Wall clock time and date at job start Mon Mar 30 2020 06:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.50703 * 109.47230 * 240.00104 * 2 1 3 5 5 H 1.08005 * 119.99876 * 239.99714 * 4 2 1 6 6 C 1.37875 * 119.99989 * 59.99990 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99696 * 8 6 4 10 10 H 1.48506 * 109.47297 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46926 * 299.99488 * 8 6 4 12 12 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 13 13 C 1.46895 * 110.99680 * 58.95697 * 12 2 1 14 14 C 1.46896 * 111.00013 * 295.00378 * 12 2 1 15 15 C 1.50703 * 109.47119 * 190.00094 * 14 12 2 16 16 C 1.38234 * 119.99827 * 269.72807 * 15 14 12 17 17 C 1.38234 * 119.99905 * 179.74613 * 16 15 14 18 18 C 1.38232 * 119.99867 * 0.52458 * 17 16 15 19 19 C 1.50703 * 119.99880 * 179.76964 * 18 17 16 20 20 C 1.53007 * 117.49810 * 8.72764 * 19 18 17 21 21 C 1.52997 * 117.49877 * 300.06792 * 19 18 17 22 22 C 1.38236 * 120.00083 * 359.74517 * 18 17 16 23 23 C 1.38232 * 120.00098 * 89.99879 * 15 14 12 24 24 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 25 25 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 26 26 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 27 27 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47549 * 60.00387 * 13 12 2 29 29 H 1.09003 * 109.47360 * 180.02562 * 13 12 2 30 30 H 1.08996 * 109.47605 * 299.99824 * 13 12 2 31 31 H 1.09001 * 109.47061 * 309.99578 * 14 12 2 32 32 H 1.08997 * 109.47526 * 69.99455 * 14 12 2 33 33 H 1.08005 * 120.00057 * 359.97438 * 16 15 14 34 34 H 1.08006 * 119.99771 * 180.29205 * 17 16 15 35 35 H 1.09004 * 115.54946 * 154.39043 * 19 18 17 36 36 H 1.08994 * 117.49584 * 359.97438 * 20 19 18 37 37 H 1.08993 * 117.49815 * 145.01813 * 20 19 18 38 38 H 1.09001 * 117.49207 * 214.97894 * 21 19 18 39 39 H 1.08999 * 117.50038 * 359.96873 * 21 19 18 40 40 H 1.08001 * 119.99939 * 179.97438 * 22 18 17 41 41 H 1.08002 * 120.00176 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0078 10 1 1.8259 -0.4205 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 7 2.0197 -0.6925 1.1995 13 6 1.5284 -2.0761 1.2459 14 6 1.6487 0.0391 2.4181 15 6 2.3680 -0.5571 3.6006 16 6 1.7824 -1.5811 4.3212 17 6 2.4444 -2.1316 5.4027 18 6 3.6873 -1.6507 5.7701 19 6 4.4067 -2.2474 6.9522 20 6 3.8110 -3.5101 7.5781 21 6 3.7127 -2.1712 8.3136 22 6 4.2704 -0.6229 5.0528 23 6 3.6108 -0.0762 3.9679 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7081 1.1608 -3.4844 28 1 1.8764 -2.6150 0.3647 29 1 1.9054 -2.5656 2.1440 30 1 0.4386 -2.0743 1.2639 31 1 1.9297 1.0870 2.3125 32 1 0.5722 -0.0345 2.5726 33 1 0.8092 -1.9536 4.0371 34 1 1.9890 -2.9349 5.9629 35 1 5.4930 -2.1585 6.9353 36 1 2.8985 -3.9089 7.1351 37 1 4.5052 -4.2515 7.9733 38 1 4.3425 -2.0324 9.1924 39 1 2.7360 -1.6891 8.3544 40 1 5.2412 -0.2470 5.3401 41 1 4.0662 0.7271 3.4078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459340791.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:56 Heat of formation + Delta-G solvation = 38.347043 kcal Electronic energy + Delta-G solvation = -18968.858177 eV Core-core repulsion = 16234.729453 eV Total energy + Delta-G solvation = -2734.128724 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75707 -39.00328 -37.41582 -34.81663 -32.44374 -31.78520 -30.18764 -28.19619 -27.19801 -25.63160 -23.82157 -23.17389 -22.94140 -21.20816 -20.77260 -18.26105 -17.61849 -17.06010 -16.58204 -16.17964 -15.95629 -15.55476 -15.18401 -14.90840 -14.53995 -14.32456 -14.17519 -13.67220 -13.48656 -13.07877 -12.84778 -12.74940 -12.62087 -12.51284 -12.41982 -12.27543 -12.08969 -12.02967 -11.75145 -11.55273 -11.44157 -11.16990 -10.91737 -10.49443 -9.75212 -9.30138 -8.82542 -8.10741 -6.21885 0.42403 0.55996 1.42797 1.44367 1.52012 2.42805 2.68984 3.18147 3.20264 3.58407 3.70147 3.90605 4.03623 4.06035 4.16606 4.20135 4.31193 4.50075 4.56225 4.62871 4.65518 4.76122 4.78362 4.84850 4.85946 4.90200 5.00279 5.12641 5.16330 5.17584 5.20132 5.25413 5.30686 5.52050 5.58282 5.70134 5.74597 5.79038 5.82655 6.15497 6.18787 6.47873 6.72850 6.91349 7.47316 8.95213 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.040289 B = 0.003886 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.810558 B = 7202.900197 C = 7346.514645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.006 0.994 4 C -0.516 4.516 5 H 0.056 0.944 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.538 5.538 13 C 0.041 3.959 14 C 0.094 3.906 15 C -0.084 4.084 16 C -0.117 4.117 17 C -0.125 4.125 18 C -0.061 4.061 19 C -0.129 4.129 20 C -0.174 4.174 21 C -0.164 4.164 22 C -0.120 4.120 23 C -0.110 4.110 24 H 0.025 0.975 25 H 0.062 0.938 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.018 0.982 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.122 0.878 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.138 0.862 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.168 -6.226 19.716 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.024 0.976 4 C -0.555 4.555 5 H 0.074 0.926 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.262 5.262 13 C -0.107 4.107 14 C -0.034 4.034 15 C -0.084 4.084 16 C -0.136 4.136 17 C -0.143 4.143 18 C -0.062 4.062 19 C -0.147 4.147 20 C -0.211 4.211 21 C -0.201 4.201 22 C -0.137 4.137 23 C -0.129 4.129 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.138 0.862 36 H 0.116 0.884 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.109 0.891 40 H 0.156 0.844 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.599 -6.117 19.540 20.985 hybrid contribution -0.825 0.062 -1.308 1.548 sum 3.774 -6.055 18.232 19.578 Atomic orbital electron populations 1.22198 1.00290 0.99198 1.00054 1.19085 0.90077 0.92951 0.87115 0.97573 1.21353 1.30694 1.12493 0.90941 0.92621 1.25688 0.95381 0.95806 1.01807 1.70006 1.37824 1.24190 1.24089 0.85596 0.78702 0.78685 0.78544 1.19644 1.20931 1.19855 1.62261 1.59767 1.02657 1.01466 1.22207 0.96909 0.90334 1.01297 1.20973 0.96453 0.97392 0.88576 1.19828 0.95679 0.97240 0.95653 1.21120 1.00337 0.96226 0.95890 1.21156 0.95192 1.00593 0.97326 1.19356 0.94562 0.95985 0.96270 1.21067 0.99017 1.02809 0.91798 1.23167 1.03476 0.91053 1.03361 1.23089 1.02254 1.00431 0.94317 1.21116 1.00583 0.96727 0.95312 1.21115 0.94337 1.00461 0.96985 0.95592 0.91930 0.94916 0.92943 0.92840 0.91373 0.96384 0.91658 0.94756 0.86031 0.84383 0.86228 0.88412 0.87109 0.87004 0.89109 0.84432 0.86329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.80 8.28 71.98 0.60 -7.21 16 2 C 0.21 11.14 2.34 44.17 0.10 11.24 16 3 H 0.01 0.37 8.03 -2.38 -0.02 0.35 16 4 C -0.52 -28.93 7.94 25.60 0.20 -28.73 16 5 H 0.06 3.12 6.75 -2.91 -0.02 3.10 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -53.53 11.32 21.45 0.24 -53.29 16 8 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 N -0.54 -23.78 4.73 -906.06 -4.29 -28.07 16 13 C 0.04 1.64 8.56 127.69 1.09 2.73 16 14 C 0.09 3.52 4.56 85.56 0.39 3.91 16 15 C -0.08 -2.70 4.88 -19.87 -0.10 -2.79 16 16 C -0.12 -3.31 7.92 22.27 0.18 -3.13 16 17 C -0.13 -3.00 9.30 22.27 0.21 -2.79 16 18 C -0.06 -1.43 5.61 -19.87 -0.11 -1.54 16 19 C -0.13 -2.24 6.04 -11.54 -0.07 -2.31 16 20 C -0.17 -2.46 9.86 30.62 0.30 -2.16 16 21 C -0.16 -2.31 10.17 30.62 0.31 -2.00 16 22 C -0.12 -3.01 9.74 22.27 0.22 -2.79 16 23 C -0.11 -3.32 9.70 22.27 0.22 -3.10 16 24 H 0.03 1.13 6.75 -2.39 -0.02 1.12 16 25 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 26 H 0.03 1.55 6.39 -2.38 -0.02 1.54 16 27 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.05 2.32 6.53 -2.39 -0.02 2.31 16 29 H 0.07 2.42 5.91 -2.39 -0.01 2.40 16 30 H 0.02 0.71 6.28 -2.39 -0.02 0.69 16 31 H 0.06 2.51 7.94 -2.39 -0.02 2.49 16 32 H 0.03 1.27 6.88 -2.39 -0.02 1.25 16 33 H 0.12 3.24 8.00 -2.91 -0.02 3.22 16 34 H 0.14 2.66 6.03 -2.91 -0.02 2.64 16 35 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.10 1.39 6.18 -2.39 -0.01 1.38 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 41 H 0.12 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -61.32 321.83 2.97 -58.35 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 1.01 Total: 16.32 kcal Atomic # 6 Polarization: -43.55 SS G_CDS: 3.99 Total: -39.56 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -4.05 Total: -81.36 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -61.32 2.97 -58.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459340791.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.693 kcal (2) G-P(sol) polarization free energy of solvation -61.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds