Wall clock time and date at job start Mon Mar 30 2020 06:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46921 * 2 1 4 4 C 1.50691 * 109.47299 * 239.99242 * 2 1 3 5 5 H 1.07998 * 120.00343 * 240.00280 * 4 2 1 6 6 C 1.37881 * 119.99954 * 60.00095 * 4 2 1 7 7 N 1.31513 * 119.99732 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00422 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47274 * 59.99799 * 8 6 4 10 10 H 1.48499 * 109.47674 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47087 * 300.00291 * 8 6 4 12 12 N 1.46505 * 109.46922 * 119.99416 * 2 1 3 13 13 C 1.39672 * 119.99951 * 274.99978 * 12 2 1 14 14 C 1.38933 * 120.05644 * 0.02562 * 13 12 2 15 15 C 1.38147 * 119.98241 * 179.97438 * 14 13 12 16 16 C 1.38469 * 119.72458 * 359.97438 * 15 14 13 17 17 C 1.37105 * 120.43516 * 359.97438 * 16 15 14 18 18 C 1.38268 * 120.40140 * 0.03121 * 17 16 15 19 19 C 1.51475 * 120.14282 * 180.02562 * 17 16 15 20 20 C 1.53057 * 108.46002 * 289.28167 * 19 17 16 21 21 C 1.51596 * 110.93960 * 85.61346 * 20 19 17 22 22 C 1.51593 * 114.42076 * 291.87482 * 21 20 19 23 23 C 1.51479 * 119.44011 * 180.02562 * 16 15 14 24 24 H 1.08996 * 109.47144 * 300.00263 * 1 2 3 25 25 H 1.09000 * 109.46905 * 60.00672 * 1 2 3 26 26 H 1.09005 * 109.47066 * 180.02562 * 1 2 3 27 27 H 0.97008 * 120.00060 * 180.02562 * 7 6 4 28 28 H 0.96996 * 119.99732 * 95.00408 * 12 2 1 29 29 H 1.07997 * 120.00453 * 359.97129 * 14 13 12 30 30 H 1.07997 * 120.13450 * 180.02562 * 15 14 13 31 31 H 1.08006 * 120.21609 * 179.97438 * 18 17 16 32 32 H 1.09000 * 109.63526 * 169.58837 * 19 17 16 33 33 H 1.08993 * 109.63408 * 48.97527 * 19 17 16 34 34 H 1.08999 * 109.18915 * 325.23782 * 20 19 17 35 35 H 1.09005 * 109.14470 * 205.95885 * 20 19 17 36 36 H 1.09002 * 108.48937 * 53.14393 * 21 20 19 37 37 H 1.08994 * 108.49973 * 170.58872 * 21 20 19 38 38 H 1.09000 * 109.18563 * 188.51033 * 22 21 20 39 39 H 1.09001 * 109.18059 * 307.75093 * 22 21 20 40 40 H 1.08995 * 109.64178 * 10.36597 * 23 16 15 41 41 H 1.08998 * 109.63591 * 130.99204 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9436 0.8299 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8282 -2.5201 -4.0079 10 1 1.8280 -0.4197 -5.2204 11 1 3.8076 -1.1193 -4.0075 12 7 2.0183 -0.6905 1.1963 13 6 2.1517 0.0064 2.3994 14 6 1.8211 1.3543 2.4631 15 6 1.9531 2.0420 3.6539 16 6 2.4148 1.3821 4.7803 17 6 2.7409 0.0517 4.7210 18 6 2.6133 -0.6478 3.5351 19 6 3.2448 -0.6638 5.9574 20 6 4.6542 -0.1559 6.2706 21 6 4.6014 1.1071 7.1074 22 6 4.0483 2.3174 6.3812 23 6 2.5565 2.1422 6.0828 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 0.7090 1.1611 -3.4845 28 1 2.2490 -1.6316 1.1528 29 1 1.4611 1.8643 1.5818 30 1 1.6965 3.0897 3.7063 31 1 2.8714 -1.6957 3.4917 32 1 3.2749 -1.7376 5.7724 33 1 2.5838 -0.4523 6.7978 34 1 5.1749 0.0548 5.3366 35 1 5.1981 -0.9257 6.8181 36 1 3.9810 0.9160 7.9830 37 1 5.6107 1.3392 7.4473 38 1 4.1879 3.2024 7.0020 39 1 4.5881 2.4500 5.4435 40 1 2.0840 3.1200 5.9897 41 1 2.0852 1.5794 6.8885 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404533466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:46 Heat of formation + Delta-G solvation = -17.095981 kcal Electronic energy + Delta-G solvation = -19218.327802 eV Core-core repulsion = 16481.794888 eV Total energy + Delta-G solvation = -2736.532914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91935 -38.44672 -36.41736 -34.51404 -33.73513 -31.69878 -30.97661 -28.90418 -27.36425 -26.03271 -24.56583 -23.24363 -22.51061 -21.08268 -20.25196 -18.98931 -17.52156 -17.16631 -16.53536 -16.13153 -15.63437 -15.38865 -14.96231 -14.57889 -14.40623 -14.19757 -14.09169 -13.91813 -13.69719 -13.27697 -13.12809 -12.93896 -12.79262 -12.62310 -12.40861 -12.27384 -12.12713 -11.73394 -11.49656 -11.41361 -11.36505 -11.18862 -11.08306 -10.65430 -10.35556 -9.48983 -8.21949 -7.95089 -6.35824 0.65142 0.90805 1.41018 1.42343 1.50343 2.35897 2.96580 3.06980 3.11573 3.83210 3.99996 4.10457 4.22208 4.27105 4.32029 4.51255 4.55656 4.64172 4.69949 4.81081 4.84661 4.87945 4.96054 5.04086 5.05652 5.08422 5.17424 5.22595 5.33804 5.38734 5.41091 5.43150 5.46145 5.57120 5.61266 5.66908 5.77925 5.83201 6.01478 6.08834 6.28826 6.56172 6.86390 7.23516 7.37545 8.85299 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037664 B = 0.004241 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.227632 B = 6601.155597 C = 6872.432036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.278 3.722 3 H 0.006 0.994 4 C -0.550 4.550 5 H 0.060 0.940 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.967 3.033 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.273 1.273 12 N -0.734 5.734 13 C 0.209 3.791 14 C -0.228 4.228 15 C -0.073 4.073 16 C -0.158 4.158 17 C -0.033 4.033 18 C -0.219 4.219 19 C -0.075 4.075 20 C -0.111 4.111 21 C -0.115 4.115 22 C -0.113 4.113 23 C -0.064 4.064 24 H 0.020 0.980 25 H 0.066 0.934 26 H 0.027 0.973 27 H 0.266 0.734 28 H 0.392 0.608 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.922 0.112 18.629 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.174 3.826 3 H 0.024 0.976 4 C -0.588 4.588 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.792 3.208 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.198 1.198 12 N -0.359 5.359 13 C 0.102 3.898 14 C -0.251 4.251 15 C -0.092 4.092 16 C -0.161 4.161 17 C -0.034 4.034 18 C -0.242 4.242 19 C -0.112 4.112 20 C -0.148 4.148 21 C -0.152 4.152 22 C -0.151 4.151 23 C -0.101 4.101 24 H 0.039 0.961 25 H 0.085 0.915 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.226 0.774 29 H 0.114 0.886 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.770 0.348 18.297 18.912 hybrid contribution 0.072 -0.569 -1.679 1.774 sum 4.842 -0.221 16.619 17.311 Atomic orbital electron populations 1.21978 0.98848 0.99023 0.99687 1.18304 0.90572 0.91871 0.81865 0.97619 1.21513 1.32402 1.13439 0.91442 0.92179 1.25697 0.94885 0.95636 1.01943 1.70000 1.36878 1.23711 1.24638 0.85480 0.78611 0.78692 0.78053 1.19376 1.20642 1.19813 1.45214 1.71259 1.12037 1.07425 1.18279 0.92862 0.91857 0.86772 1.20760 1.11210 0.94012 0.99154 1.21026 0.97182 0.99401 0.91559 1.19563 1.05962 0.94202 0.96343 1.19592 0.95751 0.93427 0.94629 1.20662 1.11139 1.00252 0.92140 1.20839 0.96988 0.98990 0.94357 1.21233 0.95648 0.98079 0.99867 1.21034 1.01627 0.93939 0.98642 1.21289 0.94988 0.98654 1.00135 1.20671 0.96927 0.99179 0.93300 0.96081 0.91491 0.95337 0.92478 0.77425 0.88601 0.85271 0.85899 0.90847 0.89522 0.93844 0.90176 0.90988 0.91587 0.90424 0.93891 0.91011 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.90 9.20 71.98 0.66 -6.23 16 2 C 0.28 14.44 2.25 44.24 0.10 14.54 16 3 H 0.01 0.35 6.48 -2.39 -0.02 0.34 16 4 C -0.55 -30.16 8.73 25.60 0.22 -29.93 16 5 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.91 -52.06 11.32 21.45 0.24 -51.82 16 8 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 N -0.73 -32.83 5.24 -322.45 -1.69 -34.52 16 13 C 0.21 8.56 6.64 38.23 0.25 8.81 16 14 C -0.23 -9.37 8.85 22.41 0.20 -9.17 16 15 C -0.07 -2.45 9.68 22.30 0.22 -2.24 16 16 C -0.16 -4.59 4.99 -19.83 -0.10 -4.69 16 17 C -0.03 -0.97 4.98 -19.88 -0.10 -1.07 16 18 C -0.22 -7.52 9.53 22.45 0.21 -7.31 16 19 C -0.07 -1.58 5.46 30.11 0.16 -1.42 16 20 C -0.11 -2.08 5.65 30.15 0.17 -1.91 16 21 C -0.12 -1.85 5.22 29.67 0.15 -1.70 16 22 C -0.11 -2.12 5.65 30.18 0.17 -1.95 16 23 C -0.06 -1.34 5.46 30.14 0.16 -1.17 16 24 H 0.02 0.98 7.70 -2.39 -0.02 0.96 16 25 H 0.07 3.67 6.07 -2.39 -0.01 3.65 16 26 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.27 14.36 8.31 -92.70 -0.77 13.59 16 28 H 0.39 16.33 8.55 -92.71 -0.79 15.54 16 29 H 0.10 4.38 6.11 -2.91 -0.02 4.36 16 30 H 0.13 3.73 7.97 -2.91 -0.02 3.71 16 31 H 0.12 3.82 7.97 -2.91 -0.02 3.80 16 32 H 0.07 1.46 7.91 -2.39 -0.02 1.44 16 33 H 0.09 1.58 6.90 -2.39 -0.02 1.57 16 34 H 0.04 1.01 7.85 -2.39 -0.02 0.99 16 35 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.07 0.96 7.83 -2.39 -0.02 0.94 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 39 H 0.04 0.99 7.85 -2.39 -0.02 0.97 16 40 H 0.07 1.39 7.91 -2.39 -0.02 1.37 16 41 H 0.08 1.46 6.90 -2.39 -0.02 1.44 16 Total: -1.00 -60.17 317.62 3.74 -56.43 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.22 Total: 28.89 kcal Atomic # 6 Polarization: -46.92 SS G_CDS: 2.94 Total: -43.97 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -1.45 Total: -86.34 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -60.17 3.74 -56.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404533466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.338 kcal (2) G-P(sol) polarization free energy of solvation -60.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds