Wall clock time and date at job start Mon Mar 30 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.69771 * 2 1 4 4 C 1.53203 * 109.70071 * 120.56332 * 2 1 3 5 5 N 1.45372 * 110.85871 * 204.53752 * 4 2 1 6 6 C 1.46899 * 111.00024 * 58.77329 * 5 4 2 7 7 C 1.53005 * 109.47052 * 68.21041 * 6 5 4 8 8 C 1.50700 * 109.46527 * 180.02562 * 7 6 5 9 9 H 1.07993 * 120.00730 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99428 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00423 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99901 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47101 * 0.02562 * 12 10 8 14 14 H 1.48491 * 109.47223 * 119.99839 * 12 10 8 15 15 H 1.48501 * 109.47017 * 240.00146 * 12 10 8 16 16 C 1.45372 * 116.68013 * 290.26995 * 5 4 2 17 17 C 1.53203 * 110.84746 * 69.69553 * 16 5 4 18 18 C 1.51469 * 108.28759 * 275.23538 * 17 16 5 19 19 C 1.38271 * 119.81064 * 249.42687 * 18 17 16 20 20 C 1.38315 * 119.61323 * 180.02562 * 19 18 17 21 21 C 1.38258 * 120.08080 * 0.02562 * 20 19 18 22 22 C 1.38314 * 120.07342 * 359.97438 * 21 20 19 23 23 C 1.37316 * 119.88544 * 69.46773 * 18 17 16 24 24 H 1.08999 * 109.47161 * 299.43405 * 1 2 3 25 25 H 1.08996 * 109.47385 * 59.43345 * 1 2 3 26 26 H 1.08997 * 109.47399 * 179.43730 * 1 2 3 27 27 H 1.08998 * 109.20137 * 84.18293 * 4 2 1 28 28 H 1.09002 * 109.16233 * 324.87158 * 4 2 1 29 29 H 1.08998 * 109.46935 * 188.20897 * 6 5 4 30 30 H 1.08996 * 109.47098 * 308.21047 * 6 5 4 31 31 H 1.08998 * 109.47133 * 299.99735 * 7 6 5 32 32 H 1.08998 * 109.47246 * 60.00589 * 7 6 5 33 33 H 0.96996 * 120.00231 * 179.97438 * 11 10 8 34 34 H 1.08998 * 109.20450 * 190.04463 * 16 5 4 35 35 H 1.08998 * 109.20499 * 309.34169 * 16 5 4 36 36 H 1.09001 * 109.72524 * 155.52983 * 17 16 5 37 37 H 1.08995 * 109.67947 * 34.92065 * 17 16 5 38 38 H 1.08008 * 120.19479 * 0.03157 * 19 18 17 39 39 H 1.08003 * 119.95834 * 180.02562 * 20 19 18 40 40 H 1.07999 * 119.96108 * 179.97438 * 21 20 19 41 41 H 1.07996 * 120.19840 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0261 0.0000 4 6 2.0464 -0.7334 1.2420 5 7 3.3844 -0.2836 1.5897 6 6 3.4032 1.1624 1.8475 7 6 2.6245 1.4620 3.1301 8 6 2.6434 2.9456 3.3941 9 1 3.1594 3.6084 2.7154 10 6 2.0017 3.4567 4.5023 11 7 1.3728 2.6497 5.3286 12 14 2.0256 5.2956 4.8301 13 1 2.7942 5.9794 3.7591 14 1 0.6340 5.8134 4.8477 15 1 2.6673 5.5560 6.1438 16 6 4.4570 -0.6658 0.6860 17 6 4.3372 0.0783 -0.6478 18 6 3.3790 -0.6886 -1.5355 19 6 3.8558 -1.3478 -2.6536 20 6 2.9772 -2.0465 -3.4617 21 6 1.6304 -2.0835 -3.1513 22 6 1.1587 -1.4224 -2.0318 23 6 2.0414 -0.7257 -1.2273 24 1 -0.3633 0.5050 0.8950 25 1 -0.3634 0.5226 -0.8848 26 1 -0.3634 -1.0276 -0.0101 27 1 2.0691 -1.8047 1.0421 28 1 1.3742 -0.5389 2.0777 29 1 4.4340 1.4977 1.9616 30 1 2.9411 1.6867 1.0111 31 1 1.5937 1.1267 3.0160 32 1 3.0867 0.9379 3.9666 33 1 0.9217 3.0093 6.1084 34 1 5.4157 -0.4256 1.1456 35 1 4.4067 -1.7392 0.5035 36 1 5.3150 0.1358 -1.1261 37 1 3.9527 1.0833 -0.4743 38 1 4.9083 -1.3174 -2.8945 39 1 3.3437 -2.5637 -4.3361 40 1 0.9460 -2.6293 -3.7839 41 1 0.1071 -1.4504 -1.7872 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404704148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:40 Heat of formation + Delta-G solvation = 1.599556 kcal Electronic energy + Delta-G solvation = -19774.071748 eV Core-core repulsion = 17038.349533 eV Total energy + Delta-G solvation = -2735.722215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.51985 -38.77918 -35.48565 -35.27470 -33.61951 -31.43246 -30.75457 -28.99278 -27.19905 -26.07995 -24.65541 -23.66266 -22.47306 -20.94355 -20.30057 -18.57752 -17.67339 -16.94849 -16.68326 -16.24488 -15.91064 -15.64740 -15.35899 -15.04315 -14.64261 -14.25162 -13.92818 -13.83442 -13.46581 -13.36429 -13.09168 -12.92150 -12.82269 -12.67762 -12.45441 -12.24710 -12.16410 -11.92850 -11.65280 -11.60557 -11.36901 -11.21991 -11.14758 -10.50729 -9.79025 -9.66050 -8.71072 -8.17560 -6.28115 0.50141 0.52103 1.40439 1.40716 1.53717 2.41473 2.87989 3.14346 3.16106 3.64548 3.81893 4.02247 4.08316 4.15756 4.20494 4.33121 4.34274 4.41096 4.48888 4.53411 4.61965 4.68589 4.77251 4.83117 4.87442 4.93213 5.03703 5.09395 5.17414 5.18735 5.23395 5.27437 5.36154 5.51278 5.64083 5.66711 5.73287 5.82747 5.84934 6.16692 6.17226 6.39498 6.57820 6.89647 7.40721 8.94686 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.032340 B = 0.004928 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.583009 B = 5680.571109 C = 5991.934682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.067 0.933 4 C 0.089 3.911 5 N -0.571 5.571 6 C 0.083 3.917 7 C 0.038 3.962 8 C -0.540 4.540 9 H 0.058 0.942 10 C 0.003 3.997 11 N -0.931 5.931 12 Si 0.962 3.038 13 H -0.262 1.262 14 H -0.279 1.279 15 H -0.278 1.278 16 C 0.079 3.921 17 C -0.118 4.118 18 C -0.094 4.094 19 C -0.122 4.122 20 C -0.129 4.129 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.085 4.085 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.031 0.969 31 H -0.005 1.005 32 H -0.012 1.012 33 H 0.263 0.737 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.466 -9.349 -17.714 20.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.039 4.039 5 N -0.293 5.293 6 C -0.044 4.044 7 C 0.001 3.999 8 C -0.579 4.579 9 H 0.076 0.924 10 C -0.194 4.194 11 N -0.571 5.571 12 Si 0.787 3.213 13 H -0.186 1.186 14 H -0.204 1.204 15 H -0.204 1.204 16 C -0.049 4.049 17 C -0.157 4.157 18 C -0.094 4.094 19 C -0.140 4.140 20 C -0.146 4.146 21 C -0.146 4.146 22 C -0.146 4.146 23 C -0.085 4.085 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.013 0.987 32 H 0.007 0.993 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.488 -9.602 -17.157 19.818 hybrid contribution -0.414 1.364 0.041 1.426 sum 2.074 -8.239 -17.116 19.108 Atomic orbital electron populations 1.21767 0.93576 1.02473 1.01675 1.20983 0.97205 0.99219 0.93687 0.91477 1.21684 0.88918 0.98482 0.94807 1.59573 1.05181 1.15405 1.49123 1.21945 0.99528 0.85993 0.96915 1.18908 0.94100 0.94511 0.92427 1.21640 1.33315 0.93943 1.08954 0.92400 1.25907 0.94882 1.02809 0.95851 1.70113 1.35744 1.36753 1.14497 0.85448 0.77979 0.79636 0.78271 1.18639 1.20433 1.20393 1.21798 0.94121 0.99549 0.89394 1.21541 0.99169 0.98604 0.96349 1.19858 0.93785 0.99189 0.96607 1.21320 1.00708 0.97728 0.94232 1.21459 0.93494 0.99458 1.00232 1.21456 0.96369 0.99632 0.97186 1.21403 1.00214 0.97767 0.95259 1.19790 0.93626 0.98698 0.96358 0.93681 0.91696 0.90869 0.91017 0.92365 0.92259 0.95161 0.98712 0.99329 0.92861 0.90117 0.90781 0.88784 0.92107 0.84327 0.83776 0.83964 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 7.81 71.98 0.56 -3.31 16 2 C -0.09 -2.88 2.34 -11.23 -0.03 -2.91 16 3 H 0.07 2.46 4.86 -2.39 -0.01 2.45 16 4 C 0.09 3.13 4.83 86.66 0.42 3.54 16 5 N -0.57 -21.06 4.46 -903.49 -4.03 -25.08 16 6 C 0.08 3.55 3.88 86.31 0.34 3.88 16 7 C 0.04 2.06 4.93 29.85 0.15 2.20 16 8 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 9 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 10 C 0.00 0.20 5.46 84.66 0.46 0.66 16 11 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 12 Si 0.96 44.67 29.54 68.60 2.03 46.69 16 13 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 C 0.08 2.31 5.51 86.66 0.48 2.79 16 17 C -0.12 -3.13 5.38 30.16 0.16 -2.97 16 18 C -0.09 -2.47 5.01 -19.83 -0.10 -2.57 16 19 C -0.12 -2.60 9.70 22.30 0.22 -2.39 16 20 C -0.13 -2.42 10.05 22.29 0.22 -2.19 16 21 C -0.13 -2.52 10.05 22.29 0.22 -2.30 16 22 C -0.13 -3.02 9.07 22.30 0.20 -2.82 16 23 C -0.08 -2.34 4.97 -19.83 -0.10 -2.44 16 24 H 0.04 1.44 8.12 -2.39 -0.02 1.42 16 25 H 0.06 1.64 8.00 -2.39 -0.02 1.62 16 26 H 0.07 1.76 7.04 -2.39 -0.02 1.75 16 27 H 0.07 2.31 7.86 -2.39 -0.02 2.30 16 28 H 0.06 2.35 6.32 -2.39 -0.02 2.33 16 29 H 0.06 2.48 7.89 -2.39 -0.02 2.47 16 30 H 0.03 1.30 4.63 -2.39 -0.01 1.29 16 31 H -0.01 -0.31 6.64 -2.39 -0.02 -0.33 16 32 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 33 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.08 2.24 8.08 -2.39 -0.02 2.22 16 35 H 0.07 2.04 7.86 -2.39 -0.02 2.02 16 36 H 0.09 2.02 7.93 -2.39 -0.02 2.00 16 37 H 0.06 1.88 5.42 -2.39 -0.01 1.87 16 38 H 0.14 2.32 7.98 -2.91 -0.02 2.30 16 39 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.14 2.80 5.96 -2.91 -0.02 2.79 16 Total: -1.00 -65.36 311.60 2.73 -62.63 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 1.00 Total: 14.42 kcal Atomic # 6 Polarization: -45.10 SS G_CDS: 3.44 Total: -41.66 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -3.74 Total: -82.09 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -65.36 2.73 -62.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404704148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.229 kcal (2) G-P(sol) polarization free energy of solvation -65.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds