Wall clock time and date at job start Mon Mar 30 2020 06:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.50703 * 109.47230 * 240.00104 * 2 1 3 5 5 H 1.08005 * 119.99876 * 239.99714 * 4 2 1 6 6 C 1.37875 * 119.99989 * 59.99990 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99696 * 8 6 4 10 10 H 1.48506 * 109.47297 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46926 * 299.99488 * 8 6 4 12 12 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 13 13 C 1.46895 * 110.99680 * 58.95697 * 12 2 1 14 14 C 1.46896 * 111.00013 * 295.00378 * 12 2 1 15 15 C 1.50703 * 109.47119 * 190.00094 * 14 12 2 16 16 C 1.38234 * 119.99827 * 269.72807 * 15 14 12 17 17 C 1.38234 * 119.99905 * 179.74613 * 16 15 14 18 18 C 1.38232 * 119.99867 * 0.52458 * 17 16 15 19 19 C 1.50703 * 119.99880 * 179.76964 * 18 17 16 20 20 C 1.53007 * 117.49810 * 8.72764 * 19 18 17 21 21 C 1.52997 * 117.49877 * 300.06792 * 19 18 17 22 22 C 1.38236 * 120.00083 * 359.74517 * 18 17 16 23 23 C 1.38232 * 120.00098 * 89.99879 * 15 14 12 24 24 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 25 25 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 26 26 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 27 27 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47549 * 60.00387 * 13 12 2 29 29 H 1.09003 * 109.47360 * 180.02562 * 13 12 2 30 30 H 1.08996 * 109.47605 * 299.99824 * 13 12 2 31 31 H 1.09001 * 109.47061 * 309.99578 * 14 12 2 32 32 H 1.08997 * 109.47526 * 69.99455 * 14 12 2 33 33 H 1.08005 * 120.00057 * 359.97438 * 16 15 14 34 34 H 1.08006 * 119.99771 * 180.29205 * 17 16 15 35 35 H 1.09004 * 115.54946 * 154.39043 * 19 18 17 36 36 H 1.08994 * 117.49584 * 359.97438 * 20 19 18 37 37 H 1.08993 * 117.49815 * 145.01813 * 20 19 18 38 38 H 1.09001 * 117.49207 * 214.97894 * 21 19 18 39 39 H 1.08999 * 117.50038 * 359.96873 * 21 19 18 40 40 H 1.08001 * 119.99939 * 179.97438 * 22 18 17 41 41 H 1.08002 * 120.00176 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0078 10 1 1.8259 -0.4205 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 7 2.0197 -0.6925 1.1995 13 6 1.5284 -2.0761 1.2459 14 6 1.6487 0.0391 2.4181 15 6 2.3680 -0.5571 3.6006 16 6 1.7824 -1.5811 4.3212 17 6 2.4444 -2.1316 5.4027 18 6 3.6873 -1.6507 5.7701 19 6 4.4067 -2.2474 6.9522 20 6 3.8110 -3.5101 7.5781 21 6 3.7127 -2.1712 8.3136 22 6 4.2704 -0.6229 5.0528 23 6 3.6108 -0.0762 3.9679 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7081 1.1608 -3.4844 28 1 1.8764 -2.6150 0.3647 29 1 1.9054 -2.5656 2.1440 30 1 0.4386 -2.0743 1.2639 31 1 1.9297 1.0870 2.3125 32 1 0.5722 -0.0345 2.5726 33 1 0.8092 -1.9536 4.0371 34 1 1.9890 -2.9349 5.9629 35 1 5.4930 -2.1585 6.9353 36 1 2.8985 -3.9089 7.1351 37 1 4.5052 -4.2515 7.9733 38 1 4.3425 -2.0324 9.1924 39 1 2.7360 -1.6891 8.3544 40 1 5.2412 -0.2470 5.3401 41 1 4.0662 0.7271 3.4078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459340791.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:57 Heat of formation + Delta-G solvation = 52.752416 kcal Electronic energy + Delta-G solvation = -18968.233513 eV Core-core repulsion = 16234.729453 eV Total energy + Delta-G solvation = -2733.504060 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.67103 -37.59710 -36.25826 -32.89842 -31.03232 -30.69157 -28.39151 -26.70984 -25.15336 -24.18699 -22.83938 -22.17345 -21.88286 -19.99638 -19.14453 -16.72685 -16.16867 -15.58303 -15.19422 -14.79184 -14.54627 -14.24334 -13.96676 -13.37862 -13.10952 -13.06980 -12.65042 -12.39844 -11.91927 -11.69963 -11.54339 -11.20129 -11.09478 -10.95529 -10.82248 -10.73417 -10.61802 -10.51690 -10.43867 -10.35189 -9.99617 -9.77381 -8.88264 -8.65384 -8.37110 -8.19406 -7.10364 -5.99425 -4.03084 1.52585 1.65396 3.33931 3.37895 3.41196 3.60849 4.11024 4.43916 4.48899 4.73764 4.85840 4.98358 5.16297 5.17900 5.28937 5.31902 5.37908 5.45923 5.62829 5.68332 5.77901 5.90457 5.92848 6.03573 6.11686 6.27293 6.31523 6.36000 6.44893 6.66585 6.69742 6.77649 6.83886 6.92942 7.00020 7.13847 7.24863 7.50438 7.73764 7.85087 8.13717 8.40391 8.61721 9.02733 9.61840 11.07698 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.040289 B = 0.003886 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.810558 B = 7202.900197 C = 7346.514645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.210 3.790 3 H 0.039 0.961 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.528 5.528 13 C 0.032 3.968 14 C 0.087 3.913 15 C -0.061 4.061 16 C -0.111 4.111 17 C -0.124 4.124 18 C -0.066 4.066 19 C -0.111 4.111 20 C -0.179 4.179 21 C -0.173 4.173 22 C -0.116 4.116 23 C -0.097 4.097 24 H 0.007 0.993 25 H 0.088 0.912 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.016 0.984 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.117 0.883 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.427 -4.652 17.981 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.057 0.943 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.251 5.251 13 C -0.117 4.117 14 C -0.041 4.041 15 C -0.062 4.062 16 C -0.130 4.130 17 C -0.142 4.142 18 C -0.066 4.066 19 C -0.129 4.129 20 C -0.216 4.216 21 C -0.210 4.210 22 C -0.134 4.134 23 C -0.116 4.116 24 H 0.026 0.974 25 H 0.107 0.893 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.135 0.865 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.858 -4.537 17.786 18.756 hybrid contribution -0.629 -0.431 -0.895 1.176 sum 3.229 -4.968 16.890 17.900 Atomic orbital electron populations 1.22407 1.00921 0.99358 1.00516 1.19330 0.89730 0.94561 0.85935 0.94299 1.21089 1.30559 1.12479 0.89666 0.91992 1.24924 0.95247 0.95139 0.98974 1.69878 1.37047 1.23094 1.23477 0.86582 0.79248 0.79597 0.82098 1.20388 1.21411 1.20215 1.62388 1.59416 1.01944 1.01375 1.22289 0.96917 0.91303 1.01149 1.21041 0.96117 0.97951 0.88954 1.20011 0.94884 0.95634 0.95648 1.21028 0.99996 0.96554 0.95420 1.20897 0.95064 1.00351 0.97867 1.19004 0.94767 0.96882 0.95984 1.21004 0.98549 1.01324 0.92040 1.23063 1.03404 0.91033 1.04112 1.23021 1.02461 1.00754 0.94723 1.20871 0.99812 0.96701 0.95989 1.21031 0.94361 1.00119 0.96058 0.97392 0.89336 0.95084 0.92974 0.91019 0.93589 0.96521 0.90769 0.94779 0.86503 0.86583 0.87245 0.88361 0.88667 0.88731 0.88660 0.86496 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 8.28 37.15 0.31 -3.88 16 2 C 0.21 5.31 2.34 -68.86 -0.16 5.15 16 3 H 0.04 1.07 8.03 -51.93 -0.42 0.66 16 4 C -0.50 -13.74 7.94 -34.44 -0.27 -14.01 16 5 H 0.06 1.71 6.75 -52.48 -0.35 1.36 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.56 11.32 55.43 0.63 -24.93 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.53 -11.49 4.73 -237.74 -1.13 -12.62 16 13 C 0.03 0.65 8.56 60.06 0.51 1.16 16 14 C 0.09 1.62 4.56 -4.98 -0.02 1.60 16 15 C -0.06 -1.00 4.88 -104.62 -0.51 -1.51 16 16 C -0.11 -1.64 7.92 -39.58 -0.31 -1.96 16 17 C -0.12 -1.63 9.30 -39.58 -0.37 -1.99 16 18 C -0.07 -0.84 5.61 -104.62 -0.59 -1.43 16 19 C -0.11 -1.13 6.04 -91.77 -0.55 -1.69 16 20 C -0.18 -1.58 9.86 -26.69 -0.26 -1.84 16 21 C -0.17 -1.50 10.17 -26.69 -0.27 -1.77 16 22 C -0.12 -1.55 9.74 -39.58 -0.39 -1.93 16 23 C -0.10 -1.48 9.70 -39.59 -0.38 -1.86 16 24 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 26 H 0.03 0.73 6.39 -51.93 -0.33 0.40 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.07 1.55 6.53 -51.93 -0.34 1.22 16 29 H 0.05 0.83 5.91 -51.93 -0.31 0.53 16 30 H 0.02 0.33 6.28 -51.93 -0.33 0.00 16 31 H 0.07 1.37 7.94 -51.93 -0.41 0.96 16 32 H 0.03 0.63 6.88 -51.93 -0.36 0.27 16 33 H 0.12 1.64 8.00 -52.48 -0.42 1.22 16 34 H 0.12 1.29 6.03 -52.48 -0.32 0.97 16 35 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.10 0.87 6.18 -51.93 -0.32 0.54 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 321.83 15.07 4.85 4.85 Total: -1.00 -28.62 321.83 -10.28 -38.90 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.24 Total: 1.81 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -3.37 Total: -24.46 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.50 Total: -37.55 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.62 -10.28 -38.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459340791.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.652 kcal (2) G-P(sol) polarization free energy of solvation -28.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds