Wall clock time and date at job start Mon Mar 30 2020 06:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46904 * 110.99974 * 306.04809 * 12 2 1 14 14 C 1.46899 * 110.99859 * 69.99981 * 12 2 1 15 15 C 1.50700 * 109.47085 * 170.00077 * 14 12 2 16 16 C 1.38232 * 120.00206 * 269.72917 * 15 14 12 17 17 C 1.38235 * 120.00483 * 179.74395 * 16 15 14 18 18 C 1.38235 * 119.99321 * 0.52589 * 17 16 15 19 19 C 1.50704 * 119.99476 * 179.77047 * 18 17 16 20 20 C 1.52995 * 117.50101 * 8.72460 * 19 18 17 21 21 C 1.52995 * 117.49812 * 300.06135 * 19 18 17 22 22 C 1.38230 * 120.00336 * 359.74561 * 18 17 16 23 23 C 1.38230 * 120.00232 * 359.97438 * 22 18 17 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47009 * 60.00040 * 13 12 2 29 29 H 1.08999 * 109.47192 * 180.02562 * 13 12 2 30 30 H 1.09002 * 109.46724 * 300.00378 * 13 12 2 31 31 H 1.09006 * 109.47401 * 289.99825 * 14 12 2 32 32 H 1.09000 * 109.47534 * 50.00268 * 14 12 2 33 33 H 1.08006 * 119.99537 * 359.97438 * 16 15 14 34 34 H 1.07996 * 119.99940 * 180.29434 * 17 16 15 35 35 H 1.09008 * 115.54644 * 154.39597 * 19 18 17 36 36 H 1.09001 * 117.50030 * 0.02562 * 20 19 18 37 37 H 1.09001 * 117.50013 * 145.02158 * 20 19 18 38 38 H 1.09006 * 117.49781 * 214.97897 * 21 19 18 39 39 H 1.08997 * 117.50433 * 359.97438 * 21 19 18 40 40 H 1.07996 * 120.00098 * 179.97438 * 22 18 17 41 41 H 1.07997 * 120.00622 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3080 14 6 1.7529 0.0974 -2.4090 15 6 2.4774 -0.5160 -3.5795 16 6 3.7634 -0.1116 -3.8854 17 6 4.4299 -0.6780 -4.9558 18 6 3.8063 -1.6411 -5.7269 19 6 4.5311 -2.2549 -6.8970 20 6 6.0164 -1.9260 -7.0594 21 6 4.9882 -1.3167 -8.0158 22 6 2.5183 -2.0414 -5.4245 23 6 1.8539 -1.4792 -4.3506 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1611 3.4845 28 1 0.3490 -1.9547 -1.3696 29 1 1.8139 -2.5259 -2.2043 30 1 1.7058 -2.6220 -0.4304 31 1 0.6813 0.1055 -2.6088 32 1 2.1025 1.1191 -2.2603 33 1 4.2487 0.6443 -3.2857 34 1 5.4364 -0.3655 -5.1918 35 1 4.2030 -3.2548 -7.1812 36 1 6.4696 -1.2660 -6.3197 37 1 6.6655 -2.7093 -7.4508 38 1 4.9613 -1.6996 -9.0361 39 1 4.7644 -0.2557 -7.9059 40 1 2.0310 -2.7935 -6.0272 41 1 0.8475 -1.7916 -4.1145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459340798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:59 Heat of formation + Delta-G solvation = 38.304205 kcal Electronic energy + Delta-G solvation = -18957.024030 eV Core-core repulsion = 16222.893448 eV Total energy + Delta-G solvation = -2734.130582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.75434 -39.00048 -37.41293 -34.81931 -32.46863 -31.79512 -30.12691 -28.18931 -27.28064 -25.53879 -23.95896 -23.13780 -22.87759 -21.19361 -20.79558 -18.27254 -17.60710 -17.08016 -16.54528 -16.15380 -16.01150 -15.51825 -15.25052 -14.85380 -14.52495 -14.34666 -14.16902 -13.68612 -13.53680 -13.07795 -12.80139 -12.72252 -12.60057 -12.57358 -12.36544 -12.26028 -12.11391 -12.02431 -11.78641 -11.56101 -11.43973 -11.16639 -10.92116 -10.49532 -9.75261 -9.30060 -8.82483 -8.10585 -6.21549 0.42178 0.56158 1.42165 1.43077 1.54053 2.42915 2.68921 3.18141 3.20134 3.59122 3.68610 3.94446 3.98855 4.07903 4.16172 4.20812 4.32263 4.49111 4.55088 4.61225 4.65602 4.73506 4.80475 4.85338 4.86464 4.90040 5.00474 5.12401 5.16724 5.17909 5.20091 5.24563 5.30491 5.50523 5.57784 5.69881 5.74642 5.79464 5.82566 6.15538 6.20758 6.48770 6.72309 6.91574 7.47642 8.95377 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037015 B = 0.003950 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.275071 B = 7087.470713 C = 7351.279075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.006 0.994 4 C -0.513 4.513 5 H 0.054 0.946 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.271 1.271 11 H -0.283 1.283 12 N -0.539 5.539 13 C 0.040 3.960 14 C 0.094 3.906 15 C -0.083 4.083 16 C -0.111 4.111 17 C -0.126 4.126 18 C -0.062 4.062 19 C -0.127 4.127 20 C -0.176 4.176 21 C -0.164 4.164 22 C -0.118 4.118 23 C -0.117 4.117 24 H 0.024 0.976 25 H 0.034 0.966 26 H 0.062 0.938 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.135 0.865 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.141 0.859 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.391 -5.376 -19.497 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.024 0.976 4 C -0.552 4.552 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.195 1.195 11 H -0.209 1.209 12 N -0.262 5.262 13 C -0.108 4.108 14 C -0.034 4.034 15 C -0.084 4.084 16 C -0.130 4.130 17 C -0.144 4.144 18 C -0.062 4.062 19 C -0.145 4.145 20 C -0.213 4.213 21 C -0.201 4.201 22 C -0.136 4.136 23 C -0.136 4.136 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.153 0.847 35 H 0.140 0.860 36 H 0.113 0.887 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.159 0.841 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.828 -5.303 -19.302 20.849 hybrid contribution -0.873 0.093 1.274 1.548 sum 4.955 -5.211 -18.028 19.409 Atomic orbital electron populations 1.22203 1.00233 0.99315 0.99979 1.19092 0.90117 0.92853 0.87173 0.97623 1.21353 1.30534 1.12377 0.90915 0.92801 1.25690 0.95431 0.95814 1.01799 1.70012 1.37968 1.24155 1.24010 0.85535 0.78792 0.78252 0.78918 1.20095 1.19543 1.20882 1.62260 1.59121 1.03148 1.01664 1.22224 0.96378 0.91000 1.01240 1.20976 0.96890 0.96756 0.88767 1.19826 0.95297 0.97616 0.95644 1.21098 0.94142 1.00394 0.97320 1.21164 1.00369 0.97436 0.95390 1.19360 0.94270 0.96453 0.96123 1.21073 0.97058 1.00281 0.96101 1.23163 0.91183 1.04110 1.02843 1.23086 1.02763 0.98717 0.95494 1.21106 0.94457 1.00676 0.97353 1.21140 1.00356 0.96502 0.95562 0.95731 0.94690 0.91943 0.92957 0.96132 0.91290 0.92980 0.94762 0.91732 0.86503 0.84708 0.85980 0.88652 0.87073 0.86896 0.89207 0.84088 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.79 8.22 71.98 0.59 -7.20 16 2 C 0.21 11.13 2.31 44.17 0.10 11.23 16 3 H 0.01 0.34 7.93 -2.39 -0.02 0.32 16 4 C -0.51 -28.84 7.97 25.60 0.20 -28.63 16 5 H 0.05 3.05 7.10 -2.91 -0.02 3.03 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -53.54 11.32 21.45 0.24 -53.30 16 8 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 N -0.54 -23.80 4.69 -906.02 -4.25 -28.05 16 13 C 0.04 1.59 8.47 127.69 1.08 2.67 16 14 C 0.09 3.53 4.69 85.56 0.40 3.93 16 15 C -0.08 -2.69 4.89 -19.86 -0.10 -2.79 16 16 C -0.11 -3.36 9.70 22.27 0.22 -3.15 16 17 C -0.13 -3.19 9.30 22.27 0.21 -2.98 16 18 C -0.06 -1.43 5.61 -19.87 -0.11 -1.55 16 19 C -0.13 -2.20 6.04 -11.54 -0.07 -2.27 16 20 C -0.18 -2.60 9.86 30.62 0.30 -2.29 16 21 C -0.16 -2.35 10.17 30.62 0.31 -2.03 16 22 C -0.12 -2.82 9.74 22.27 0.22 -2.60 16 23 C -0.12 -3.28 7.90 22.27 0.18 -3.10 16 24 H 0.02 1.07 6.91 -2.38 -0.02 1.06 16 25 H 0.03 1.66 6.33 -2.39 -0.02 1.64 16 26 H 0.06 3.42 6.07 -2.39 -0.01 3.40 16 27 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.02 0.80 6.21 -2.39 -0.01 0.78 16 29 H 0.07 2.43 5.89 -2.39 -0.01 2.41 16 30 H 0.05 2.25 6.86 -2.39 -0.02 2.23 16 31 H 0.03 1.26 7.00 -2.38 -0.02 1.25 16 32 H 0.06 2.49 7.87 -2.39 -0.02 2.47 16 33 H 0.12 3.55 8.06 -2.91 -0.02 3.53 16 34 H 0.14 2.85 6.02 -2.91 -0.02 2.83 16 35 H 0.12 1.80 8.14 -2.38 -0.02 1.79 16 36 H 0.10 1.48 6.18 -2.39 -0.01 1.46 16 37 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.11 1.21 8.14 -2.38 -0.02 1.20 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.12 3.24 7.98 -2.91 -0.02 3.21 16 Total: -1.00 -61.52 322.39 3.00 -58.52 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 1.00 Total: 16.16 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 3.98 Total: -39.70 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -4.01 Total: -81.35 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -61.52 3.00 -58.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459340798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.823 kcal (2) G-P(sol) polarization free energy of solvation -61.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds