Wall clock time and date at job start Mon Mar 30 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.69771 * 2 1 4 4 C 1.53203 * 109.70071 * 120.56332 * 2 1 3 5 5 N 1.45372 * 110.85871 * 204.53752 * 4 2 1 6 6 C 1.46899 * 111.00024 * 58.77329 * 5 4 2 7 7 C 1.53005 * 109.47052 * 68.21041 * 6 5 4 8 8 C 1.50700 * 109.46527 * 180.02562 * 7 6 5 9 9 H 1.07993 * 120.00730 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99428 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00423 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99901 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47101 * 0.02562 * 12 10 8 14 14 H 1.48491 * 109.47223 * 119.99839 * 12 10 8 15 15 H 1.48501 * 109.47017 * 240.00146 * 12 10 8 16 16 C 1.45372 * 116.68013 * 290.26995 * 5 4 2 17 17 C 1.53203 * 110.84746 * 69.69553 * 16 5 4 18 18 C 1.51469 * 108.28759 * 275.23538 * 17 16 5 19 19 C 1.38271 * 119.81064 * 249.42687 * 18 17 16 20 20 C 1.38315 * 119.61323 * 180.02562 * 19 18 17 21 21 C 1.38258 * 120.08080 * 0.02562 * 20 19 18 22 22 C 1.38314 * 120.07342 * 359.97438 * 21 20 19 23 23 C 1.37316 * 119.88544 * 69.46773 * 18 17 16 24 24 H 1.08999 * 109.47161 * 299.43405 * 1 2 3 25 25 H 1.08996 * 109.47385 * 59.43345 * 1 2 3 26 26 H 1.08997 * 109.47399 * 179.43730 * 1 2 3 27 27 H 1.08998 * 109.20137 * 84.18293 * 4 2 1 28 28 H 1.09002 * 109.16233 * 324.87158 * 4 2 1 29 29 H 1.08998 * 109.46935 * 188.20897 * 6 5 4 30 30 H 1.08996 * 109.47098 * 308.21047 * 6 5 4 31 31 H 1.08998 * 109.47133 * 299.99735 * 7 6 5 32 32 H 1.08998 * 109.47246 * 60.00589 * 7 6 5 33 33 H 0.96996 * 120.00231 * 179.97438 * 11 10 8 34 34 H 1.08998 * 109.20450 * 190.04463 * 16 5 4 35 35 H 1.08998 * 109.20499 * 309.34169 * 16 5 4 36 36 H 1.09001 * 109.72524 * 155.52983 * 17 16 5 37 37 H 1.08995 * 109.67947 * 34.92065 * 17 16 5 38 38 H 1.08008 * 120.19479 * 0.03157 * 19 18 17 39 39 H 1.08003 * 119.95834 * 180.02562 * 20 19 18 40 40 H 1.07999 * 119.96108 * 179.97438 * 21 20 19 41 41 H 1.07996 * 120.19840 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0261 0.0000 4 6 2.0464 -0.7334 1.2420 5 7 3.3844 -0.2836 1.5897 6 6 3.4032 1.1624 1.8475 7 6 2.6245 1.4620 3.1301 8 6 2.6434 2.9456 3.3941 9 1 3.1594 3.6084 2.7154 10 6 2.0017 3.4567 4.5023 11 7 1.3728 2.6497 5.3286 12 14 2.0256 5.2956 4.8301 13 1 2.7942 5.9794 3.7591 14 1 0.6340 5.8134 4.8477 15 1 2.6673 5.5560 6.1438 16 6 4.4570 -0.6658 0.6860 17 6 4.3372 0.0783 -0.6478 18 6 3.3790 -0.6886 -1.5355 19 6 3.8558 -1.3478 -2.6536 20 6 2.9772 -2.0465 -3.4617 21 6 1.6304 -2.0835 -3.1513 22 6 1.1587 -1.4224 -2.0318 23 6 2.0414 -0.7257 -1.2273 24 1 -0.3633 0.5050 0.8950 25 1 -0.3634 0.5226 -0.8848 26 1 -0.3634 -1.0276 -0.0101 27 1 2.0691 -1.8047 1.0421 28 1 1.3742 -0.5389 2.0777 29 1 4.4340 1.4977 1.9616 30 1 2.9411 1.6867 1.0111 31 1 1.5937 1.1267 3.0160 32 1 3.0867 0.9379 3.9666 33 1 0.9217 3.0093 6.1084 34 1 5.4157 -0.4256 1.1456 35 1 4.4067 -1.7392 0.5035 36 1 5.3150 0.1358 -1.1261 37 1 3.9527 1.0833 -0.4743 38 1 4.9083 -1.3174 -2.8945 39 1 3.3437 -2.5637 -4.3361 40 1 0.9460 -2.6293 -3.7839 41 1 0.1071 -1.4504 -1.7872 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404704148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:40 Heat of formation + Delta-G solvation = 17.699244 kcal Electronic energy + Delta-G solvation = -19773.373613 eV Core-core repulsion = 17038.349533 eV Total energy + Delta-G solvation = -2735.024080 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.39129 -37.55342 -34.25995 -33.40546 -32.21009 -29.88242 -29.49995 -27.81559 -25.56767 -24.58400 -23.55719 -22.01871 -21.26024 -19.84693 -18.87459 -16.67524 -16.40461 -15.68188 -15.18882 -14.67881 -14.58111 -14.40227 -14.15187 -13.72712 -13.57533 -12.67974 -12.60626 -12.28013 -12.13606 -12.09818 -11.80632 -11.56522 -11.29737 -11.01223 -10.93856 -10.91196 -10.62908 -10.50489 -10.47715 -10.24612 -9.70811 -9.37011 -9.06504 -8.73663 -8.71902 -8.30494 -7.34338 -5.97537 -3.99505 1.44845 1.46392 3.32002 3.39707 3.43327 3.83223 4.41525 4.58549 4.77226 4.83578 4.99896 5.04086 5.29850 5.37081 5.38354 5.38945 5.42989 5.53191 5.66407 5.68957 5.77030 5.85706 5.97840 6.08775 6.12871 6.13954 6.18853 6.28115 6.36676 6.42225 6.53498 6.55831 6.61146 6.74125 6.85599 7.04813 7.09680 7.57652 7.73063 7.87384 8.01842 8.12425 8.46845 9.08323 9.64114 11.13786 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.032340 B = 0.004928 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.583009 B = 5680.571109 C = 5991.934682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.094 0.906 4 C 0.084 3.916 5 N -0.558 5.558 6 C 0.062 3.938 7 C 0.028 3.972 8 C -0.520 4.520 9 H 0.053 0.947 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.889 3.111 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.078 3.922 17 C -0.125 4.125 18 C -0.077 4.077 19 C -0.119 4.119 20 C -0.131 4.131 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.065 4.065 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.017 0.983 32 H 0.023 0.977 33 H 0.259 0.741 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 -9.063 -15.325 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.112 0.888 4 C -0.044 4.044 5 N -0.280 5.280 6 C -0.064 4.064 7 C -0.009 4.009 8 C -0.559 4.559 9 H 0.071 0.929 10 C -0.142 4.142 11 N -0.532 5.532 12 Si 0.717 3.283 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.051 4.051 17 C -0.164 4.164 18 C -0.077 4.077 19 C -0.137 4.137 20 C -0.149 4.149 21 C -0.146 4.146 22 C -0.138 4.138 23 C -0.065 4.065 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.834 -9.308 -14.750 17.538 hybrid contribution -0.210 1.371 -0.662 1.537 sum 1.624 -7.937 -15.412 17.411 Atomic orbital electron populations 1.21810 0.94509 1.01438 1.02236 1.21190 0.96435 1.00775 0.93456 0.88834 1.21797 0.89816 0.97748 0.95036 1.59698 1.03848 1.17366 1.47052 1.22364 1.00635 0.83890 0.99500 1.19090 0.94983 0.95714 0.91109 1.21235 1.33254 0.92770 1.08616 0.92866 1.24974 0.95470 0.97618 0.96156 1.69977 1.34942 1.34371 1.13909 0.86590 0.77674 0.85899 0.78146 1.19814 1.21086 1.21024 1.21747 0.95260 0.98905 0.89168 1.21658 0.97894 1.00022 0.96847 1.19769 0.94006 0.98275 0.95632 1.21046 0.99358 0.98323 0.94968 1.21066 0.93694 1.00308 0.99792 1.21103 0.95580 1.00312 0.97647 1.21220 0.99867 0.97821 0.94918 1.19857 0.92831 0.97467 0.96392 0.91468 0.92937 0.92675 0.92137 0.89356 0.92379 0.95336 0.96443 0.95891 0.93113 0.90735 0.91734 0.91128 0.89987 0.86356 0.86636 0.86593 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 7.81 37.16 0.29 -1.68 16 2 C -0.10 -1.53 2.34 -91.29 -0.21 -1.74 16 3 H 0.09 1.64 4.86 -51.93 -0.25 1.39 16 4 C 0.08 1.42 4.83 -4.54 -0.02 1.40 16 5 N -0.56 -10.01 4.46 -236.92 -1.06 -11.07 16 6 C 0.06 1.28 3.88 -3.82 -0.01 1.26 16 7 C 0.03 0.73 4.93 -27.88 -0.14 0.59 16 8 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 9 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 12 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 C 0.08 1.16 5.51 -4.54 -0.03 1.14 16 17 C -0.13 -1.73 5.38 -27.40 -0.15 -1.88 16 18 C -0.08 -1.07 5.01 -104.57 -0.52 -1.59 16 19 C -0.12 -1.46 9.70 -39.54 -0.38 -1.84 16 20 C -0.13 -1.48 10.05 -39.55 -0.40 -1.88 16 21 C -0.13 -1.48 10.05 -39.55 -0.40 -1.88 16 22 C -0.12 -1.54 9.07 -39.54 -0.36 -1.90 16 23 C -0.07 -0.94 4.97 -104.56 -0.52 -1.46 16 24 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 25 H 0.05 0.67 8.00 -51.93 -0.42 0.25 16 26 H 0.05 0.67 7.04 -51.93 -0.37 0.31 16 27 H 0.06 0.96 7.86 -51.93 -0.41 0.56 16 28 H 0.09 1.65 6.32 -51.93 -0.33 1.32 16 29 H 0.06 1.19 7.89 -51.93 -0.41 0.78 16 30 H 0.03 0.58 4.63 -51.93 -0.24 0.34 16 31 H 0.02 0.47 6.64 -51.93 -0.35 0.12 16 32 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 35 H 0.06 0.93 7.86 -51.93 -0.41 0.52 16 36 H 0.07 0.84 7.93 -51.93 -0.41 0.42 16 37 H 0.08 1.27 5.42 -51.93 -0.28 0.99 16 38 H 0.12 1.22 7.98 -52.48 -0.42 0.80 16 39 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.13 1.43 5.96 -52.49 -0.31 1.12 16 LS Contribution 311.60 15.07 4.70 4.70 Total: -1.00 -29.68 311.60 -10.15 -39.83 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.25 Total: 0.66 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -3.26 Total: -24.72 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.32 Total: -37.02 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.68 -10.15 -39.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404704148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.531 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds