Wall clock time and date at job start Mon Mar 30 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52468 * 1 3 3 H 1.10431 * 107.99731 * 2 1 4 4 C 1.52668 * 111.27888 * 241.57603 * 2 1 3 5 5 N 1.45300 * 111.63397 * 314.83714 * 4 2 1 6 6 C 1.46908 * 111.02216 * 156.84438 * 5 4 2 7 7 C 1.53002 * 109.47419 * 66.63672 * 6 5 4 8 8 C 1.50699 * 109.47379 * 180.80542 * 7 6 5 9 9 H 1.08000 * 119.99789 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00193 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99781 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00300 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46934 * 89.99904 * 12 10 8 14 14 H 1.48505 * 109.47215 * 210.00000 * 12 10 8 15 15 H 1.48502 * 109.46933 * 329.99753 * 12 10 8 16 16 C 1.45504 * 115.91346 * 284.55351 * 5 4 2 17 17 C 1.52920 * 110.47838 * 76.65351 * 16 5 4 18 18 C 1.51362 * 109.12416 * 278.53539 * 17 16 5 19 19 C 1.39126 * 116.84436 * 242.63014 * 18 17 16 20 20 C 1.37966 * 120.32833 * 180.02562 * 19 18 17 21 21 C 1.38241 * 119.71572 * 0.02562 * 20 19 18 22 22 C 1.37919 * 119.81937 * 359.96627 * 21 20 19 23 23 C 1.36594 * 123.11618 * 62.65073 * 18 17 16 24 24 H 1.09000 * 109.46618 * 178.42588 * 1 2 3 25 25 H 1.08996 * 109.47517 * 298.42128 * 1 2 3 26 26 H 1.09000 * 109.47302 * 58.42903 * 1 2 3 27 27 H 1.09189 * 109.31295 * 194.14216 * 4 2 1 28 28 H 1.09218 * 109.27142 * 75.41159 * 4 2 1 29 29 H 1.09007 * 109.46736 * 306.64166 * 6 5 4 30 30 H 1.08990 * 109.47636 * 186.64280 * 6 5 4 31 31 H 1.09005 * 109.46579 * 60.80501 * 7 6 5 32 32 H 1.08997 * 109.47271 * 300.80789 * 7 6 5 33 33 H 0.96999 * 119.99891 * 180.02562 * 11 10 8 34 34 H 1.08970 * 109.17123 * 197.01083 * 16 5 4 35 35 H 1.08988 * 109.16367 * 316.37456 * 16 5 4 36 36 H 1.09779 * 108.80649 * 160.00214 * 17 16 5 37 37 H 1.08481 * 110.72639 * 41.09064 * 17 16 5 38 38 H 1.08072 * 119.35575 * 359.96249 * 19 18 17 39 39 H 1.07987 * 120.28566 * 180.02562 * 20 19 18 40 40 H 1.08017 * 119.92537 * 180.02562 * 21 20 19 41 41 H 1.08067 * 120.33626 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5247 0.0000 0.0000 3 1 1.8659 1.0503 0.0000 4 6 2.0787 -0.6771 -1.2511 5 7 1.3857 -1.9216 -1.5382 6 6 1.5088 -2.2779 -2.9580 7 6 2.9685 -2.6076 -3.2765 8 6 3.0982 -2.9539 -4.7374 9 1 2.2265 -2.9407 -5.3749 10 6 4.3293 -3.2887 -5.2600 11 7 5.3907 -3.3053 -4.4835 12 14 4.4899 -3.7187 -7.0707 13 1 4.7719 -2.4859 -7.8491 14 1 5.6028 -4.6849 -7.2532 15 1 3.2226 -4.3273 -7.5492 16 6 1.7289 -3.0513 -0.6878 17 6 1.0549 -2.9168 0.6783 18 6 1.8727 -1.9834 1.5449 19 6 2.4230 -2.5224 2.7035 20 6 3.1808 -1.7356 3.5462 21 6 3.3924 -0.4052 3.2357 22 6 2.8457 0.1262 2.0864 23 6 2.0812 -0.6692 1.2362 24 1 -0.3632 -1.0273 -0.0282 25 1 -0.3634 0.4891 0.9037 26 1 -0.3634 0.5380 -0.8755 27 1 3.1409 -0.8861 -1.1083 28 1 1.9676 -0.0044 -2.1043 29 1 1.1834 -1.4386 -3.5728 30 1 0.8856 -3.1465 -3.1700 31 1 3.2896 -3.4559 -2.6721 32 1 3.5937 -1.7436 -3.0511 33 1 6.2570 -3.5405 -4.8512 34 1 1.3975 -3.9727 -1.1659 35 1 2.8102 -3.0839 -0.5553 36 1 1.0229 -3.9047 1.1559 37 1 0.0370 -2.5574 0.5705 38 1 2.2502 -3.5632 2.9375 39 1 3.6080 -2.1548 4.4450 40 1 3.9855 0.2138 3.8929 41 1 3.0061 1.1650 1.8354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404704146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:38 Heat of formation + Delta-G solvation = 12.236681 kcal Electronic energy + Delta-G solvation = -19662.193722 eV Core-core repulsion = 16926.932768 eV Total energy + Delta-G solvation = -2735.260954 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.04505 -37.45726 -34.20722 -33.31288 -32.42310 -29.84516 -29.36616 -27.88823 -25.70045 -24.07304 -23.41529 -22.30530 -21.29731 -19.71847 -18.89418 -16.54477 -16.25091 -15.61813 -15.02797 -14.82084 -14.61487 -14.23705 -14.00081 -13.38143 -13.28397 -13.04615 -12.56916 -12.46474 -12.09478 -12.02584 -11.68821 -11.41246 -11.22233 -11.11649 -10.95357 -10.77295 -10.68081 -10.60586 -10.25700 -10.06890 -9.81604 -9.70329 -9.14093 -8.62690 -8.43009 -8.36103 -7.35585 -6.01203 -4.04568 1.50919 1.55230 3.30670 3.37038 3.40311 3.90824 4.42348 4.54878 4.81442 4.88263 5.06989 5.08973 5.31123 5.34251 5.46821 5.54239 5.59777 5.64487 5.70848 5.81324 5.86639 5.96027 6.07692 6.18789 6.19901 6.23454 6.33198 6.41646 6.43620 6.47053 6.61337 6.63598 6.73037 6.78038 6.90733 6.93608 7.17515 7.57822 7.64880 7.73387 8.01125 8.01581 8.42647 9.03167 9.59882 11.09701 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027995 B = 0.004846 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.931163 B = 5776.796858 C = 6054.086213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.048 4.048 3 H 0.069 0.931 4 C 0.081 3.919 5 N -0.561 5.561 6 C 0.066 3.934 7 C -0.008 4.008 8 C -0.520 4.520 9 H 0.056 0.944 10 C 0.057 3.943 11 N -0.895 5.895 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.273 1.273 16 C 0.077 3.923 17 C -0.082 4.082 18 C -0.066 4.066 19 C -0.123 4.123 20 C -0.128 4.128 21 C -0.129 4.129 22 C -0.122 4.122 23 C -0.064 4.064 24 H 0.073 0.927 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.015 0.985 32 H 0.015 0.985 33 H 0.260 0.740 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.636 4.874 14.362 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.067 4.067 3 H 0.087 0.913 4 C -0.047 4.047 5 N -0.285 5.285 6 C -0.060 4.060 7 C -0.046 4.046 8 C -0.558 4.558 9 H 0.074 0.926 10 C -0.144 4.144 11 N -0.534 5.534 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.198 1.198 16 C -0.051 4.051 17 C -0.119 4.119 18 C -0.066 4.066 19 C -0.141 4.141 20 C -0.146 4.146 21 C -0.147 4.147 22 C -0.140 4.140 23 C -0.064 4.064 24 H 0.092 0.908 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.888 4.926 14.458 17.191 hybrid contribution 1.353 -0.396 -1.069 1.769 sum -6.535 4.530 13.389 15.572 Atomic orbital electron populations 1.21544 0.93822 1.03234 1.00188 1.20388 0.96593 0.97941 0.91787 0.91267 1.21526 0.95747 0.91461 0.96005 1.59589 1.60200 1.03190 1.05475 1.22325 0.99166 0.99783 0.84767 1.19671 0.91254 0.96864 0.96835 1.21176 0.93833 1.46212 0.94620 0.92602 1.25026 0.95993 0.95555 0.97799 1.69975 0.99239 1.48909 1.35325 0.86604 0.77735 0.78257 0.85475 1.20671 1.21264 1.19814 1.21552 0.98162 0.93657 0.91715 1.20989 0.99092 0.97210 0.94614 1.19644 0.98164 0.93702 0.95122 1.21353 0.98473 0.99559 0.94668 1.21001 0.99568 0.94302 0.99699 1.20980 1.00608 0.95591 0.97487 1.21388 0.98215 0.99554 0.94800 1.19641 0.97416 0.93166 0.96140 0.90773 0.94074 0.92631 0.94688 0.90950 0.92152 0.92103 0.96632 0.96709 0.93041 0.90800 0.94513 0.91566 0.89548 0.86344 0.86545 0.86569 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.87 36.89 0.33 -1.35 16 2 C -0.05 -0.68 2.57 -91.98 -0.24 -0.91 16 3 H 0.07 0.89 7.63 -51.11 -0.39 0.50 16 4 C 0.08 1.39 4.08 -4.86 -0.02 1.37 16 5 N -0.56 -9.90 3.31 -237.23 -0.78 -10.68 16 6 C 0.07 1.36 5.05 -3.82 -0.02 1.34 16 7 C -0.01 -0.20 4.53 -27.88 -0.13 -0.33 16 8 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 9 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 12 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 16 C 0.08 1.32 4.34 -4.62 -0.02 1.30 16 17 C -0.08 -1.13 5.27 -27.60 -0.15 -1.28 16 18 C -0.07 -0.95 5.09 -104.56 -0.53 -1.49 16 19 C -0.12 -1.60 9.58 -39.35 -0.38 -1.98 16 20 C -0.13 -1.56 10.05 -39.68 -0.40 -1.95 16 21 C -0.13 -1.57 10.04 -39.70 -0.40 -1.97 16 22 C -0.12 -1.61 9.56 -39.31 -0.38 -1.98 16 23 C -0.06 -0.92 4.68 -104.59 -0.49 -1.41 16 24 H 0.07 1.01 4.78 -51.93 -0.25 0.76 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.03 0.69 7.30 -51.82 -0.38 0.31 16 28 H 0.07 1.24 7.66 -51.81 -0.40 0.85 16 29 H 0.06 1.23 7.86 -51.93 -0.41 0.82 16 30 H 0.06 1.23 7.94 -51.93 -0.41 0.82 16 31 H 0.02 0.43 7.10 -51.93 -0.37 0.06 16 32 H 0.01 0.41 7.07 -51.93 -0.37 0.04 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.07 1.26 7.69 -51.95 -0.40 0.86 16 35 H 0.04 0.72 7.33 -51.94 -0.38 0.34 16 36 H 0.07 0.80 7.66 -51.49 -0.39 0.40 16 37 H 0.09 1.16 5.83 -52.22 -0.30 0.85 16 38 H 0.12 1.33 7.73 -52.45 -0.41 0.92 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 41 H 0.12 1.34 7.67 -52.45 -0.40 0.94 16 LS Contribution 315.42 15.07 4.75 4.75 Total: -1.00 -30.21 315.42 -10.03 -40.24 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.49 Total: -0.50 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -3.22 Total: -24.07 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.05 Total: -37.11 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.21 -10.03 -40.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404704146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.476 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds