Wall clock time and date at job start Mon Mar 30 2020 06:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47066 * 2 1 4 4 C 1.50702 * 109.46989 * 120.00129 * 2 1 3 5 5 H 1.07994 * 119.99826 * 120.00439 * 4 2 1 6 6 C 1.37871 * 119.99759 * 299.99798 * 4 2 1 7 7 N 1.31516 * 120.00574 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99725 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47014 * 90.00087 * 8 6 4 10 10 H 1.48501 * 109.47191 * 209.99858 * 8 6 4 11 11 H 1.48500 * 109.47380 * 330.00195 * 8 6 4 12 12 N 1.46498 * 109.47311 * 240.00293 * 2 1 3 13 13 C 1.39672 * 120.00025 * 84.99661 * 12 2 1 14 14 C 1.38933 * 120.05541 * 0.02562 * 13 12 2 15 15 C 1.38147 * 119.98136 * 179.97438 * 14 13 12 16 16 C 1.38471 * 119.72512 * 359.97438 * 15 14 13 17 17 C 1.37105 * 120.43462 * 0.02562 * 16 15 14 18 18 C 1.38277 * 120.40332 * 0.02562 * 17 16 15 19 19 C 1.51475 * 120.14282 * 180.02562 * 17 16 15 20 20 C 1.53057 * 108.46002 * 289.28167 * 19 17 16 21 21 C 1.51596 * 110.93960 * 85.61346 * 20 19 17 22 22 C 1.51593 * 114.42076 * 291.87482 * 21 20 19 23 23 C 1.51479 * 119.44067 * 180.02562 * 16 15 14 24 24 H 1.09002 * 109.47056 * 299.99663 * 1 2 3 25 25 H 1.08998 * 109.47475 * 59.99887 * 1 2 3 26 26 H 1.09002 * 109.47066 * 180.02562 * 1 2 3 27 27 H 0.96997 * 120.00067 * 180.02562 * 7 6 4 28 28 H 0.96996 * 119.99777 * 265.00092 * 12 2 1 29 29 H 1.07999 * 120.00488 * 359.96451 * 14 13 12 30 30 H 1.08000 * 120.14072 * 180.02562 * 15 14 13 31 31 H 1.07997 * 120.21519 * 179.97438 * 18 17 16 32 32 H 1.09000 * 109.63526 * 169.58837 * 19 17 16 33 33 H 1.08993 * 109.63408 * 48.97527 * 19 17 16 34 34 H 1.08999 * 109.18915 * 325.23782 * 20 19 17 35 35 H 1.09005 * 109.14470 * 205.95885 * 20 19 17 36 36 H 1.09002 * 108.48937 * 53.14393 * 21 20 19 37 37 H 1.08994 * 108.49973 * 170.58872 * 21 20 19 38 38 H 1.08999 * 109.18593 * 188.50483 * 22 21 20 39 39 H 1.09001 * 109.18059 * 307.75093 * 22 21 20 40 40 H 1.08995 * 109.63814 * 10.36701 * 23 16 15 41 41 H 1.08993 * 109.63703 * 130.98586 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6305 -0.5441 4.4118 10 1 1.3444 -0.9490 5.1123 11 1 2.4880 -2.5654 3.7122 12 7 2.0184 -0.6905 -1.1962 13 6 2.1517 0.0063 -2.3993 14 6 1.8221 1.3544 -2.4628 15 6 1.9550 2.0423 -3.6535 16 6 2.4178 1.3826 -4.7795 17 6 2.7440 0.0522 -4.7201 18 6 2.6144 -0.6478 -3.5347 19 6 3.2502 -0.6628 -5.9558 20 6 2.0865 -0.8155 -6.9382 21 6 1.9387 0.4230 -7.7998 22 6 1.4800 1.6576 -7.0491 23 6 2.5617 2.1432 -6.0816 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.7088 1.1612 3.4844 28 1 2.2490 -1.6317 -1.1526 29 1 1.4618 1.8644 -1.5816 30 1 1.6999 3.0904 -3.7057 31 1 2.8718 -1.6958 -3.4914 32 1 3.6287 -1.6471 -5.6803 33 1 4.0452 -0.0775 -6.4178 34 1 1.1644 -0.9751 -6.3793 35 1 2.2706 -1.6778 -7.5792 36 1 2.9012 0.6383 -8.2637 37 1 1.2180 0.2110 -8.5895 38 1 1.2574 2.4496 -7.7642 39 1 0.5771 1.4199 -6.4866 40 1 2.4366 3.2103 -5.8982 41 1 3.5466 1.9549 -6.5089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404533467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:49 Heat of formation + Delta-G solvation = -4.379524 kcal Electronic energy + Delta-G solvation = -19220.348599 eV Core-core repulsion = 16484.367112 eV Total energy + Delta-G solvation = -2735.981487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.65481 -37.07598 -34.91805 -32.90148 -32.46879 -30.19921 -29.59664 -27.41794 -25.41088 -24.79021 -23.36992 -21.91452 -20.81221 -20.20520 -18.84030 -17.19146 -16.02499 -15.56146 -14.99692 -14.83581 -14.37783 -14.07757 -13.61699 -13.40071 -13.11793 -12.74409 -12.71307 -12.59194 -12.22551 -11.89677 -11.61347 -11.48741 -11.05680 -11.03859 -10.85593 -10.69268 -10.50732 -10.45959 -10.38640 -10.33471 -10.23004 -9.90569 -9.16168 -8.93520 -8.48366 -8.14204 -6.41867 -6.15298 -4.23591 2.03278 2.28591 3.23021 3.29749 3.32339 4.26542 4.46309 4.61771 4.76860 4.92645 4.97705 5.16951 5.23887 5.37643 5.47328 5.50745 5.59964 5.73537 5.79169 5.88983 5.96557 6.02731 6.09602 6.16437 6.18960 6.31697 6.34541 6.42803 6.56400 6.62258 6.74200 6.94907 7.04778 7.09377 7.11727 7.32097 7.39530 7.59802 7.70638 7.87429 8.09058 8.40997 8.74446 8.94474 9.43688 10.90278 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.043085 B = 0.004177 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.720244 B = 6702.505545 C = 6998.233377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.267 3.733 3 H 0.039 0.961 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.727 5.727 13 C 0.237 3.763 14 C -0.203 4.203 15 C -0.068 4.068 16 C -0.166 4.166 17 C -0.032 4.032 18 C -0.218 4.218 19 C -0.077 4.077 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.114 4.114 23 C -0.065 4.065 24 H 0.089 0.911 25 H 0.013 0.987 26 H 0.027 0.973 27 H 0.264 0.736 28 H 0.388 0.612 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.909 0.158 -16.734 16.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.165 3.835 3 H 0.057 0.943 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.349 5.349 13 C 0.128 3.872 14 C -0.226 4.226 15 C -0.086 4.086 16 C -0.169 4.169 17 C -0.033 4.033 18 C -0.241 4.241 19 C -0.114 4.114 20 C -0.150 4.150 21 C -0.152 4.152 22 C -0.152 4.152 23 C -0.102 4.102 24 H 0.107 0.893 25 H 0.032 0.968 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.221 0.779 29 H 0.141 0.859 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.729 0.378 -16.362 16.457 hybrid contribution 0.311 -0.812 1.063 1.373 sum 2.039 -0.434 -15.299 15.440 Atomic orbital electron populations 1.22175 0.98914 0.99450 1.00515 1.18696 0.90610 0.93429 0.80806 0.94287 1.21222 1.32042 1.13193 0.90348 0.92196 1.24872 0.94781 0.95002 0.99039 1.69877 1.36071 1.22645 1.23878 0.86454 0.78612 0.79920 0.82172 1.20539 1.21051 1.19877 1.45554 1.69684 1.11974 1.07660 1.18040 0.91076 0.91546 0.86561 1.20789 1.09377 0.93596 0.98802 1.20763 0.97406 0.98486 0.91991 1.19088 1.08638 0.93994 0.95171 1.19122 0.97386 0.93092 0.93676 1.20420 1.11922 0.99476 0.92316 1.20753 0.97387 0.99624 0.93677 1.21233 0.99151 0.97210 0.97380 1.21022 1.00999 0.95101 0.98060 1.21281 0.99233 0.96792 0.97894 1.20554 0.98343 0.98290 0.93011 0.89288 0.96797 0.95350 0.92607 0.77903 0.85864 0.87097 0.87162 0.91637 0.91232 0.91734 0.92273 0.92661 0.92874 0.92510 0.91829 0.91999 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.20 37.16 0.34 -3.33 16 2 C 0.27 6.61 2.25 -69.08 -0.16 6.46 16 3 H 0.04 1.06 6.48 -51.93 -0.34 0.72 16 4 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.54 11.32 55.43 0.63 -23.92 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.73 -15.60 5.24 -53.27 -0.28 -15.87 16 13 C 0.24 4.71 6.64 -83.76 -0.56 4.15 16 14 C -0.20 -3.97 8.85 -39.36 -0.35 -4.32 16 15 C -0.07 -1.13 9.68 -39.53 -0.38 -1.52 16 16 C -0.17 -2.55 4.99 -104.56 -0.52 -3.07 16 17 C -0.03 -0.50 4.98 -104.64 -0.52 -1.02 16 18 C -0.22 -3.78 9.53 -39.30 -0.37 -4.16 16 19 C -0.08 -0.94 5.46 -27.47 -0.15 -1.09 16 20 C -0.11 -1.23 5.65 -27.41 -0.15 -1.38 16 21 C -0.11 -1.14 5.22 -28.15 -0.15 -1.28 16 22 C -0.11 -1.25 5.64 -27.43 -0.15 -1.40 16 23 C -0.06 -0.78 5.46 -27.48 -0.15 -0.93 16 24 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 25 H 0.01 0.30 7.71 -51.93 -0.40 -0.10 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 28 H 0.39 7.83 8.55 -40.82 -0.35 7.48 16 29 H 0.12 2.59 6.11 -52.49 -0.32 2.27 16 30 H 0.11 1.62 7.97 -52.49 -0.42 1.21 16 31 H 0.11 1.76 7.97 -52.49 -0.42 1.34 16 32 H 0.06 0.76 7.91 -51.93 -0.41 0.35 16 33 H 0.07 0.79 6.90 -51.93 -0.36 0.43 16 34 H 0.06 0.80 7.85 -51.93 -0.41 0.39 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.51 7.83 -51.93 -0.41 0.10 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.78 7.85 -51.93 -0.41 0.38 16 40 H 0.06 0.70 7.91 -51.93 -0.41 0.29 16 41 H 0.06 0.72 6.90 -51.93 -0.36 0.36 16 LS Contribution 317.62 15.07 4.79 4.79 Total: -1.00 -27.24 317.62 -10.11 -37.35 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.55 Total: 7.58 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -3.67 Total: -25.65 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.35 Total: -39.79 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.24 -10.11 -37.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404533467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.967 kcal (2) G-P(sol) polarization free energy of solvation -27.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds