Wall clock time and date at job start Mon Mar 30 2020 06:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47066 * 2 1 4 4 C 1.50702 * 109.46989 * 120.00129 * 2 1 3 5 5 H 1.07994 * 119.99826 * 120.00439 * 4 2 1 6 6 C 1.37871 * 119.99759 * 299.99798 * 4 2 1 7 7 N 1.31516 * 120.00574 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99725 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47014 * 90.00087 * 8 6 4 10 10 H 1.48501 * 109.47191 * 209.99858 * 8 6 4 11 11 H 1.48500 * 109.47380 * 330.00195 * 8 6 4 12 12 N 1.46498 * 109.47311 * 240.00293 * 2 1 3 13 13 C 1.39672 * 120.00025 * 84.99661 * 12 2 1 14 14 C 1.38933 * 120.05541 * 0.02562 * 13 12 2 15 15 C 1.38147 * 119.98136 * 179.97438 * 14 13 12 16 16 C 1.38471 * 119.72512 * 359.97438 * 15 14 13 17 17 C 1.37105 * 120.43462 * 0.02562 * 16 15 14 18 18 C 1.38277 * 120.40332 * 0.02562 * 17 16 15 19 19 C 1.51475 * 120.14282 * 180.02562 * 17 16 15 20 20 C 1.53057 * 108.46002 * 289.28167 * 19 17 16 21 21 C 1.51596 * 110.93960 * 85.61346 * 20 19 17 22 22 C 1.51593 * 114.42076 * 291.87482 * 21 20 19 23 23 C 1.51479 * 119.44067 * 180.02562 * 16 15 14 24 24 H 1.09002 * 109.47056 * 299.99663 * 1 2 3 25 25 H 1.08998 * 109.47475 * 59.99887 * 1 2 3 26 26 H 1.09002 * 109.47066 * 180.02562 * 1 2 3 27 27 H 0.96997 * 120.00067 * 180.02562 * 7 6 4 28 28 H 0.96996 * 119.99777 * 265.00092 * 12 2 1 29 29 H 1.07999 * 120.00488 * 359.96451 * 14 13 12 30 30 H 1.08000 * 120.14072 * 180.02562 * 15 14 13 31 31 H 1.07997 * 120.21519 * 179.97438 * 18 17 16 32 32 H 1.09000 * 109.63526 * 169.58837 * 19 17 16 33 33 H 1.08993 * 109.63408 * 48.97527 * 19 17 16 34 34 H 1.08999 * 109.18915 * 325.23782 * 20 19 17 35 35 H 1.09005 * 109.14470 * 205.95885 * 20 19 17 36 36 H 1.09002 * 108.48937 * 53.14393 * 21 20 19 37 37 H 1.08994 * 108.49973 * 170.58872 * 21 20 19 38 38 H 1.08999 * 109.18593 * 188.50483 * 22 21 20 39 39 H 1.09001 * 109.18059 * 307.75093 * 22 21 20 40 40 H 1.08995 * 109.63814 * 10.36701 * 23 16 15 41 41 H 1.08993 * 109.63703 * 130.98586 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6305 -0.5441 4.4118 10 1 1.3444 -0.9490 5.1123 11 1 2.4880 -2.5654 3.7122 12 7 2.0184 -0.6905 -1.1962 13 6 2.1517 0.0063 -2.3993 14 6 1.8221 1.3544 -2.4628 15 6 1.9550 2.0423 -3.6535 16 6 2.4178 1.3826 -4.7795 17 6 2.7440 0.0522 -4.7201 18 6 2.6144 -0.6478 -3.5347 19 6 3.2502 -0.6628 -5.9558 20 6 2.0865 -0.8155 -6.9382 21 6 1.9387 0.4230 -7.7998 22 6 1.4800 1.6576 -7.0491 23 6 2.5617 2.1432 -6.0816 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.7088 1.1612 3.4844 28 1 2.2490 -1.6317 -1.1526 29 1 1.4618 1.8644 -1.5816 30 1 1.6999 3.0904 -3.7057 31 1 2.8718 -1.6958 -3.4914 32 1 3.6287 -1.6471 -5.6803 33 1 4.0452 -0.0775 -6.4178 34 1 1.1644 -0.9751 -6.3793 35 1 2.2706 -1.6778 -7.5792 36 1 2.9012 0.6383 -8.2637 37 1 1.2180 0.2110 -8.5895 38 1 1.2574 2.4496 -7.7642 39 1 0.5771 1.4199 -6.4866 40 1 2.4366 3.2103 -5.8982 41 1 3.5466 1.9549 -6.5089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404533467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:48 Heat of formation + Delta-G solvation = -17.167151 kcal Electronic energy + Delta-G solvation = -19220.903112 eV Core-core repulsion = 16484.367112 eV Total energy + Delta-G solvation = -2736.536000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.92028 -38.44857 -36.41877 -34.51455 -33.73856 -31.69854 -30.97832 -28.90483 -27.36786 -26.03468 -24.56468 -23.24449 -22.51048 -21.08089 -20.25292 -18.99137 -17.51786 -17.16777 -16.53571 -16.13177 -15.67292 -15.39679 -14.77576 -14.57658 -14.53477 -14.37184 -14.07675 -13.71520 -13.65601 -13.42930 -13.07719 -12.92519 -12.79898 -12.64013 -12.47000 -12.25221 -12.08934 -11.74347 -11.48011 -11.40748 -11.36396 -11.18364 -11.09336 -10.65136 -10.36166 -9.48988 -8.22161 -7.95154 -6.36021 0.65109 0.90787 1.40860 1.41128 1.51757 2.35788 2.96491 3.07064 3.11395 3.83274 3.99987 4.10653 4.22174 4.27049 4.32079 4.51261 4.55673 4.64413 4.69712 4.81056 4.84727 4.88051 4.95638 5.04118 5.06005 5.08198 5.17490 5.22689 5.33976 5.38773 5.41038 5.43258 5.46265 5.57254 5.61350 5.66885 5.77882 5.82942 6.01448 6.08674 6.28763 6.56216 6.86455 7.23457 7.37479 8.85283 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.043085 B = 0.004177 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.720244 B = 6702.505545 C = 6998.233377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.278 3.722 3 H 0.007 0.993 4 C -0.549 4.549 5 H 0.060 0.940 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.967 3.033 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.267 1.267 12 N -0.734 5.734 13 C 0.209 3.791 14 C -0.228 4.228 15 C -0.073 4.073 16 C -0.158 4.158 17 C -0.033 4.033 18 C -0.219 4.219 19 C -0.075 4.075 20 C -0.110 4.110 21 C -0.115 4.115 22 C -0.113 4.113 23 C -0.064 4.064 24 H 0.066 0.934 25 H 0.020 0.980 26 H 0.027 0.973 27 H 0.266 0.734 28 H 0.392 0.608 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 -0.410 -19.156 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.174 3.826 3 H 0.024 0.976 4 C -0.587 4.587 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.792 3.208 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.191 1.191 12 N -0.359 5.359 13 C 0.102 3.898 14 C -0.251 4.251 15 C -0.092 4.092 16 C -0.161 4.161 17 C -0.034 4.034 18 C -0.242 4.242 19 C -0.112 4.112 20 C -0.148 4.148 21 C -0.153 4.153 22 C -0.150 4.150 23 C -0.101 4.101 24 H 0.085 0.915 25 H 0.039 0.961 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.226 0.774 29 H 0.114 0.886 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.751 -0.186 -18.831 19.032 hybrid contribution 0.009 -0.568 1.665 1.759 sum 2.760 -0.754 -17.167 17.404 Atomic orbital electron populations 1.21978 0.98881 0.99017 0.99665 1.18310 0.90550 0.91902 0.81884 0.97569 1.21544 1.32303 1.13419 0.91430 0.92158 1.25698 0.94873 0.95658 1.01956 1.70005 1.36881 1.23800 1.24577 0.85423 0.78009 0.78979 0.78404 1.20189 1.20561 1.19130 1.45211 1.71257 1.12038 1.07424 1.18279 0.92864 0.91851 0.86771 1.20759 1.11208 0.94013 0.99149 1.21027 0.97167 0.99442 0.91528 1.19562 1.06161 0.94252 0.96091 1.19593 0.96111 0.93352 0.94338 1.20662 1.11183 1.00216 0.92128 1.20841 0.98239 0.99842 0.92287 1.21229 0.97494 0.98777 0.97271 1.21036 1.02262 0.93970 0.97988 1.21267 0.97806 0.98081 0.97861 1.20652 0.99694 0.98426 0.91334 0.91495 0.96120 0.95341 0.92487 0.77426 0.88598 0.85272 0.85898 0.90867 0.89606 0.93739 0.90183 0.91068 0.91538 0.90432 0.93796 0.91037 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.91 9.20 71.98 0.66 -6.25 16 2 C 0.28 14.42 2.25 44.25 0.10 14.52 16 3 H 0.01 0.38 6.48 -2.39 -0.02 0.36 16 4 C -0.55 -30.09 8.73 25.60 0.22 -29.87 16 5 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 6 C 0.02 1.00 5.30 84.65 0.45 1.45 16 7 N -0.91 -52.07 11.32 21.45 0.24 -51.83 16 8 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 9 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 12 N -0.73 -32.82 5.24 -322.44 -1.69 -34.50 16 13 C 0.21 8.56 6.64 38.23 0.25 8.81 16 14 C -0.23 -9.36 8.85 22.41 0.20 -9.16 16 15 C -0.07 -2.45 9.68 22.30 0.22 -2.24 16 16 C -0.16 -4.59 4.99 -19.83 -0.10 -4.69 16 17 C -0.03 -0.97 4.98 -19.87 -0.10 -1.07 16 18 C -0.22 -7.52 9.53 22.45 0.21 -7.30 16 19 C -0.07 -1.59 5.46 30.11 0.16 -1.42 16 20 C -0.11 -2.04 5.65 30.15 0.17 -1.87 16 21 C -0.12 -1.83 5.22 29.67 0.15 -1.68 16 22 C -0.11 -2.08 5.64 30.14 0.17 -1.91 16 23 C -0.06 -1.34 5.46 30.11 0.16 -1.18 16 24 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 25 H 0.02 0.96 7.71 -2.39 -0.02 0.94 16 26 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.39 16.33 8.55 -92.71 -0.79 15.54 16 29 H 0.10 4.38 6.11 -2.91 -0.02 4.36 16 30 H 0.13 3.73 7.97 -2.91 -0.02 3.71 16 31 H 0.12 3.82 7.97 -2.91 -0.02 3.79 16 32 H 0.07 1.46 7.91 -2.39 -0.02 1.44 16 33 H 0.09 1.59 6.90 -2.39 -0.02 1.57 16 34 H 0.04 1.01 7.85 -2.39 -0.02 0.99 16 35 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.07 0.95 7.83 -2.39 -0.02 0.93 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.04 0.99 7.85 -2.39 -0.02 0.97 16 40 H 0.07 1.38 7.91 -2.39 -0.02 1.37 16 41 H 0.08 1.46 6.90 -2.39 -0.02 1.44 16 Total: -1.00 -60.16 317.62 3.74 -56.42 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.22 Total: 28.79 kcal Atomic # 6 Polarization: -46.81 SS G_CDS: 2.94 Total: -43.87 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -1.45 Total: -86.33 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -60.16 3.74 -56.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404533467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.253 kcal (2) G-P(sol) polarization free energy of solvation -60.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds