Wall clock time and date at job start Mon Mar 30 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52468 * 1 3 3 H 1.10431 * 107.99731 * 2 1 4 4 C 1.52668 * 111.27888 * 241.57603 * 2 1 3 5 5 N 1.45300 * 111.63397 * 314.83714 * 4 2 1 6 6 C 1.46908 * 111.02216 * 156.84438 * 5 4 2 7 7 C 1.53002 * 109.47419 * 66.63672 * 6 5 4 8 8 C 1.50699 * 109.47379 * 180.80542 * 7 6 5 9 9 H 1.08000 * 119.99789 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00193 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99781 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00300 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46934 * 89.99904 * 12 10 8 14 14 H 1.48505 * 109.47215 * 210.00000 * 12 10 8 15 15 H 1.48502 * 109.46933 * 329.99753 * 12 10 8 16 16 C 1.45504 * 115.91346 * 284.55351 * 5 4 2 17 17 C 1.52920 * 110.47838 * 76.65351 * 16 5 4 18 18 C 1.51362 * 109.12416 * 278.53539 * 17 16 5 19 19 C 1.39126 * 116.84436 * 242.63014 * 18 17 16 20 20 C 1.37966 * 120.32833 * 180.02562 * 19 18 17 21 21 C 1.38241 * 119.71572 * 0.02562 * 20 19 18 22 22 C 1.37919 * 119.81937 * 359.96627 * 21 20 19 23 23 C 1.36594 * 123.11618 * 62.65073 * 18 17 16 24 24 H 1.09000 * 109.46618 * 178.42588 * 1 2 3 25 25 H 1.08996 * 109.47517 * 298.42128 * 1 2 3 26 26 H 1.09000 * 109.47302 * 58.42903 * 1 2 3 27 27 H 1.09189 * 109.31295 * 194.14216 * 4 2 1 28 28 H 1.09218 * 109.27142 * 75.41159 * 4 2 1 29 29 H 1.09007 * 109.46736 * 306.64166 * 6 5 4 30 30 H 1.08990 * 109.47636 * 186.64280 * 6 5 4 31 31 H 1.09005 * 109.46579 * 60.80501 * 7 6 5 32 32 H 1.08997 * 109.47271 * 300.80789 * 7 6 5 33 33 H 0.96999 * 119.99891 * 180.02562 * 11 10 8 34 34 H 1.08970 * 109.17123 * 197.01083 * 16 5 4 35 35 H 1.08988 * 109.16367 * 316.37456 * 16 5 4 36 36 H 1.09779 * 108.80649 * 160.00214 * 17 16 5 37 37 H 1.08481 * 110.72639 * 41.09064 * 17 16 5 38 38 H 1.08072 * 119.35575 * 359.96249 * 19 18 17 39 39 H 1.07987 * 120.28566 * 180.02562 * 20 19 18 40 40 H 1.08017 * 119.92537 * 180.02562 * 21 20 19 41 41 H 1.08067 * 120.33626 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5247 0.0000 0.0000 3 1 1.8659 1.0503 0.0000 4 6 2.0787 -0.6771 -1.2511 5 7 1.3857 -1.9216 -1.5382 6 6 1.5088 -2.2779 -2.9580 7 6 2.9685 -2.6076 -3.2765 8 6 3.0982 -2.9539 -4.7374 9 1 2.2265 -2.9407 -5.3749 10 6 4.3293 -3.2887 -5.2600 11 7 5.3907 -3.3053 -4.4835 12 14 4.4899 -3.7187 -7.0707 13 1 4.7719 -2.4859 -7.8491 14 1 5.6028 -4.6849 -7.2532 15 1 3.2226 -4.3273 -7.5492 16 6 1.7289 -3.0513 -0.6878 17 6 1.0549 -2.9168 0.6783 18 6 1.8727 -1.9834 1.5449 19 6 2.4230 -2.5224 2.7035 20 6 3.1808 -1.7356 3.5462 21 6 3.3924 -0.4052 3.2357 22 6 2.8457 0.1262 2.0864 23 6 2.0812 -0.6692 1.2362 24 1 -0.3632 -1.0273 -0.0282 25 1 -0.3634 0.4891 0.9037 26 1 -0.3634 0.5380 -0.8755 27 1 3.1409 -0.8861 -1.1083 28 1 1.9676 -0.0044 -2.1043 29 1 1.1834 -1.4386 -3.5728 30 1 0.8856 -3.1465 -3.1700 31 1 3.2896 -3.4559 -2.6721 32 1 3.5937 -1.7436 -3.0511 33 1 6.2570 -3.5405 -4.8512 34 1 1.3975 -3.9727 -1.1659 35 1 2.8102 -3.0839 -0.5553 36 1 1.0229 -3.9047 1.1559 37 1 0.0370 -2.5574 0.5705 38 1 2.2502 -3.5632 2.9375 39 1 3.6080 -2.1548 4.4450 40 1 3.9855 0.2138 3.8929 41 1 3.0061 1.1650 1.8354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404704146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:37 Heat of formation + Delta-G solvation = -3.513486 kcal Electronic energy + Delta-G solvation = -19662.876701 eV Core-core repulsion = 16926.932768 eV Total energy + Delta-G solvation = -2735.943933 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17938 -38.80316 -35.70464 -34.81407 -34.00395 -31.14423 -30.88122 -29.13982 -27.29716 -25.56800 -24.89661 -23.35802 -22.91353 -20.96889 -20.20079 -18.64216 -17.37744 -16.91100 -16.55728 -16.25984 -16.06858 -15.63460 -15.27904 -14.81937 -14.44136 -14.31375 -14.20981 -13.88307 -13.57211 -13.25483 -13.18451 -12.84132 -12.80539 -12.57585 -12.39022 -12.29812 -12.11049 -11.84427 -11.74152 -11.65529 -11.45339 -11.23524 -11.12242 -10.58375 -9.62555 -9.49633 -8.95924 -8.21995 -6.35330 0.51254 0.53957 1.38064 1.39467 1.50843 2.38355 2.89775 3.06627 3.10224 3.69105 3.81249 4.04691 4.11751 4.23581 4.32014 4.39330 4.40467 4.46129 4.50079 4.61565 4.70646 4.75860 4.78289 4.84368 4.93973 4.98923 5.01744 5.14807 5.17014 5.19923 5.29680 5.31251 5.46136 5.57004 5.60570 5.64935 5.71304 5.74656 5.86085 6.03631 6.19379 6.37258 6.47255 6.83534 7.34792 8.88695 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027995 B = 0.004846 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.931163 B = 5776.796858 C = 6054.086213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.042 4.042 3 H 0.083 0.917 4 C 0.085 3.915 5 N -0.545 5.545 6 C 0.079 3.921 7 C 0.004 3.996 8 C -0.540 4.540 9 H 0.065 0.935 10 C -0.001 4.001 11 N -0.937 5.937 12 Si 0.966 3.034 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.260 1.260 16 C 0.080 3.920 17 C -0.071 4.071 18 C -0.088 4.088 19 C -0.133 4.133 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.134 4.134 23 C -0.084 4.084 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.059 0.941 27 H -0.002 1.002 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.068 0.932 31 H -0.014 1.014 32 H -0.017 1.017 33 H 0.262 0.738 34 H 0.071 0.929 35 H 0.001 0.999 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.135 0.865 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.760 5.137 14.857 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.061 4.061 3 H 0.101 0.899 4 C -0.044 4.044 5 N -0.268 5.268 6 C -0.048 4.048 7 C -0.035 4.035 8 C -0.579 4.579 9 H 0.083 0.917 10 C -0.198 4.198 11 N -0.577 5.577 12 Si 0.791 3.209 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.184 1.184 16 C -0.048 4.048 17 C -0.108 4.108 18 C -0.088 4.088 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.150 4.150 22 C -0.152 4.152 23 C -0.084 4.084 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.016 0.984 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.004 0.996 32 H 0.001 0.999 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.019 0.981 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.034 5.197 14.967 18.238 hybrid contribution 1.771 -0.469 -1.155 2.165 sum -7.263 4.728 13.812 16.306 Atomic orbital electron populations 1.21491 0.92466 1.03004 1.01160 1.20332 0.97592 0.98134 0.90012 0.89858 1.21553 0.93810 0.91257 0.97749 1.59726 1.59577 1.03598 1.03870 1.22115 0.95567 1.00243 0.86902 1.19523 0.94100 0.94224 0.95609 1.21647 0.94367 1.46054 0.95813 0.91699 1.26014 0.95553 0.95257 1.03020 1.70127 0.99887 1.49933 1.37744 0.85425 0.78165 0.78211 0.79126 1.19768 1.20948 1.18359 1.21580 0.96333 0.93284 0.93615 1.20895 0.99020 0.98555 0.92367 1.19801 0.99073 0.93916 0.95980 1.21632 0.98410 1.00612 0.94437 1.21375 0.98876 0.94335 1.00322 1.21348 1.00187 0.96064 0.97370 1.21649 0.98068 1.00333 0.95139 1.19788 0.98406 0.93679 0.96567 0.91529 0.92511 0.92228 0.98391 0.91346 0.91561 0.91363 0.99607 0.99874 0.92909 0.91059 0.98089 0.89534 0.88622 0.84710 0.83985 0.84059 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 8.87 71.81 0.64 -2.36 16 2 C -0.04 -1.16 2.57 -11.67 -0.03 -1.19 16 3 H 0.08 2.06 7.63 -1.62 -0.01 2.04 16 4 C 0.08 3.00 4.08 86.49 0.35 3.35 16 5 N -0.54 -19.64 3.31 -904.46 -2.99 -22.63 16 6 C 0.08 3.32 5.05 86.30 0.44 3.76 16 7 C 0.00 0.21 4.53 29.85 0.14 0.35 16 8 C -0.54 -31.04 9.11 25.60 0.23 -30.80 16 9 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 10 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 11 N -0.94 -58.45 13.29 21.45 0.28 -58.17 16 12 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 14 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 15 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 16 C 0.08 2.81 4.34 86.54 0.38 3.18 16 17 C -0.07 -1.93 5.27 30.03 0.16 -1.77 16 18 C -0.09 -2.47 5.09 -19.83 -0.10 -2.57 16 19 C -0.13 -3.30 9.58 22.42 0.21 -3.09 16 20 C -0.13 -2.93 10.05 22.21 0.22 -2.71 16 21 C -0.13 -2.96 10.04 22.19 0.22 -2.74 16 22 C -0.13 -3.38 9.56 22.45 0.21 -3.16 16 23 C -0.08 -2.39 4.68 -19.84 -0.09 -2.49 16 24 H 0.07 1.71 4.78 -2.39 -0.01 1.70 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 27 H 0.00 -0.10 7.30 -2.29 -0.02 -0.11 16 28 H 0.07 2.43 7.66 -2.27 -0.02 2.41 16 29 H 0.07 2.71 7.86 -2.38 -0.02 2.69 16 30 H 0.07 2.77 7.94 -2.39 -0.02 2.75 16 31 H -0.01 -0.85 7.10 -2.38 -0.02 -0.87 16 32 H -0.02 -1.02 7.07 -2.39 -0.02 -1.03 16 33 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.07 2.49 7.69 -2.40 -0.02 2.47 16 35 H 0.00 0.03 7.33 -2.39 -0.02 0.01 16 36 H 0.09 1.97 7.66 -1.97 -0.02 1.96 16 37 H 0.10 2.43 5.83 -2.66 -0.02 2.41 16 38 H 0.14 2.78 7.73 -2.87 -0.02 2.75 16 39 H 0.14 2.37 8.06 -2.92 -0.02 2.34 16 40 H 0.14 2.38 8.06 -2.90 -0.02 2.36 16 41 H 0.13 2.82 7.67 -2.88 -0.02 2.80 16 Total: -1.00 -66.63 315.42 3.77 -62.86 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 1.00 Total: 13.03 kcal Atomic # 6 Polarization: -45.27 SS G_CDS: 3.44 Total: -41.82 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -2.70 Total: -80.79 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -66.63 3.77 -62.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404704146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.348 kcal (2) G-P(sol) polarization free energy of solvation -66.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds