Wall clock time and date at job start Mon Mar 30 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 115.56253 * 2 1 4 4 C 1.53073 * 117.49932 * 145.70626 * 2 1 3 5 5 C 1.52993 * 59.98525 * 107.48942 * 4 2 1 6 6 H 1.09010 * 117.49781 * 252.50401 * 5 4 2 7 7 N 1.46498 * 117.50079 * 107.50926 * 5 4 2 8 8 C 1.46506 * 119.99726 * 294.03507 * 7 5 4 9 9 C 1.53001 * 109.47203 * 89.99747 * 8 7 5 10 10 C 1.52991 * 109.47080 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47355 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99948 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00335 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00018 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00024 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47185 * 60.00253 * 15 13 11 17 17 H 1.48497 * 109.47301 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47334 * 300.00532 * 15 13 11 19 19 C 1.39673 * 120.00349 * 114.03302 * 7 5 4 20 20 C 1.38905 * 120.07151 * 4.88839 * 19 7 5 21 21 C 1.38112 * 119.92033 * 179.76941 * 20 19 7 22 22 C 1.38283 * 120.07400 * 0.50579 * 21 20 19 23 23 C 1.38284 * 120.15032 * 359.73896 * 22 21 20 24 24 C 1.38101 * 120.07242 * 0.02562 * 23 22 21 25 25 H 1.09004 * 109.46786 * 205.69183 * 1 2 3 26 26 H 1.09006 * 109.47059 * 325.68884 * 1 2 3 27 27 H 1.08994 * 109.47323 * 85.69071 * 1 2 3 28 28 H 1.09008 * 117.49206 * 0.02562 * 4 2 1 29 29 H 1.09002 * 117.51673 * 214.96512 * 4 2 1 30 30 H 1.08998 * 109.47253 * 210.00079 * 8 7 5 31 31 H 1.08999 * 109.47170 * 329.99895 * 8 7 5 32 32 H 1.08993 * 109.46858 * 300.00136 * 9 8 7 33 33 H 1.08999 * 109.46937 * 60.00005 * 9 8 7 34 34 H 1.08998 * 109.47476 * 300.00394 * 10 9 8 35 35 H 1.09007 * 109.46906 * 60.00561 * 10 9 8 36 36 H 0.96998 * 120.00321 * 179.97438 * 14 13 11 37 37 H 1.07997 * 120.04186 * 359.97438 * 20 19 7 38 38 H 1.07999 * 119.95751 * 180.24983 * 21 20 19 39 39 H 1.08008 * 119.92088 * 179.76803 * 22 21 20 40 40 H 1.07998 * 119.95808 * 179.97438 * 23 22 21 41 41 H 1.08006 * 120.03260 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2367 -1.1217 0.7650 5 6 2.2365 -1.1210 -0.7649 6 1 1.6112 -1.8583 -1.2685 7 7 3.4932 -0.7906 -1.4414 8 6 4.0582 0.5557 -1.3206 9 6 4.9926 0.6100 -0.1103 10 6 5.5831 2.0158 0.0154 11 6 6.5029 2.0695 1.2079 12 1 6.6518 1.1889 1.8151 13 6 7.1553 3.2426 1.5231 14 7 6.9744 4.3148 0.7835 15 14 8.2960 3.3089 3.0009 16 1 9.3937 2.3246 2.8234 17 1 8.8691 4.6734 3.1230 18 1 7.5318 2.9815 4.2313 19 6 4.1528 -1.7592 -2.2014 20 6 3.5693 -3.0038 -2.4009 21 6 4.2221 -3.9576 -3.1569 22 6 5.4600 -3.6782 -3.7064 23 6 6.0460 -2.4419 -3.5055 24 6 5.3965 -1.4820 -2.7546 25 1 -0.3633 -0.9261 0.4456 26 1 -0.3633 0.8489 0.5793 27 1 -0.3634 0.0772 -1.0247 28 1 1.6113 -1.8596 1.2677 29 1 3.1720 -0.8764 1.2683 30 1 4.6190 0.7968 -2.2237 31 1 3.2521 1.2776 -1.1899 32 1 4.4318 0.3690 0.7927 33 1 5.7987 -0.1119 -0.2410 34 1 6.1439 2.2565 -0.8877 35 1 4.7771 2.7380 0.1460 36 1 7.4330 5.1402 1.0054 37 1 2.6048 -3.2244 -1.9680 38 1 3.7671 -4.9241 -3.3157 39 1 5.9700 -4.4272 -4.2941 40 1 7.0130 -2.2272 -3.9357 41 1 5.8546 -0.5164 -2.5985 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411920559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:10 Heat of formation + Delta-G solvation = 43.316624 kcal Electronic energy + Delta-G solvation = -19077.270319 eV Core-core repulsion = 16343.357092 eV Total energy + Delta-G solvation = -2733.913227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.71386 -37.86733 -35.00538 -33.46783 -31.62560 -30.57736 -29.11318 -28.09438 -26.32916 -23.58682 -22.77531 -21.63126 -20.82395 -20.26610 -19.47980 -17.65376 -16.39071 -15.97841 -15.29930 -14.55054 -14.46277 -14.21637 -14.01793 -13.54331 -13.25830 -13.23078 -12.98728 -12.75793 -12.36369 -12.06516 -11.93235 -11.62631 -11.20398 -11.16575 -11.03048 -10.76199 -10.68517 -10.52270 -10.43975 -9.91233 -9.66441 -9.49565 -9.27531 -9.07979 -8.69118 -8.35901 -6.94294 -6.01064 -4.03496 1.67122 1.83979 3.24548 3.32799 3.37061 3.40119 3.83489 4.17248 4.45366 4.75616 4.87084 5.00468 5.12773 5.19983 5.28123 5.34462 5.35354 5.50193 5.65466 5.67899 5.72069 5.81141 5.85866 5.89219 5.98805 6.02715 6.13756 6.14674 6.23469 6.36951 6.51524 6.62976 6.70910 6.80599 6.86593 7.07897 7.13559 7.59056 7.64405 7.75147 7.83564 7.97939 8.41481 9.02823 9.60702 11.10014 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.005444 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.347982 B = 5142.413194 C = 6391.024969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.161 4.161 3 H 0.115 0.885 4 C -0.195 4.195 5 C 0.091 3.909 6 H 0.118 0.882 7 N -0.596 5.596 8 C 0.116 3.884 9 C -0.128 4.128 10 C 0.024 3.976 11 C -0.519 4.519 12 H 0.053 0.947 13 C 0.058 3.942 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.228 3.772 20 C -0.202 4.202 21 C -0.078 4.078 22 C -0.190 4.190 23 C -0.073 4.073 24 C -0.193 4.193 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.016 0.984 35 H 0.015 0.985 36 H 0.261 0.739 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.242 -12.941 -6.411 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.180 4.180 3 H 0.133 0.867 4 C -0.234 4.234 5 C -0.014 4.014 6 H 0.135 0.865 7 N -0.303 5.303 8 C -0.006 4.006 9 C -0.167 4.167 10 C -0.013 4.013 11 C -0.558 4.558 12 H 0.071 0.929 13 C -0.143 4.143 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C 0.126 3.874 20 C -0.225 4.225 21 C -0.097 4.097 22 C -0.210 4.210 23 C -0.092 4.092 24 C -0.215 4.215 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.275 -12.597 -6.346 17.451 hybrid contribution 0.756 0.181 0.947 1.225 sum -9.520 -12.416 -5.399 16.551 Atomic orbital electron populations 1.21337 0.92574 1.01969 1.01713 1.22795 0.95201 0.95880 1.04160 0.86725 1.23761 1.03151 1.00980 0.95469 1.21556 0.87913 1.01135 0.90831 0.86478 1.46211 1.22184 1.10480 1.51403 1.21795 0.97292 0.81472 1.00030 1.22148 0.97649 1.01193 0.95677 1.19036 0.95546 0.89729 0.97037 1.21175 1.26282 0.96389 1.11908 0.92869 1.25005 0.96857 0.95760 0.96711 1.69945 1.43321 1.01288 1.38951 0.86674 0.81168 0.77041 0.83228 1.20233 1.21254 1.20268 1.17819 0.91141 0.88557 0.89928 1.20609 1.01665 0.93689 1.06524 1.20796 0.94803 0.98022 0.96066 1.20813 0.97159 0.97663 1.05339 1.20884 0.98799 0.93030 0.96476 1.20857 0.95152 1.01393 1.04078 0.92636 0.91900 0.92322 0.88790 0.87764 0.90973 0.90908 0.92974 0.93025 0.96612 0.96688 0.92948 0.86593 0.86801 0.87009 0.86448 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.19 37.15 0.38 -0.80 16 2 C -0.16 -2.05 5.62 -90.59 -0.51 -2.56 16 3 H 0.11 1.67 6.11 -51.93 -0.32 1.35 16 4 C -0.19 -2.56 9.84 -26.70 -0.26 -2.82 16 5 C 0.09 1.20 5.61 -67.94 -0.38 0.82 16 6 H 0.12 1.35 6.53 -51.92 -0.34 1.02 16 7 N -0.60 -9.20 2.94 -164.19 -0.48 -9.68 16 8 C 0.12 1.98 4.58 -4.04 -0.02 1.97 16 9 C -0.13 -2.63 5.41 -26.73 -0.14 -2.77 16 10 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 11 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 12 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 15 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.23 3.54 6.54 -83.79 -0.55 2.99 16 20 C -0.20 -2.77 9.30 -39.38 -0.37 -3.14 16 21 C -0.08 -0.98 10.04 -39.61 -0.40 -1.37 16 22 C -0.19 -2.41 10.04 -39.55 -0.40 -2.81 16 23 C -0.07 -1.01 10.04 -39.61 -0.40 -1.41 16 24 C -0.19 -3.03 9.12 -39.39 -0.36 -3.39 16 25 H 0.05 0.49 7.90 -51.93 -0.41 0.08 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 1.05 8.05 -51.92 -0.42 0.63 16 29 H 0.10 1.62 6.12 -51.93 -0.32 1.30 16 30 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 31 H 0.07 1.21 6.00 -51.93 -0.31 0.90 16 32 H 0.05 1.07 5.90 -51.93 -0.31 0.77 16 33 H 0.05 1.10 8.07 -51.93 -0.42 0.69 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.12 1.40 6.16 -52.49 -0.32 1.08 16 38 H 0.11 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.11 1.17 8.06 -52.48 -0.42 0.74 16 40 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.13 2.09 6.24 -52.48 -0.33 1.77 16 LS Contribution 329.28 15.07 4.96 4.96 Total: -1.00 -29.99 329.28 -10.08 -40.07 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.33 Total: 2.26 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -3.95 Total: -28.29 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.25 Total: -35.78 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.99 -10.08 -40.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411920559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.391 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds