Wall clock time and date at job start Mon Mar 30 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46927 * 2 1 4 4 C 1.50696 * 109.47370 * 240.00567 * 2 1 3 5 5 H 1.08007 * 119.99887 * 245.23831 * 4 2 1 6 6 C 1.37872 * 120.00276 * 65.23215 * 4 2 1 7 7 N 1.31514 * 120.00417 * 195.96423 * 6 4 2 8 8 Si 1.86796 * 120.00048 * 15.96589 * 6 4 2 9 9 H 1.48501 * 109.47054 * 94.90217 * 8 6 4 10 10 H 1.48502 * 109.47288 * 214.90119 * 8 6 4 11 11 H 1.48505 * 109.47311 * 334.90308 * 8 6 4 12 12 N 1.46900 * 109.46965 * 120.00166 * 2 1 3 13 13 C 1.45371 * 110.99755 * 63.13267 * 12 2 1 14 14 C 1.53205 * 110.85188 * 198.19484 * 13 12 2 15 15 C 1.51467 * 108.29090 * 275.23274 * 14 13 12 16 16 C 1.38280 * 119.81377 * 249.47207 * 15 14 13 17 17 C 1.38311 * 119.61331 * 180.02562 * 16 15 14 18 18 C 1.38260 * 120.07910 * 359.96295 * 17 16 15 19 19 C 1.38310 * 120.07510 * 0.02562 * 18 17 16 20 20 C 1.37308 * 119.88055 * 69.44816 * 15 14 13 21 21 C 1.51472 * 119.87004 * 359.97438 * 20 15 14 22 22 H 1.08999 * 109.70150 * 170.88293 * 21 20 15 23 23 C 1.53002 * 109.69960 * 50.27456 * 21 20 15 24 24 C 1.45371 * 110.99795 * 194.62237 * 12 2 1 25 25 H 1.08999 * 109.47728 * 294.34464 * 1 2 3 26 26 H 1.09002 * 109.47304 * 54.34431 * 1 2 3 27 27 H 1.09001 * 109.47146 * 174.33620 * 1 2 3 28 28 H 0.96999 * 120.00860 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.20482 * 77.83995 * 13 12 2 30 30 H 1.09000 * 109.20365 * 318.54547 * 13 12 2 31 31 H 1.09002 * 109.70161 * 34.93111 * 14 13 12 32 32 H 1.08999 * 109.69960 * 155.52896 * 14 13 12 33 33 H 1.08003 * 120.19055 * 359.97438 * 16 15 14 34 34 H 1.08006 * 119.96222 * 179.97438 * 17 16 15 35 35 H 1.08001 * 119.96487 * 180.02562 * 18 17 16 36 36 H 1.08004 * 120.19893 * 180.02562 * 19 18 17 37 37 H 1.08997 * 109.47501 * 266.60142 * 23 21 20 38 38 H 1.08999 * 109.47140 * 26.61045 * 23 21 20 39 39 H 1.09005 * 109.46882 * 146.60576 * 23 21 20 40 40 H 1.09001 * 109.20161 * 282.13934 * 24 12 2 41 41 H 1.09000 * 109.20339 * 41.47580 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5818 -1.6351 -1.1337 6 6 1.7906 -0.1796 -2.4798 7 7 1.9395 -0.9268 -3.5518 8 14 1.2516 1.6008 -2.6500 9 1 2.4391 2.4554 -2.9043 10 1 0.3011 1.7240 -3.7843 11 1 0.5860 2.0385 -1.3967 12 7 2.0196 -0.6925 1.1994 13 6 1.6150 -2.0888 1.1964 14 6 1.7181 -2.6895 2.6020 15 6 3.1442 -3.1518 2.8179 16 6 3.4252 -4.5039 2.8901 17 6 4.7288 -4.9214 3.0879 18 6 5.7434 -3.9904 3.2117 19 6 5.4570 -2.6392 3.1385 20 6 4.1519 -2.2272 2.9406 21 6 3.8332 -0.7487 2.8589 22 1 4.7126 -0.1673 3.1358 23 6 2.6764 -0.4175 3.8040 24 6 3.4314 -0.4225 1.4170 25 1 -0.3634 0.4236 0.9362 26 1 -0.3634 0.5990 -0.8350 27 1 -0.3633 -1.0227 -0.1014 28 1 1.7698 -0.5534 -4.4308 29 1 2.2609 -2.6478 0.5194 30 1 0.5842 -2.1626 0.8498 31 1 1.4604 -1.9340 3.3443 32 1 1.0394 -3.5379 2.6897 33 1 2.6311 -5.2295 2.7934 34 1 4.9546 -5.9760 3.1456 35 1 6.7608 -4.3185 3.3657 36 1 6.2481 -1.9102 3.2346 37 1 1.7349 -0.4664 3.2570 38 1 2.6589 -1.1367 4.6228 39 1 2.8115 0.5869 4.2055 40 1 4.0225 -1.0322 0.7336 41 1 3.6294 0.6311 1.2200 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404724946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:42 Heat of formation + Delta-G solvation = 26.744628 kcal Electronic energy + Delta-G solvation = -20309.140834 eV Core-core repulsion = 17574.508992 eV Total energy + Delta-G solvation = -2734.631842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.38871 -38.86068 -35.89886 -34.30345 -33.80177 -31.30472 -30.73752 -29.30452 -27.06594 -25.98755 -25.07943 -23.30177 -22.28166 -21.07205 -20.28303 -18.71334 -17.48995 -17.07503 -16.45465 -16.16898 -15.89682 -15.48223 -15.32873 -14.70099 -14.48209 -14.37145 -14.12277 -13.87336 -13.36998 -13.26950 -13.14469 -12.93261 -12.75610 -12.54826 -12.31936 -12.13250 -11.98676 -11.79150 -11.53697 -11.46665 -11.33950 -11.19586 -10.94319 -10.60967 -9.63064 -9.38994 -8.73306 -8.31908 -6.31312 0.54246 0.55202 1.34085 1.38298 1.48480 2.35106 2.91502 3.04565 3.24525 3.74254 3.89372 4.12514 4.17764 4.30528 4.42468 4.47922 4.50105 4.53569 4.63498 4.69080 4.76073 4.80445 4.85720 4.92985 5.02166 5.08287 5.12067 5.17781 5.20453 5.28316 5.29538 5.33698 5.43220 5.57215 5.62716 5.65593 5.66376 5.78200 5.92639 6.20842 6.21732 6.45683 6.73055 6.76407 7.35513 8.85455 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.006376 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.094013 B = 4390.191190 C = 4605.878404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.185 3.815 3 H 0.035 0.965 4 C -0.543 4.543 5 H 0.022 0.978 6 C 0.018 3.982 7 N -0.945 5.945 8 Si 0.930 3.070 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.220 1.220 12 N -0.535 5.535 13 C 0.093 3.907 14 C -0.097 4.097 15 C -0.089 4.089 16 C -0.134 4.134 17 C -0.134 4.134 18 C -0.134 4.134 19 C -0.131 4.131 20 C -0.089 4.089 21 C -0.045 4.045 22 H 0.090 0.910 23 C -0.145 4.145 24 C 0.090 3.910 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.263 0.737 29 H -0.012 1.012 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.060 0.940 40 H -0.007 1.007 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.320 -1.458 16.789 17.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.078 3.922 3 H 0.053 0.947 4 C -0.582 4.582 5 H 0.040 0.960 6 C -0.180 4.180 7 N -0.585 5.585 8 Si 0.754 3.246 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.142 1.142 12 N -0.258 5.258 13 C -0.035 4.035 14 C -0.134 4.134 15 C -0.089 4.089 16 C -0.152 4.152 17 C -0.151 4.151 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.089 4.089 21 C -0.064 4.064 22 H 0.109 0.891 23 C -0.202 4.202 24 C -0.039 4.039 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.006 0.994 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.099 0.901 33 H 0.149 0.851 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.012 0.988 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.098 -1.299 16.978 17.157 hybrid contribution 0.621 -0.126 -1.950 2.050 sum 2.719 -1.425 15.029 15.339 Atomic orbital electron populations 1.22063 0.96453 1.00421 1.00237 1.19551 0.93079 0.93747 0.85873 0.94667 1.21816 1.35644 1.08534 0.92165 0.95969 1.25846 0.94835 1.02023 0.95295 1.70161 1.51397 1.37814 0.99120 0.86108 0.78487 0.80408 0.79591 1.20688 1.21402 1.14227 1.59483 1.15406 1.12673 1.38229 1.21410 0.99428 0.87724 0.94964 1.21489 0.92384 1.01812 0.97677 1.19969 0.96349 0.93563 0.99038 1.21372 0.97737 0.95111 1.00957 1.21418 0.92735 1.00568 1.00423 1.21412 1.00141 0.92932 1.00696 1.21365 0.95877 0.96802 1.00838 1.20019 0.93554 0.95975 0.99386 1.20482 0.99942 0.91265 0.94685 0.89131 1.22075 0.99703 1.00680 0.97765 1.21463 0.87924 0.99555 0.94920 0.91733 0.94059 0.93963 0.92784 0.99366 0.91179 0.86508 0.90083 0.85054 0.84187 0.84081 0.84771 0.88986 0.92853 0.92143 0.98826 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.45 8.37 71.98 0.60 -4.84 16 2 C 0.19 8.39 1.82 44.17 0.08 8.48 16 3 H 0.04 1.60 6.23 -2.39 -0.01 1.58 16 4 C -0.54 -30.63 8.04 25.60 0.21 -30.43 16 5 H 0.02 1.44 6.70 -2.91 -0.02 1.42 16 6 C 0.02 1.05 5.36 84.65 0.45 1.50 16 7 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 8 Si 0.93 43.08 25.93 68.60 1.78 44.86 16 9 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 10 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 11 H -0.22 -9.01 5.38 99.48 0.54 -8.47 16 12 N -0.53 -21.01 2.43 -882.62 -2.15 -23.15 16 13 C 0.09 3.64 4.45 86.66 0.39 4.03 16 14 C -0.10 -2.93 5.44 30.16 0.16 -2.77 16 15 C -0.09 -2.78 4.79 -19.83 -0.09 -2.87 16 16 C -0.13 -3.77 9.70 22.30 0.22 -3.56 16 17 C -0.13 -3.36 10.05 22.29 0.22 -3.14 16 18 C -0.13 -3.33 10.05 22.29 0.22 -3.10 16 19 C -0.13 -3.59 9.70 22.30 0.22 -3.37 16 20 C -0.09 -2.74 4.41 -19.83 -0.09 -2.83 16 21 C -0.04 -1.32 3.05 -11.23 -0.03 -1.35 16 22 H 0.09 2.31 7.93 -2.39 -0.02 2.29 16 23 C -0.15 -3.73 7.76 71.98 0.56 -3.17 16 24 C 0.09 3.40 4.71 86.66 0.41 3.81 16 25 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.04 1.69 4.98 -2.39 -0.01 1.68 16 27 H 0.04 1.75 6.40 -2.39 -0.02 1.73 16 28 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 29 H -0.01 -0.58 6.63 -2.39 -0.02 -0.60 16 30 H 0.07 2.79 5.77 -2.39 -0.01 2.78 16 31 H 0.12 3.23 4.00 -2.39 -0.01 3.22 16 32 H 0.08 2.14 7.93 -2.39 -0.02 2.12 16 33 H 0.13 3.21 7.98 -2.91 -0.02 3.18 16 34 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.13 3.10 7.98 -2.91 -0.02 3.07 16 37 H 0.09 2.62 4.39 -2.39 -0.01 2.61 16 38 H 0.05 1.27 7.32 -2.39 -0.02 1.25 16 39 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 40 H -0.01 -0.30 7.76 -2.39 -0.02 -0.32 16 41 H 0.07 2.54 7.65 -2.39 -0.02 2.52 16 Total: -1.00 -66.43 299.93 4.30 -62.13 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.84 Total: 18.97 kcal Atomic # 6 Polarization: -47.15 SS G_CDS: 3.52 Total: -43.63 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -1.85 Total: -82.33 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.78 Total: 44.86 kcal Total: -66.43 4.30 -62.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404724946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.878 kcal (2) G-P(sol) polarization free energy of solvation -66.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds