Wall clock time and date at job start Mon Mar 30 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46927 * 2 1 4 4 C 1.50696 * 109.47370 * 240.00567 * 2 1 3 5 5 H 1.08007 * 119.99887 * 245.23831 * 4 2 1 6 6 C 1.37872 * 120.00276 * 65.23215 * 4 2 1 7 7 N 1.31514 * 120.00417 * 195.96423 * 6 4 2 8 8 Si 1.86796 * 120.00048 * 15.96589 * 6 4 2 9 9 H 1.48501 * 109.47054 * 94.90217 * 8 6 4 10 10 H 1.48502 * 109.47288 * 214.90119 * 8 6 4 11 11 H 1.48505 * 109.47311 * 334.90308 * 8 6 4 12 12 N 1.46900 * 109.46965 * 120.00166 * 2 1 3 13 13 C 1.45371 * 110.99755 * 63.13267 * 12 2 1 14 14 C 1.53205 * 110.85188 * 198.19484 * 13 12 2 15 15 C 1.51467 * 108.29090 * 275.23274 * 14 13 12 16 16 C 1.38280 * 119.81377 * 249.47207 * 15 14 13 17 17 C 1.38311 * 119.61331 * 180.02562 * 16 15 14 18 18 C 1.38260 * 120.07910 * 359.96295 * 17 16 15 19 19 C 1.38310 * 120.07510 * 0.02562 * 18 17 16 20 20 C 1.37308 * 119.88055 * 69.44816 * 15 14 13 21 21 C 1.51472 * 119.87004 * 359.97438 * 20 15 14 22 22 H 1.08999 * 109.70150 * 170.88293 * 21 20 15 23 23 C 1.53002 * 109.69960 * 50.27456 * 21 20 15 24 24 C 1.45371 * 110.99795 * 194.62237 * 12 2 1 25 25 H 1.08999 * 109.47728 * 294.34464 * 1 2 3 26 26 H 1.09002 * 109.47304 * 54.34431 * 1 2 3 27 27 H 1.09001 * 109.47146 * 174.33620 * 1 2 3 28 28 H 0.96999 * 120.00860 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.20482 * 77.83995 * 13 12 2 30 30 H 1.09000 * 109.20365 * 318.54547 * 13 12 2 31 31 H 1.09002 * 109.70161 * 34.93111 * 14 13 12 32 32 H 1.08999 * 109.69960 * 155.52896 * 14 13 12 33 33 H 1.08003 * 120.19055 * 359.97438 * 16 15 14 34 34 H 1.08006 * 119.96222 * 179.97438 * 17 16 15 35 35 H 1.08001 * 119.96487 * 180.02562 * 18 17 16 36 36 H 1.08004 * 120.19893 * 180.02562 * 19 18 17 37 37 H 1.08997 * 109.47501 * 266.60142 * 23 21 20 38 38 H 1.08999 * 109.47140 * 26.61045 * 23 21 20 39 39 H 1.09005 * 109.46882 * 146.60576 * 23 21 20 40 40 H 1.09001 * 109.20161 * 282.13934 * 24 12 2 41 41 H 1.09000 * 109.20339 * 41.47580 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5818 -1.6351 -1.1337 6 6 1.7906 -0.1796 -2.4798 7 7 1.9395 -0.9268 -3.5518 8 14 1.2516 1.6008 -2.6500 9 1 2.4391 2.4554 -2.9043 10 1 0.3011 1.7240 -3.7843 11 1 0.5860 2.0385 -1.3967 12 7 2.0196 -0.6925 1.1994 13 6 1.6150 -2.0888 1.1964 14 6 1.7181 -2.6895 2.6020 15 6 3.1442 -3.1518 2.8179 16 6 3.4252 -4.5039 2.8901 17 6 4.7288 -4.9214 3.0879 18 6 5.7434 -3.9904 3.2117 19 6 5.4570 -2.6392 3.1385 20 6 4.1519 -2.2272 2.9406 21 6 3.8332 -0.7487 2.8589 22 1 4.7126 -0.1673 3.1358 23 6 2.6764 -0.4175 3.8040 24 6 3.4314 -0.4225 1.4170 25 1 -0.3634 0.4236 0.9362 26 1 -0.3634 0.5990 -0.8350 27 1 -0.3633 -1.0227 -0.1014 28 1 1.7698 -0.5534 -4.4308 29 1 2.2609 -2.6478 0.5194 30 1 0.5842 -2.1626 0.8498 31 1 1.4604 -1.9340 3.3443 32 1 1.0394 -3.5379 2.6897 33 1 2.6311 -5.2295 2.7934 34 1 4.9546 -5.9760 3.1456 35 1 6.7608 -4.3185 3.3657 36 1 6.2481 -1.9102 3.2346 37 1 1.7349 -0.4664 3.2570 38 1 2.6589 -1.1367 4.6228 39 1 2.8115 0.5869 4.2055 40 1 4.0225 -1.0322 0.7336 41 1 3.6294 0.6311 1.2200 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404724946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:43 Heat of formation + Delta-G solvation = 42.738629 kcal Electronic energy + Delta-G solvation = -20308.447282 eV Core-core repulsion = 17574.508992 eV Total energy + Delta-G solvation = -2733.938291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.13103 -37.41489 -34.38063 -32.84875 -32.00946 -29.80582 -29.40713 -28.06335 -25.01958 -24.58990 -23.70595 -22.15740 -20.73432 -19.67790 -18.78298 -16.76983 -16.08186 -15.67513 -15.00282 -14.75198 -14.39974 -14.06619 -13.80440 -13.27585 -13.02816 -12.84889 -12.73174 -12.29880 -11.93271 -11.84630 -11.63967 -11.47911 -11.16899 -11.07469 -10.88315 -10.67107 -10.45132 -10.28367 -10.04042 -9.90158 -9.68852 -9.54482 -9.30994 -8.51494 -8.46154 -8.20750 -7.00753 -6.12950 -4.08248 1.65569 1.67584 3.26245 3.36397 3.38733 4.04394 4.40165 4.82744 4.94558 5.06472 5.20051 5.20706 5.22908 5.50532 5.64060 5.70163 5.75688 5.82695 5.94355 6.01538 6.04507 6.14720 6.29807 6.36238 6.38061 6.39294 6.51680 6.58046 6.67896 6.69391 6.73008 6.75206 6.83132 6.89247 6.98446 7.08498 7.14851 7.29476 7.32863 7.63140 8.16542 8.35947 8.49278 8.94823 9.54461 11.00275 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.006376 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.094013 B = 4390.191190 C = 4605.878404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.187 3.813 3 H 0.033 0.967 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.863 3.137 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.251 1.251 12 N -0.551 5.551 13 C 0.085 3.915 14 C -0.108 4.108 15 C -0.066 4.066 16 C -0.121 4.121 17 C -0.129 4.129 18 C -0.131 4.131 19 C -0.120 4.120 20 C -0.068 4.068 21 C -0.053 4.053 22 H 0.072 0.928 23 C -0.153 4.153 24 C 0.089 3.911 25 H 0.032 0.968 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.262 0.738 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.034 0.966 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.563 -2.552 14.312 14.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.080 3.920 3 H 0.050 0.950 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.690 3.310 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.175 1.175 12 N -0.275 5.275 13 C -0.043 4.043 14 C -0.145 4.145 15 C -0.066 4.066 16 C -0.139 4.139 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.138 4.138 20 C -0.068 4.068 21 C -0.072 4.072 22 H 0.090 0.910 23 C -0.209 4.209 24 C -0.040 4.040 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.342 -2.391 14.462 14.844 hybrid contribution 0.438 0.363 -1.170 1.301 sum 2.779 -2.028 13.292 13.730 Atomic orbital electron populations 1.22174 0.98260 1.00515 0.98766 1.19564 0.91706 0.94013 0.86717 0.94963 1.21588 1.36861 1.10212 0.89975 0.90945 1.24937 0.94358 0.97350 0.95824 1.70008 1.48940 1.35490 0.98420 0.87176 0.78753 0.86612 0.78414 1.20837 1.21429 1.17538 1.59335 1.14916 1.12710 1.40546 1.21462 1.01152 0.88458 0.93234 1.21582 0.91586 1.01065 1.00301 1.19822 0.96292 0.92699 0.97799 1.21087 0.96526 0.95232 1.01025 1.21045 0.93184 0.99034 1.01474 1.21027 0.98737 0.93292 1.01863 1.21059 0.95937 0.95682 1.01085 1.19842 0.92758 0.95844 0.98399 1.20526 0.98619 0.90880 0.97151 0.91003 1.22168 1.01278 0.99410 0.98087 1.21412 0.89188 1.00354 0.93053 0.94923 0.93636 0.93294 0.92790 0.94741 0.90477 0.87882 0.91803 0.86389 0.86754 0.86764 0.86455 0.87731 0.93854 0.93775 0.94727 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.37 37.16 0.31 -2.64 16 2 C 0.19 4.25 1.82 -68.87 -0.13 4.13 16 3 H 0.03 0.76 6.23 -51.93 -0.32 0.43 16 4 C -0.55 -14.87 8.04 -34.44 -0.28 -15.14 16 5 H 0.07 2.19 6.70 -52.48 -0.35 1.84 16 6 C 0.08 2.21 5.36 -17.82 -0.10 2.11 16 7 N -0.89 -26.93 13.96 55.43 0.77 -26.16 16 8 Si 0.86 20.86 25.93 -169.99 -4.41 16.45 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.25 -5.67 5.38 56.52 0.30 -5.37 16 12 N -0.55 -10.81 2.43 -230.33 -0.56 -11.37 16 13 C 0.09 1.62 4.45 -4.54 -0.02 1.60 16 14 C -0.11 -1.68 5.44 -27.40 -0.15 -1.83 16 15 C -0.07 -1.05 4.79 -104.57 -0.50 -1.55 16 16 C -0.12 -1.76 9.70 -39.54 -0.38 -2.14 16 17 C -0.13 -1.75 10.05 -39.55 -0.40 -2.14 16 18 C -0.13 -1.76 10.05 -39.55 -0.40 -2.16 16 19 C -0.12 -1.73 9.70 -39.54 -0.38 -2.11 16 20 C -0.07 -1.08 4.41 -104.56 -0.46 -1.54 16 21 C -0.05 -0.81 3.05 -91.29 -0.28 -1.09 16 22 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 23 C -0.15 -2.15 7.76 37.16 0.29 -1.87 16 24 C 0.09 1.66 4.71 -4.55 -0.02 1.64 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.99 4.98 -51.93 -0.26 0.73 16 27 H 0.05 1.03 6.40 -51.93 -0.33 0.70 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.03 0.77 6.63 -51.93 -0.34 0.43 16 30 H 0.08 1.50 5.77 -51.93 -0.30 1.20 16 31 H 0.10 1.52 4.00 -51.93 -0.21 1.31 16 32 H 0.06 0.88 7.93 -51.93 -0.41 0.47 16 33 H 0.12 1.51 7.98 -52.48 -0.42 1.09 16 34 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.12 1.47 7.98 -52.48 -0.42 1.05 16 37 H 0.10 1.62 4.39 -51.93 -0.23 1.39 16 38 H 0.04 0.58 7.32 -51.93 -0.38 0.20 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.03 0.74 7.76 -51.93 -0.40 0.34 16 41 H 0.07 1.25 7.65 -51.93 -0.40 0.85 16 LS Contribution 299.93 15.07 4.52 4.52 Total: -1.00 -29.28 299.93 -8.68 -37.95 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.11 Total: 3.33 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -2.89 Total: -24.72 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.21 Total: -37.53 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.41 Total: 16.45 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.28 -8.68 -37.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404724946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.693 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds