Wall clock time and date at job start Mon Mar 30 2020 06:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 115.56253 * 2 1 4 4 C 1.53073 * 117.49932 * 145.70626 * 2 1 3 5 5 C 1.52993 * 59.98525 * 107.48942 * 4 2 1 6 6 H 1.09010 * 117.49781 * 252.50401 * 5 4 2 7 7 N 1.46498 * 117.50079 * 107.50926 * 5 4 2 8 8 C 1.46506 * 119.99726 * 294.03507 * 7 5 4 9 9 C 1.53001 * 109.47203 * 89.99747 * 8 7 5 10 10 C 1.52991 * 109.47080 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47355 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99948 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00335 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00018 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00024 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47185 * 60.00253 * 15 13 11 17 17 H 1.48497 * 109.47301 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47334 * 300.00532 * 15 13 11 19 19 C 1.39673 * 120.00349 * 114.03302 * 7 5 4 20 20 C 1.38905 * 120.07151 * 4.88839 * 19 7 5 21 21 C 1.38112 * 119.92033 * 179.76941 * 20 19 7 22 22 C 1.38283 * 120.07400 * 0.50579 * 21 20 19 23 23 C 1.38284 * 120.15032 * 359.73896 * 22 21 20 24 24 C 1.38101 * 120.07242 * 0.02562 * 23 22 21 25 25 H 1.09004 * 109.46786 * 205.69183 * 1 2 3 26 26 H 1.09006 * 109.47059 * 325.68884 * 1 2 3 27 27 H 1.08994 * 109.47323 * 85.69071 * 1 2 3 28 28 H 1.09008 * 117.49206 * 0.02562 * 4 2 1 29 29 H 1.09002 * 117.51673 * 214.96512 * 4 2 1 30 30 H 1.08998 * 109.47253 * 210.00079 * 8 7 5 31 31 H 1.08999 * 109.47170 * 329.99895 * 8 7 5 32 32 H 1.08993 * 109.46858 * 300.00136 * 9 8 7 33 33 H 1.08999 * 109.46937 * 60.00005 * 9 8 7 34 34 H 1.08998 * 109.47476 * 300.00394 * 10 9 8 35 35 H 1.09007 * 109.46906 * 60.00561 * 10 9 8 36 36 H 0.96998 * 120.00321 * 179.97438 * 14 13 11 37 37 H 1.07997 * 120.04186 * 359.97438 * 20 19 7 38 38 H 1.07999 * 119.95751 * 180.24983 * 21 20 19 39 39 H 1.08008 * 119.92088 * 179.76803 * 22 21 20 40 40 H 1.07998 * 119.95808 * 179.97438 * 23 22 21 41 41 H 1.08006 * 120.03260 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2367 -1.1217 0.7650 5 6 2.2365 -1.1210 -0.7649 6 1 1.6112 -1.8583 -1.2685 7 7 3.4932 -0.7906 -1.4414 8 6 4.0582 0.5557 -1.3206 9 6 4.9926 0.6100 -0.1103 10 6 5.5831 2.0158 0.0154 11 6 6.5029 2.0695 1.2079 12 1 6.6518 1.1889 1.8151 13 6 7.1553 3.2426 1.5231 14 7 6.9744 4.3148 0.7835 15 14 8.2960 3.3089 3.0009 16 1 9.3937 2.3246 2.8234 17 1 8.8691 4.6734 3.1230 18 1 7.5318 2.9815 4.2313 19 6 4.1528 -1.7592 -2.2014 20 6 3.5693 -3.0038 -2.4009 21 6 4.2221 -3.9576 -3.1569 22 6 5.4600 -3.6782 -3.7064 23 6 6.0460 -2.4419 -3.5055 24 6 5.3965 -1.4820 -2.7546 25 1 -0.3633 -0.9261 0.4456 26 1 -0.3633 0.8489 0.5793 27 1 -0.3634 0.0772 -1.0247 28 1 1.6113 -1.8596 1.2677 29 1 3.1720 -0.8764 1.2683 30 1 4.6190 0.7968 -2.2237 31 1 3.2521 1.2776 -1.1899 32 1 4.4318 0.3690 0.7927 33 1 5.7987 -0.1119 -0.2410 34 1 6.1439 2.2565 -0.8877 35 1 4.7771 2.7380 0.1460 36 1 7.4330 5.1402 1.0054 37 1 2.6048 -3.2244 -1.9680 38 1 3.7671 -4.9241 -3.3157 39 1 5.9700 -4.4272 -4.2941 40 1 7.0130 -2.2272 -3.9357 41 1 5.8546 -0.5164 -2.5985 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411920559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:09 Heat of formation + Delta-G solvation = 29.408729 kcal Electronic energy + Delta-G solvation = -19077.873411 eV Core-core repulsion = 16343.357092 eV Total energy + Delta-G solvation = -2734.516318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.84087 -38.92008 -36.48270 -35.20574 -33.39656 -31.70710 -30.29118 -29.25470 -27.90931 -25.30236 -23.88377 -22.92270 -22.05228 -21.73538 -20.64587 -18.78745 -18.48767 -17.18674 -16.64125 -16.33231 -15.68757 -15.50493 -15.13997 -14.87050 -14.49552 -14.42681 -14.10789 -14.07931 -13.70630 -13.59683 -13.13958 -13.08724 -12.75090 -12.64589 -12.49452 -12.24956 -12.19676 -11.93150 -11.73238 -11.44414 -11.31611 -11.20473 -10.85002 -10.58211 -10.39634 -9.75647 -8.25388 -8.08784 -6.34431 0.60525 0.76703 1.36741 1.39496 1.47663 2.08005 2.38428 2.81344 3.09635 3.10074 3.72907 3.85174 3.93580 3.98285 4.19526 4.20902 4.31313 4.42310 4.44565 4.57473 4.59852 4.68954 4.74016 4.75590 4.92175 4.94402 4.96432 5.02127 5.08938 5.19881 5.22339 5.22777 5.40915 5.44752 5.50711 5.66619 5.68884 5.79944 5.81498 6.08423 6.20279 6.40560 6.67468 6.80632 7.34632 8.88160 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.005444 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.347982 B = 5142.413194 C = 6391.024969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.162 4.162 3 H 0.088 0.912 4 C -0.197 4.197 5 C 0.089 3.911 6 H 0.143 0.857 7 N -0.602 5.602 8 C 0.131 3.869 9 C -0.106 4.106 10 C 0.030 3.970 11 C -0.544 4.544 12 H 0.052 0.948 13 C 0.004 3.996 14 N -0.930 5.930 15 Si 0.962 3.038 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.267 1.267 19 C 0.206 3.794 20 C -0.204 4.204 21 C -0.076 4.076 22 C -0.188 4.188 23 C -0.083 4.083 24 C -0.220 4.220 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.038 0.962 34 H -0.008 1.008 35 H -0.005 1.005 36 H 0.265 0.735 37 H 0.135 0.865 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 -15.266 -6.261 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.181 4.181 3 H 0.106 0.894 4 C -0.236 4.236 5 C -0.016 4.016 6 H 0.160 0.840 7 N -0.309 5.309 8 C 0.007 3.993 9 C -0.145 4.145 10 C -0.007 4.007 11 C -0.582 4.582 12 H 0.071 0.929 13 C -0.194 4.194 14 N -0.570 5.570 15 Si 0.786 3.214 16 H -0.194 1.194 17 H -0.204 1.204 18 H -0.192 1.192 19 C 0.105 3.895 20 C -0.226 4.226 21 C -0.094 4.094 22 C -0.208 4.208 23 C -0.102 4.102 24 C -0.242 4.242 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.138 0.862 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.011 0.989 35 H 0.014 0.986 36 H 0.073 0.927 37 H 0.153 0.847 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.234 -14.948 -6.204 19.702 hybrid contribution 1.078 0.863 0.848 1.620 sum -10.156 -14.086 -5.356 18.173 Atomic orbital electron populations 1.21326 0.90054 1.03002 1.02564 1.22811 0.97018 0.94442 1.03787 0.89358 1.23740 1.02385 1.01959 0.95527 1.21832 0.87199 1.01847 0.90698 0.83959 1.46129 1.23051 1.09607 1.52122 1.21407 0.96636 0.83280 0.97938 1.21854 0.97665 0.97550 0.97420 1.18903 0.94450 0.92144 0.95238 1.21581 1.27137 0.96678 1.12842 0.92930 1.25923 0.98437 0.95244 0.99822 1.70070 1.44319 1.01907 1.40709 0.85553 0.78994 0.77432 0.79413 1.19404 1.20436 1.19229 1.18064 0.91377 0.89468 0.90631 1.20889 1.02430 0.92856 1.06407 1.21227 0.94495 0.99015 0.94693 1.21187 0.97341 0.97422 1.04814 1.21124 0.99422 0.93382 0.96232 1.20880 0.96113 1.01277 1.05957 0.90870 0.91747 0.91399 0.86186 0.90819 0.91594 0.90579 0.93137 0.94323 0.98946 0.98633 0.92659 0.84690 0.83457 0.84302 0.85241 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 10.19 71.98 0.73 -1.26 16 2 C -0.16 -4.00 5.62 -10.77 -0.06 -4.06 16 3 H 0.09 2.66 6.11 -2.39 -0.01 2.65 16 4 C -0.20 -5.02 9.84 30.62 0.30 -4.72 16 5 C 0.09 2.23 5.61 44.99 0.25 2.49 16 6 H 0.14 2.86 6.53 -2.38 -0.02 2.84 16 7 N -0.60 -18.70 2.94 -673.37 -1.98 -20.68 16 8 C 0.13 4.71 4.58 86.38 0.40 5.11 16 9 C -0.11 -4.60 5.41 30.59 0.17 -4.44 16 10 C 0.03 1.63 4.97 29.84 0.15 1.78 16 11 C -0.54 -31.89 9.11 25.60 0.23 -31.66 16 12 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 13 C 0.00 0.23 5.46 84.66 0.46 0.69 16 14 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 15 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 C 0.21 6.33 6.54 38.21 0.25 6.58 16 20 C -0.20 -5.10 9.30 22.40 0.21 -4.90 16 21 C -0.08 -1.65 10.04 22.25 0.22 -1.42 16 22 C -0.19 -4.28 10.04 22.29 0.22 -4.06 16 23 C -0.08 -2.25 10.04 22.25 0.22 -2.03 16 24 C -0.22 -7.10 9.12 22.40 0.20 -6.89 16 25 H 0.07 1.06 7.90 -2.38 -0.02 1.04 16 26 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.12 2.39 8.05 -2.38 -0.02 2.37 16 29 H 0.07 2.35 6.12 -2.39 -0.01 2.33 16 30 H 0.07 2.44 6.43 -2.39 -0.02 2.42 16 31 H 0.08 2.68 6.00 -2.39 -0.01 2.66 16 32 H 0.05 2.19 5.90 -2.39 -0.01 2.17 16 33 H 0.04 1.75 8.07 -2.39 -0.02 1.73 16 34 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 36 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.14 2.79 6.16 -2.91 -0.02 2.77 16 38 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 39 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 40 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.10 3.73 6.24 -2.91 -0.02 3.71 16 Total: -1.00 -66.13 329.28 5.30 -60.83 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 1.00 Total: 18.36 kcal Atomic # 6 Polarization: -52.76 SS G_CDS: 3.97 Total: -48.80 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -1.69 Total: -77.49 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -66.13 5.30 -60.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411920559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.238 kcal (2) G-P(sol) polarization free energy of solvation -66.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds