Wall clock time and date at job start Mon Mar 30 2020 06:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46904 * 110.99974 * 306.04809 * 12 2 1 14 14 C 1.46899 * 110.99859 * 69.99981 * 12 2 1 15 15 C 1.50700 * 109.47085 * 170.00077 * 14 12 2 16 16 C 1.38232 * 120.00206 * 269.72917 * 15 14 12 17 17 C 1.38235 * 120.00483 * 179.74395 * 16 15 14 18 18 C 1.38235 * 119.99321 * 0.52589 * 17 16 15 19 19 C 1.50704 * 119.99476 * 179.77047 * 18 17 16 20 20 C 1.52995 * 117.50101 * 8.72460 * 19 18 17 21 21 C 1.52995 * 117.49812 * 300.06135 * 19 18 17 22 22 C 1.38230 * 120.00336 * 359.74561 * 18 17 16 23 23 C 1.38230 * 120.00232 * 359.97438 * 22 18 17 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47009 * 60.00040 * 13 12 2 29 29 H 1.08999 * 109.47192 * 180.02562 * 13 12 2 30 30 H 1.09002 * 109.46724 * 300.00378 * 13 12 2 31 31 H 1.09006 * 109.47401 * 289.99825 * 14 12 2 32 32 H 1.09000 * 109.47534 * 50.00268 * 14 12 2 33 33 H 1.08006 * 119.99537 * 359.97438 * 16 15 14 34 34 H 1.07996 * 119.99940 * 180.29434 * 17 16 15 35 35 H 1.09008 * 115.54644 * 154.39597 * 19 18 17 36 36 H 1.09001 * 117.50030 * 0.02562 * 20 19 18 37 37 H 1.09001 * 117.50013 * 145.02158 * 20 19 18 38 38 H 1.09006 * 117.49781 * 214.97897 * 21 19 18 39 39 H 1.08997 * 117.50433 * 359.97438 * 21 19 18 40 40 H 1.07996 * 120.00098 * 179.97438 * 22 18 17 41 41 H 1.07997 * 120.00622 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3080 14 6 1.7529 0.0974 -2.4090 15 6 2.4774 -0.5160 -3.5795 16 6 3.7634 -0.1116 -3.8854 17 6 4.4299 -0.6780 -4.9558 18 6 3.8063 -1.6411 -5.7269 19 6 4.5311 -2.2549 -6.8970 20 6 6.0164 -1.9260 -7.0594 21 6 4.9882 -1.3167 -8.0158 22 6 2.5183 -2.0414 -5.4245 23 6 1.8539 -1.4792 -4.3506 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1611 3.4845 28 1 0.3490 -1.9547 -1.3696 29 1 1.8139 -2.5259 -2.2043 30 1 1.7058 -2.6220 -0.4304 31 1 0.6813 0.1055 -2.6088 32 1 2.1025 1.1191 -2.2603 33 1 4.2487 0.6443 -3.2857 34 1 5.4364 -0.3655 -5.1918 35 1 4.2030 -3.2548 -7.1812 36 1 6.4696 -1.2660 -6.3197 37 1 6.6655 -2.7093 -7.4508 38 1 4.9613 -1.6996 -9.0361 39 1 4.7644 -0.2557 -7.9059 40 1 2.0310 -2.7935 -6.0272 41 1 0.8475 -1.7916 -4.1145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459340798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:59 Heat of formation + Delta-G solvation = 52.737283 kcal Electronic energy + Delta-G solvation = -18956.398165 eV Core-core repulsion = 16222.893448 eV Total energy + Delta-G solvation = -2733.504716 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.66804 -37.59685 -36.24994 -32.89709 -31.09015 -30.65520 -28.35137 -26.73247 -25.20761 -24.05596 -22.96663 -22.27702 -21.70758 -20.00409 -19.15199 -16.73049 -16.16986 -15.56156 -15.17362 -14.80305 -14.58904 -14.22368 -13.95644 -13.36650 -13.16401 -13.02481 -12.61368 -12.45671 -11.94886 -11.70870 -11.50708 -11.15545 -11.04446 -11.00136 -10.86898 -10.70323 -10.62595 -10.50232 -10.39880 -10.37153 -10.01899 -9.77121 -8.88603 -8.65552 -8.36872 -8.19434 -7.10569 -5.99025 -4.02370 1.52401 1.65537 3.32306 3.38827 3.43485 3.61351 4.11183 4.44427 4.49074 4.74400 4.86558 5.00393 5.15444 5.21041 5.23544 5.32433 5.39739 5.45813 5.63124 5.68371 5.76757 5.91703 5.94338 6.03985 6.10952 6.26533 6.30995 6.35571 6.43406 6.66408 6.69102 6.77596 6.83503 6.91479 7.00010 7.13702 7.24790 7.48136 7.73167 7.86677 8.15256 8.40270 8.61606 9.03875 9.62534 11.08099 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037015 B = 0.003950 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.275071 B = 7087.470713 C = 7351.279075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.210 3.790 3 H 0.038 0.962 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.528 5.528 13 C 0.031 3.969 14 C 0.087 3.913 15 C -0.061 4.061 16 C -0.097 4.097 17 C -0.123 4.123 18 C -0.066 4.066 19 C -0.112 4.112 20 C -0.179 4.179 21 C -0.173 4.173 22 C -0.117 4.117 23 C -0.112 4.112 24 H 0.006 0.994 25 H 0.032 0.968 26 H 0.088 0.912 27 H 0.260 0.740 28 H 0.017 0.983 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.624 -3.857 -17.768 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.056 0.944 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.213 1.213 12 N -0.251 5.251 13 C -0.117 4.117 14 C -0.041 4.041 15 C -0.062 4.062 16 C -0.115 4.115 17 C -0.141 4.141 18 C -0.066 4.066 19 C -0.130 4.130 20 C -0.216 4.216 21 C -0.210 4.210 22 C -0.135 4.135 23 C -0.130 4.130 24 H 0.025 0.975 25 H 0.051 0.949 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.134 0.866 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.059 -3.780 -17.555 18.657 hybrid contribution -0.680 -0.391 0.855 1.160 sum 4.379 -4.171 -16.700 17.762 Atomic orbital electron populations 1.22411 1.00878 0.99422 1.00463 1.19338 0.89760 0.94476 0.86009 0.94381 1.21111 1.30388 1.12413 0.89589 0.91979 1.24930 0.95302 0.95146 0.98984 1.69888 1.37232 1.23086 1.23348 0.86523 0.79265 0.79265 0.82516 1.20854 1.19838 1.21321 1.62388 1.58803 1.02372 1.01527 1.22299 0.96280 0.92030 1.01107 1.21046 0.96488 0.97379 0.89141 1.20006 0.94646 0.95938 0.95586 1.21024 0.94169 0.99950 0.96387 1.20956 0.99616 0.97458 0.96033 1.19003 0.94301 0.97435 0.95877 1.20997 0.96214 0.99406 0.96355 1.23067 0.91701 1.03831 1.02966 1.23022 1.03733 0.99268 0.94939 1.20806 0.94295 1.00569 0.97825 1.21036 0.99984 0.96828 0.95183 0.97503 0.94942 0.89336 0.93050 0.96412 0.93510 0.91158 0.94859 0.90750 0.85925 0.86464 0.87313 0.88270 0.88674 0.88755 0.88629 0.86622 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.22 37.16 0.31 -3.88 16 2 C 0.21 5.30 2.31 -68.87 -0.16 5.14 16 3 H 0.04 1.05 7.93 -51.93 -0.41 0.64 16 4 C -0.50 -13.68 7.97 -34.44 -0.27 -13.95 16 5 H 0.06 1.73 7.10 -52.49 -0.37 1.36 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.58 11.32 55.43 0.63 -24.96 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.53 -11.48 4.69 -237.72 -1.12 -12.59 16 13 C 0.03 0.63 8.47 60.07 0.51 1.14 16 14 C 0.09 1.62 4.69 -4.98 -0.02 1.60 16 15 C -0.06 -1.00 4.89 -104.62 -0.51 -1.51 16 16 C -0.10 -1.47 9.70 -39.58 -0.38 -1.86 16 17 C -0.12 -1.64 9.30 -39.58 -0.37 -2.01 16 18 C -0.07 -0.84 5.61 -104.62 -0.59 -1.43 16 19 C -0.11 -1.14 6.04 -91.77 -0.55 -1.69 16 20 C -0.18 -1.59 9.86 -26.70 -0.26 -1.85 16 21 C -0.17 -1.51 10.17 -26.70 -0.27 -1.78 16 22 C -0.12 -1.54 9.74 -39.59 -0.39 -1.92 16 23 C -0.11 -1.64 7.90 -39.58 -0.31 -1.96 16 24 H 0.01 0.13 6.91 -51.93 -0.36 -0.22 16 25 H 0.03 0.76 6.33 -51.93 -0.33 0.43 16 26 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.02 0.35 6.21 -51.93 -0.32 0.03 16 29 H 0.05 0.84 5.89 -51.93 -0.31 0.54 16 30 H 0.07 1.51 6.86 -51.93 -0.36 1.16 16 31 H 0.03 0.61 7.00 -51.93 -0.36 0.25 16 32 H 0.07 1.38 7.87 -51.93 -0.41 0.97 16 33 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 34 H 0.12 1.34 6.02 -52.49 -0.32 1.02 16 35 H 0.11 1.00 8.14 -51.92 -0.42 0.58 16 36 H 0.10 0.89 6.18 -51.93 -0.32 0.57 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.12 1.64 7.98 -52.49 -0.42 1.22 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -28.70 322.39 -10.30 -39.00 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.27 Total: 1.70 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -3.37 Total: -24.48 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.49 Total: -37.55 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.70 -10.30 -39.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459340798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.738 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds