Wall clock time and date at job start Mon Mar 30 2020 06:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 115.55423 * 2 1 4 4 C 1.53080 * 117.49639 * 214.27068 * 2 1 3 5 5 C 1.52994 * 59.98467 * 252.51516 * 4 2 1 6 6 H 1.08995 * 117.49973 * 107.50186 * 5 4 2 7 7 N 1.46505 * 117.49807 * 252.49562 * 5 4 2 8 8 C 1.46505 * 119.99902 * 2.69877 * 7 5 4 9 9 C 1.53000 * 109.46975 * 89.99824 * 8 7 5 10 10 C 1.53001 * 109.46915 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47303 * 180.02562 * 10 9 8 12 12 H 1.08007 * 119.99860 * 359.97438 * 11 10 9 13 13 C 1.37867 * 120.00296 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00221 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00185 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47000 * 60.00166 * 15 13 11 17 17 H 1.48501 * 109.46950 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46826 * 299.99638 * 15 13 11 19 19 C 1.39674 * 120.00054 * 182.69450 * 7 5 4 20 20 C 1.38915 * 120.07520 * 4.88905 * 19 7 5 21 21 C 1.38098 * 119.92409 * 179.76903 * 20 19 7 22 22 C 1.38284 * 120.07540 * 0.50013 * 21 20 19 23 23 C 1.38285 * 120.15098 * 359.75406 * 22 21 20 24 24 C 1.38101 * 120.07345 * 359.97438 * 23 22 21 25 25 H 1.08992 * 109.47186 * 274.32596 * 1 2 3 26 26 H 1.08999 * 109.46613 * 34.33030 * 1 2 3 27 27 H 1.08999 * 109.46476 * 154.32597 * 1 2 3 28 28 H 1.09005 * 117.51443 * 145.03341 * 4 2 1 29 29 H 1.09001 * 117.48772 * 0.02562 * 4 2 1 30 30 H 1.09000 * 109.47049 * 329.99959 * 8 7 5 31 31 H 1.08995 * 109.46935 * 209.99831 * 8 7 5 32 32 H 1.09000 * 109.47122 * 60.00181 * 9 8 7 33 33 H 1.08995 * 109.47295 * 299.99787 * 9 8 7 34 34 H 1.08995 * 109.47047 * 300.00040 * 10 9 8 35 35 H 1.09000 * 109.46995 * 60.00205 * 10 9 8 36 36 H 0.97000 * 120.00667 * 180.02562 * 14 13 11 37 37 H 1.08004 * 120.03264 * 359.97438 * 20 19 7 38 38 H 1.08005 * 119.96324 * 180.25585 * 21 20 19 39 39 H 1.08003 * 119.92383 * 179.76288 * 22 21 20 40 40 H 1.07998 * 119.96600 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.04210 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2368 -1.1221 -0.7646 5 6 2.2365 -1.1208 0.7653 6 1 1.6113 -1.8579 1.2691 7 7 3.4933 -0.7902 1.4417 8 6 4.6727 -0.4195 0.6556 9 6 4.6870 1.0953 0.4409 10 6 5.9190 1.4825 -0.3796 11 6 5.9335 2.9745 -0.5906 12 1 5.1428 3.5856 -0.1809 13 6 6.9556 3.5595 -1.3075 14 7 7.9182 2.8155 -1.8068 15 14 6.9731 5.4090 -1.5697 16 1 7.0198 6.0950 -0.2535 17 1 8.1690 5.7847 -2.3658 18 1 5.7449 5.8173 -2.2976 19 6 3.5671 -0.8283 2.8360 20 6 2.4820 -1.2767 3.5785 21 6 2.5601 -1.3176 4.9567 22 6 3.7129 -0.9031 5.5981 23 6 4.7930 -0.4512 4.8622 24 6 4.7237 -0.4129 3.4835 25 1 -0.3633 0.0775 1.0247 26 1 -0.3632 0.8487 -0.5796 27 1 -0.3632 -0.9262 -0.4452 28 1 3.1720 -0.8770 -1.2681 29 1 1.6113 -1.8596 -1.2677 30 1 4.6384 -0.9231 -0.3105 31 1 5.5743 -0.7193 1.1898 32 1 4.7213 1.5989 1.4069 33 1 3.7855 1.3951 -0.0933 34 1 6.8204 1.1827 0.1550 35 1 5.8852 0.9788 -1.3456 36 1 8.6375 3.2271 -2.3109 37 1 1.5797 -1.5961 3.0783 38 1 1.7183 -1.6700 5.5344 39 1 3.7699 -0.9325 6.6762 40 1 5.6917 -0.1278 5.3663 41 1 5.5678 -0.0603 2.9093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411920558.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:07 Heat of formation + Delta-G solvation = 29.321561 kcal Electronic energy + Delta-G solvation = -19114.803543 eV Core-core repulsion = 16380.283444 eV Total energy + Delta-G solvation = -2734.520098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.83615 -38.90207 -36.48851 -35.20757 -33.38559 -31.69816 -30.42364 -29.06904 -27.93631 -25.43143 -23.70860 -22.74668 -22.55375 -21.23796 -20.81187 -18.91077 -18.48494 -17.17800 -16.63131 -16.33071 -15.69741 -15.42052 -15.15251 -14.88473 -14.49588 -14.39339 -14.10048 -14.03081 -13.85174 -13.57352 -13.16237 -12.93634 -12.71958 -12.70315 -12.45645 -12.30885 -12.20794 -11.86078 -11.73399 -11.45011 -11.30891 -11.13665 -11.03870 -10.58196 -10.32987 -9.75536 -8.25258 -8.07723 -6.34469 0.60699 0.76713 1.36608 1.39400 1.47531 2.08589 2.38359 2.82782 3.09598 3.10764 3.76476 3.86732 3.91637 3.95049 4.20260 4.21308 4.31144 4.42357 4.47169 4.56736 4.61253 4.68546 4.74410 4.83314 4.87979 4.92881 4.97193 5.04008 5.08261 5.13664 5.22311 5.26462 5.42989 5.45011 5.51451 5.67001 5.68983 5.80027 5.81583 6.08497 6.20303 6.40999 6.67561 6.80574 7.34624 8.88107 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.005357 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.559243 B = 5225.988952 C = 6251.261594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.180 4.180 3 H 0.079 0.921 4 C -0.179 4.179 5 C 0.089 3.911 6 H 0.143 0.857 7 N -0.602 5.602 8 C 0.130 3.870 9 C -0.106 4.106 10 C 0.030 3.970 11 C -0.544 4.544 12 H 0.052 0.948 13 C 0.004 3.996 14 N -0.930 5.930 15 Si 0.962 3.038 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.267 1.267 19 C 0.206 3.794 20 C -0.203 4.203 21 C -0.076 4.076 22 C -0.188 4.188 23 C -0.083 4.083 24 C -0.220 4.220 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.127 0.873 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.049 0.951 34 H -0.008 1.008 35 H -0.004 1.004 36 H 0.265 0.735 37 H 0.135 0.865 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.309 -10.348 9.627 20.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.200 4.200 3 H 0.097 0.903 4 C -0.217 4.217 5 C -0.016 4.016 6 H 0.160 0.840 7 N -0.309 5.309 8 C 0.007 3.993 9 C -0.145 4.145 10 C -0.007 4.007 11 C -0.582 4.582 12 H 0.070 0.930 13 C -0.194 4.194 14 N -0.570 5.570 15 Si 0.786 3.214 16 H -0.194 1.194 17 H -0.204 1.204 18 H -0.192 1.192 19 C 0.104 3.896 20 C -0.225 4.225 21 C -0.094 4.094 22 C -0.208 4.208 23 C -0.102 4.102 24 C -0.242 4.242 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.145 0.855 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.011 0.989 35 H 0.014 0.986 36 H 0.073 0.927 37 H 0.153 0.847 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.147 0.853 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.143 -10.358 9.346 19.866 hybrid contribution 0.848 1.249 -0.593 1.622 sum -13.296 -9.109 8.753 18.340 Atomic orbital electron populations 1.21297 0.90472 1.02762 1.02294 1.23016 0.96902 0.94640 1.05489 0.90327 1.23567 1.02851 1.02035 0.93233 1.21836 0.87556 1.00440 0.91760 0.83971 1.46138 1.10013 1.72696 1.02042 1.21418 0.87466 0.94660 0.95800 1.21851 0.98489 0.95283 0.98828 1.18905 0.92767 0.95130 0.93935 1.21578 1.08624 0.94119 1.33901 0.92971 1.25918 0.95022 1.03284 0.95187 1.70071 1.12688 1.37496 1.36749 0.85557 0.77876 0.79464 0.78521 1.19426 1.20424 1.19223 1.18068 0.94586 0.93952 0.82946 1.20885 0.98553 1.08401 0.94680 1.21224 0.98167 0.96593 0.93454 1.21185 0.94080 1.04900 1.00603 1.21123 0.99307 0.97055 0.92695 1.20882 0.98349 1.09179 0.95821 0.91661 0.92273 0.90765 0.89926 0.85465 0.90402 0.91577 0.94399 0.93205 0.98937 0.98580 0.92657 0.84699 0.83459 0.84314 0.85258 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 10.19 71.98 0.73 -1.34 16 2 C -0.18 -4.60 6.07 -10.77 -0.07 -4.67 16 3 H 0.08 2.57 6.12 -2.39 -0.01 2.55 16 4 C -0.18 -4.34 9.39 30.62 0.29 -4.06 16 5 C 0.09 2.22 5.62 44.99 0.25 2.47 16 6 H 0.14 2.84 6.53 -2.39 -0.02 2.82 16 7 N -0.60 -18.64 2.94 -673.35 -1.98 -20.62 16 8 C 0.13 4.66 4.59 86.38 0.40 5.06 16 9 C -0.11 -4.59 5.41 30.59 0.17 -4.42 16 10 C 0.03 1.63 4.97 29.85 0.15 1.78 16 11 C -0.54 -31.89 9.11 25.60 0.23 -31.66 16 12 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 13 C 0.00 0.23 5.46 84.65 0.46 0.70 16 14 N -0.93 -57.08 13.29 21.44 0.28 -56.80 16 15 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 19 C 0.21 6.32 6.54 38.22 0.25 6.57 16 20 C -0.20 -5.08 9.30 22.40 0.21 -4.87 16 21 C -0.08 -1.65 10.04 22.25 0.22 -1.42 16 22 C -0.19 -4.29 10.04 22.29 0.22 -4.06 16 23 C -0.08 -2.26 10.04 22.25 0.22 -2.03 16 24 C -0.22 -7.10 9.13 22.40 0.20 -6.90 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.09 7.90 -2.39 -0.02 1.07 16 28 H 0.08 2.40 6.11 -2.38 -0.01 2.38 16 29 H 0.13 2.32 8.05 -2.39 -0.02 2.30 16 30 H 0.08 2.71 6.00 -2.39 -0.01 2.69 16 31 H 0.07 2.44 6.43 -2.39 -0.02 2.42 16 32 H 0.04 1.71 8.08 -2.39 -0.02 1.70 16 33 H 0.05 2.16 5.90 -2.39 -0.01 2.15 16 34 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 36 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.14 2.79 6.16 -2.91 -0.02 2.77 16 38 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.10 3.73 6.24 -2.91 -0.02 3.71 16 Total: -1.00 -66.22 329.29 5.28 -60.94 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 1.00 Total: 18.23 kcal Atomic # 6 Polarization: -52.81 SS G_CDS: 3.95 Total: -48.86 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -1.69 Total: -77.42 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -66.22 5.28 -60.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411920558.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.262 kcal (2) G-P(sol) polarization free energy of solvation -66.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds