Wall clock time and date at job start Mon Mar 30 2020 06:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 115.56295 * 2 1 4 4 C 1.53006 * 117.49500 * 145.68622 * 2 1 3 5 5 C 1.53004 * 59.99955 * 107.48991 * 4 2 1 6 6 H 1.08996 * 117.50003 * 107.50759 * 5 4 2 7 7 N 1.46502 * 117.49772 * 252.51046 * 5 4 2 8 8 C 1.46502 * 120.00007 * 2.36275 * 7 5 4 9 9 C 1.52998 * 109.47058 * 271.78953 * 8 7 5 10 10 C 1.52998 * 109.46724 * 179.97438 * 9 8 7 11 11 C 1.50709 * 109.46988 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99624 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99775 * 180.02562 * 11 10 9 14 14 N 1.31521 * 119.99400 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00303 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.46976 * 90.00653 * 15 13 11 17 17 H 1.48499 * 109.46869 * 210.00568 * 15 13 11 18 18 H 1.48500 * 109.46983 * 330.00261 * 15 13 11 19 19 C 1.39673 * 120.00088 * 182.36776 * 7 5 4 20 20 C 1.38917 * 120.07169 * 353.51496 * 19 7 5 21 21 C 1.38102 * 119.91953 * 179.74779 * 20 19 7 22 22 C 1.38284 * 120.07956 * 0.55534 * 21 20 19 23 23 C 1.38288 * 120.14702 * 359.70138 * 22 21 20 24 24 C 1.38101 * 120.07316 * 0.02562 * 23 22 21 25 25 H 1.08997 * 109.46797 * 203.66692 * 1 2 3 26 26 H 1.09003 * 109.46785 * 323.66815 * 1 2 3 27 27 H 1.08997 * 109.47027 * 83.66920 * 1 2 3 28 28 H 1.08991 * 117.50268 * 0.02562 * 4 2 1 29 29 H 1.09002 * 117.51216 * 214.96644 * 4 2 1 30 30 H 1.09006 * 109.46713 * 31.78677 * 8 7 5 31 31 H 1.08997 * 109.47003 * 151.78988 * 8 7 5 32 32 H 1.08996 * 109.47245 * 300.00012 * 9 8 7 33 33 H 1.08997 * 109.47185 * 60.00146 * 9 8 7 34 34 H 1.09005 * 109.47467 * 299.99875 * 10 9 8 35 35 H 1.09005 * 109.47412 * 60.00283 * 10 9 8 36 36 H 0.97000 * 119.99152 * 179.97438 * 14 13 11 37 37 H 1.07994 * 120.03854 * 0.02926 * 20 19 7 38 38 H 1.08002 * 119.96190 * 180.27731 * 21 20 19 39 39 H 1.08002 * 119.92851 * 179.72411 * 22 21 20 40 40 H 1.07994 * 119.96300 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.04106 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1210 0.7651 5 6 2.2365 -1.1211 -0.7649 6 1 3.1716 -0.8756 -1.2682 7 7 1.3961 -2.1123 -1.4413 8 6 0.5574 -3.0205 -0.6551 9 6 1.3615 -4.2701 -0.2906 10 6 0.4858 -5.2182 0.5310 11 6 1.2779 -6.4488 0.8906 12 1 2.3032 -6.5452 0.5652 13 6 0.6933 -7.4521 1.6341 14 7 1.3845 -8.5262 1.9474 15 14 -1.0803 -7.2856 2.1962 16 1 -1.9820 -7.8631 1.1673 17 1 -1.2633 -8.0119 3.4785 18 1 -1.4055 -5.8497 2.3899 19 6 1.3945 -2.1916 -2.8358 20 6 2.0823 -1.2473 -3.5875 21 6 2.0830 -1.3317 -4.9659 22 6 1.3905 -2.3479 -5.5984 23 6 0.7004 -3.2864 -4.8533 24 6 0.7002 -3.2112 -3.4744 25 1 -0.3633 -0.9412 0.4125 26 1 -0.3633 0.8279 0.6089 27 1 -0.3633 0.1133 -1.0214 28 1 1.6113 -1.8587 1.2680 29 1 3.1717 -0.8755 1.2683 30 1 0.2335 -2.5181 0.2565 31 1 -0.3153 -3.3081 -1.2413 32 1 1.6855 -4.7723 -1.2021 33 1 2.2342 -3.9824 0.2956 34 1 0.1621 -4.7157 1.4426 35 1 -0.3873 -5.5059 -0.0548 36 1 0.9732 -9.2319 2.4708 37 1 2.6197 -0.4508 -3.0943 38 1 2.6212 -0.6005 -5.5508 39 1 1.3890 -2.4090 -6.6767 40 1 0.1603 -4.0786 -5.3504 41 1 0.1607 -3.9443 -2.8930 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411920553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:01 Heat of formation + Delta-G solvation = 33.663428 kcal Electronic energy + Delta-G solvation = -19267.303658 eV Core-core repulsion = 16532.971838 eV Total energy + Delta-G solvation = -2734.331821 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.88403 -38.93996 -36.46959 -35.04832 -33.54206 -31.72862 -30.30542 -29.55416 -28.15581 -25.19552 -23.67581 -22.71203 -22.20360 -21.64995 -20.47540 -18.97085 -18.57096 -16.95699 -16.59381 -16.26794 -16.10816 -15.73064 -15.09550 -14.85472 -14.68416 -14.48479 -14.22574 -14.01441 -13.66287 -13.43049 -13.37061 -13.13522 -12.84133 -12.61351 -12.23923 -12.09636 -11.98226 -11.84501 -11.59326 -11.55803 -11.42043 -11.31942 -10.94141 -10.78322 -10.31458 -9.74500 -8.31212 -8.07442 -6.35811 0.61692 0.77811 1.34834 1.36665 1.48630 2.11392 2.34776 2.84497 3.04286 3.12275 3.76862 3.80992 3.91484 4.03632 4.19602 4.20838 4.32449 4.41298 4.46123 4.54681 4.62408 4.68408 4.72128 4.78902 4.86930 4.92660 4.95605 4.99482 5.02546 5.08109 5.16786 5.22837 5.41970 5.47604 5.50794 5.55310 5.63751 5.69206 5.81839 6.09341 6.25692 6.43754 6.68654 6.72337 7.28751 8.86238 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.005592 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.747847 B = 5006.359978 C = 5942.223886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.155 4.155 3 H 0.127 0.873 4 C -0.189 4.189 5 C 0.078 3.922 6 H 0.129 0.871 7 N -0.595 5.595 8 C 0.126 3.874 9 C -0.104 4.104 10 C -0.007 4.007 11 C -0.533 4.533 12 H 0.024 0.976 13 C 0.003 3.997 14 N -0.953 5.953 15 Si 0.953 3.047 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.242 1.242 19 C 0.208 3.792 20 C -0.203 4.203 21 C -0.078 4.078 22 C -0.189 4.189 23 C -0.084 4.084 24 C -0.218 4.218 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.024 0.976 35 H 0.019 0.981 36 H 0.266 0.734 37 H 0.132 0.868 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 20.442 -9.841 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.175 4.175 3 H 0.145 0.855 4 C -0.227 4.227 5 C -0.027 4.027 6 H 0.147 0.853 7 N -0.302 5.302 8 C 0.004 3.996 9 C -0.143 4.143 10 C -0.045 4.045 11 C -0.571 4.571 12 H 0.042 0.958 13 C -0.194 4.194 14 N -0.594 5.594 15 Si 0.776 3.224 16 H -0.191 1.191 17 H -0.209 1.209 18 H -0.166 1.166 19 C 0.106 3.894 20 C -0.225 4.225 21 C -0.097 4.097 22 C -0.209 4.209 23 C -0.102 4.102 24 C -0.241 4.241 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.150 0.850 38 H 0.162 0.838 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.254 20.291 -9.576 22.549 hybrid contribution -0.292 -0.988 0.575 1.180 sum -2.546 19.302 -9.000 21.449 Atomic orbital electron populations 1.21325 0.93004 1.01816 1.01500 1.22950 0.95867 0.95092 1.03600 0.85506 1.23547 1.03808 1.01952 0.93382 1.21755 0.95717 0.93237 0.91964 0.85311 1.45987 1.46443 1.36060 1.01749 1.21568 0.92771 0.89287 0.96015 1.21686 0.98635 0.95315 0.98635 1.19451 0.95579 0.93736 0.95714 1.21460 0.98922 1.03295 1.33396 0.95751 1.26069 1.03262 0.94412 0.95611 1.70088 1.39541 1.09371 1.40406 0.85617 0.78910 0.79952 0.77933 1.19134 1.20914 1.16561 1.18031 0.94445 0.93866 0.83021 1.20865 1.06000 1.01156 0.94473 1.21205 0.97096 0.97726 0.93634 1.21170 1.02042 0.97178 1.00530 1.21127 0.97730 0.98535 0.92820 1.20894 1.06789 1.00632 0.95765 0.93409 0.91049 0.92921 0.89500 0.86810 0.89693 0.90888 0.94502 0.93639 0.95770 0.96245 0.92483 0.84981 0.83814 0.84550 0.85221 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 9.33 71.98 0.67 -1.74 16 2 C -0.16 -3.01 6.41 -10.79 -0.07 -3.08 16 3 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.19 -4.32 9.46 30.60 0.29 -4.03 16 5 C 0.08 1.84 5.63 44.99 0.25 2.09 16 6 H 0.13 2.70 6.98 -2.39 -0.02 2.68 16 7 N -0.60 -16.84 2.51 -673.34 -1.69 -18.54 16 8 C 0.13 3.99 3.88 86.38 0.34 4.33 16 9 C -0.10 -4.19 5.47 30.59 0.17 -4.02 16 10 C -0.01 -0.32 4.04 29.85 0.12 -0.20 16 11 C -0.53 -31.56 9.66 25.60 0.25 -31.31 16 12 H 0.02 1.61 7.99 -2.91 -0.02 1.58 16 13 C 0.00 0.17 5.47 84.65 0.46 0.64 16 14 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 15 Si 0.95 44.45 27.47 68.60 1.88 46.33 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 19 C 0.21 5.98 6.53 38.21 0.25 6.23 16 20 C -0.20 -4.91 9.25 22.40 0.21 -4.71 16 21 C -0.08 -1.67 10.04 22.25 0.22 -1.45 16 22 C -0.19 -4.21 10.04 22.29 0.22 -3.99 16 23 C -0.08 -2.15 10.04 22.25 0.22 -1.93 16 24 C -0.22 -6.56 9.16 22.40 0.21 -6.36 16 25 H 0.05 1.09 5.44 -2.39 -0.01 1.07 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.09 2.35 6.22 -2.39 -0.01 2.33 16 29 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.09 2.51 4.02 -2.38 -0.01 2.50 16 31 H 0.07 2.28 6.37 -2.39 -0.02 2.27 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.02 1.09 7.20 -2.38 -0.02 1.07 16 35 H 0.02 0.88 7.57 -2.38 -0.02 0.86 16 36 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.13 2.71 6.44 -2.91 -0.02 2.70 16 38 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 40 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 41 H 0.11 3.53 6.28 -2.91 -0.02 3.51 16 Total: -1.00 -67.97 324.96 5.24 -62.73 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.94 Total: 19.68 kcal Atomic # 6 Polarization: -53.33 SS G_CDS: 3.81 Total: -49.52 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -1.39 Total: -79.22 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -67.97 5.24 -62.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411920553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.390 kcal (2) G-P(sol) polarization free energy of solvation -67.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds