 * 130.99204 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9436 0.8299 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8282 -2.5201 -4.0079 10 1 1.8280 -0.4197 -5.2204 11 1 3.8076 -1.1193 -4.0075 12 7 2.0183 -0.6905 1.1963 13 6 2.1517 0.0064 2.3994 14 6 1.8211 1.3543 2.4631 15 6 1.9531 2.0420 3.6539 16 6 2.4148 1.3821 4.7803 17 6 2.7409 0.0517 4.7210 18 6 2.6133 -0.6478 3.5351 19 6 3.2448 -0.6638 5.9574 20 6 4.6542 -0.1559 6.2706 21 6 4.6014 1.1071 7.1074 22 6 4.0483 2.3174 6.3812 23 6 2.5565 2.1422 6.0828 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 0.7090 1.1611 -3.4845 28 1 2.2490 -1.6316 1.1528 29 1 1.4611 1.8643 1.5818 30 1 1.6965 3.0897 3.7063 31 1 2.8714 -1.6957 3.4917 32 1 3.2749 -1.7376 5.7724 33 1 2.5838 -0.4523 6.7978 34 1 5.1749 0.0548 5.3366 35 1 5.1981 -0.9257 6.8181 36 1 3.9810 0.9160 7.9830 37 1 5.6107 1.3392 7.4473 38 1 4.1879 3.2024 7.0020 39 1 4.5881 2.4500 5.4435 40 1 2.0840 3.1200 5.9897 41 1 2.0852 1.5794 6.8885 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404533466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:46 Heat of formation + Delta-G solvation = -4.320143 kcal Electronic energy + Delta-G solvation = -19217.773800 eV Core-core repulsion = 16481.794888 eV Total energy + Delta-G solvation = -2735.978912 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.65240 -37.07179 -34.91513 -32.89838 -32.46465 -30.19816 -29.59339 -27.41657 -25.40818 -24.78634 -23.36813 -21.91261 -20.81257 -20.19978 -18.83848 -17.18992 -16.02900 -15.55754 -14.99150 -14.82782 -14.36380 -14.06482 -13.62880 -13.51406 -12.93608 -12.72644 -12.67771 -12.65606 -12.33994 -11.89118 -11.52231 -11.49342 -11.11709 -10.99533 -10.81084 -10.65953 -10.58735 -10.45573 -10.40336 -10.32219 -10.22656 -9.90158 -9.15325 -8.94496 -8.47940 -8.14160 -6.41811 -6.15036 -4.23386 2.03339 2.28637 3.24390 3.29286 3.31338 4.26591 4.46462 4.61786 4.77407 4.93068 4.98115 5.17085 5.24176 5.38031 5.47397 5.50964 5.60225 5.73884 5.79336 5.88978 5.96681 6.02840 6.10026 6.16827 6.19342 6.31965 6.34899 6.43353 6.56497 6.62320 6.74324 6.95189 7.04872 7.09464 7.11796 7.32148 7.39656 7.59763 7.70708 7.87479 8.09236 8.41062 8.74352 8.94498 9.43748 10.90486 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037664 B = 0.004241 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.227632 B = 6601.155597 C = 6872.432036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.268 3.732 3 H 0.039 0.961 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.727 5.727 13 C 0.237 3.763 14 C -0.203 4.203 15 C -0.068 4.068 16 C -0.166 4.166 17 C -0.032 4.032 18 C -0.218 4.218 19 C -0.077 4.077 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.115 4.115 23 C -0.065 4.065 24 H 0.013 0.987 25 H 0.089 0.911 26 H 0.027 0.973 27 H 0.265 0.735 28 H 0.388 0.612 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.986 0.703 16.176 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.165 3.835 3 H 0.057 0.943 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.349 5.349 13 C 0.128 3.872 14 C -0.226 4.226 15 C -0.086 4.086 16 C -0.169 4.169 17 C -0.033 4.033 18 C -0.241 4.241 19 C -0.114 4.114 20 C -0.150 4.150 21 C -0.152 4.152 22 C -0.152 4.152 23 C -0.102 4.102 24 H 0.032 0.968 25 H 0.107 0.893 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.221 0.779 29 H 0.141 0.859 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.825 0.935 15.798 16.281 hybrid contribution 0.338 -0.822 -1.066 1.388 sum 4.163 0.113 14.732 15.309 Atomic orbital electron populations 1.22177 0.98917 0.99447 1.00517 1.18689 0.90606 0.93418 0.80785 0.94297 1.21183 1.32138 1.13197 0.90358 0.92256 1.24871 0.94795 0.94979 0.99025 1.69869 1.36060 1.22553 1.23985 0.86511 0.79204 0.79641 0.81785 1.20183 1.21097 1.20177 1.45556 1.69684 1.11969 1.07665 1.18040 0.91073 0.91550 0.86560 1.20789 1.09373 0.93595 0.98809 1.20762 0.97410 0.98456 0.92020 1.19089 1.08463 0.93959 0.95384 1.19120 0.97091 0.93146 0.93922 1.20419 1.11885 0.99504 0.92328 1.20751 0.96074 0.98851 0.95748 1.21235 0.96650 0.96777 1.00341 1.21021 1.00487 0.95090 0.98574 1.21301 0.96327 0.97051 1.00544 1.20573 0.95652 0.98947 0.95012 0.96795 0.89287 0.95352 0.92549 0.77907 0.85865 0.87097 0.87165 0.91646 0.91248 0.91699 0.92269 0.92674 0.92866 0.92510 0.91798 0.91999 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.20 37.16 0.34 -3.33 16 2 C 0.27 6.62 2.25 -69.08 -0.16 6.47 16 3 H 0.04 1.06 6.48 -51.93 -0.34 0.72 16 4 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.54 11.32 55.43 0.63 -23.91 16 8 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.73 -15.60 5.24 -53.27 -0.28 -15.88 16 13 C 0.24 4.71 6.64 -83.76 -0.56 4.15 16 14 C -0.20 -3.97 8.85 -39.36 -0.35 -4.32 16 15 C -0.07 -1.14 9.68 -39.53 -0.38 -1.52 16 16 C -0.17 -2.55 4.99 -104.56 -0.52 -3.07 16 17 C -0.03 -0.50 4.98 -104.64 -0.52 -1.02 16 18 C -0.22 -3.78 9.53 -39.30 -0.37 -4.16 16 19 C -0.08 -0.94 5.46 -27.47 -0.15 -1.09 16 20 C -0.11 -1.24 5.65 -27.41 -0.15 -1.40 16 21 C -0.11 -1.15 5.22 -28.15 -0.15 -1.29 16 22 C -0.11 -1.26 5.65 -27.37 -0.15 -1.42 16 23 C -0.06 -0.78 5.46 -27.43 -0.15 -0.93 16 24 H 0.01 0.30 7.70 -51.93 -0.40 -0.10 16 25 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.39 7.82 8.55 -40.82 -0.35 7.47 16 29 H 0.12 2.59 6.11 -52.49 -0.32 2.27 16 30 H 0.11 1.62 7.97 -52.49 -0.42 1.21 16 31 H 0.11 1.76 7.97 -52.48 -0.42 1.34 16 32 H 0.06 0.75 7.91 -51.93 -0.41 0.34 16 33 H 0.07 0.79 6.90 -51.93 -0.36 0.43 16 34 H 0.06 0.82 7.85 -51.93 -0.41 0.41 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.51 7.83 -51.93 -0.41 0.10 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.80 7.85 -51.93 -0.41 0.39 16 40 H 0.06 0.70 7.91 -51.93 -0.41 0.29 16 41 H 0.06 0.71 6.90 -51.93 -0.36 0.36 16 LS Contribution 317.62 15.07 4.79 4.79 Total: -1.00 -27.22 317.62 -10.11 -37.32 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.55 Total: 7.63 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -3.67 Total: -25.69 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.35 Total: -39.79 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.22 -10.11 -37.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404533466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.003 kcal (2) G-P(sol) polarization free energy of solvation -27.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds