Wall clock time and date at job start Mon Mar 30 2020 06:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30556 * 1 3 3 Si 1.86800 * 119.99932 * 2 1 4 4 H 1.48498 * 109.47233 * 274.98113 * 3 2 1 5 5 H 1.48503 * 109.47123 * 34.98544 * 3 2 1 6 6 H 1.48502 * 109.47096 * 154.97983 * 3 2 1 7 7 C 1.40301 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99758 * 173.84090 * 7 2 1 9 9 C 1.41539 * 119.99700 * 354.11856 * 7 2 1 10 10 O 1.21948 * 120.00311 * 6.18711 * 9 7 2 11 11 C 1.47106 * 119.99464 * 186.19412 * 9 7 2 12 12 C 1.39706 * 123.16414 * 359.97438 * 11 9 7 13 13 C 1.32971 * 113.96454 * 179.97438 * 12 11 9 14 14 S 1.75650 * 110.25195 * 359.97438 * 13 12 11 15 15 C 1.37226 * 123.15840 * 179.70660 * 11 9 7 16 16 Br 1.89102 * 124.88648 * 359.97438 * 15 11 9 17 17 H 0.97001 * 119.99762 * 0.02562 * 1 2 3 18 18 H 1.08000 * 123.02027 * 359.97438 * 12 11 9 19 19 H 1.07997 * 124.87611 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 2.3818 2.1072 -1.3948 5 1 1.4936 2.6200 0.8028 6 1 3.5858 1.4121 0.5922 7 6 2.0070 -1.2151 0.0005 8 1 3.0823 -1.2178 -0.0998 9 6 1.3048 -2.4375 0.1267 10 8 0.0854 -2.4436 0.1214 11 6 2.0462 -3.7006 0.2644 12 6 3.4414 -3.7703 0.2782 13 6 3.9193 -5.0039 0.4121 14 16 2.6000 -6.1575 0.5299 15 6 1.4322 -4.9207 0.3966 16 35 -0.4390 -5.1923 0.4258 17 1 -0.4850 0.8401 -0.0004 18 1 4.0751 -2.9003 0.1883 19 1 4.9680 -5.2598 0.4446 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575464833.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:51 Heat of formation + Delta-G solvation = -5.954070 kcal Electronic energy + Delta-G solvation = -10035.402393 eV Core-core repulsion = 7884.193924 eV Total energy + Delta-G solvation = -2151.208469 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 259.925 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.86048 -35.40445 -32.69500 -30.96647 -28.01741 -27.03307 -23.54413 -20.65429 -18.51945 -17.15283 -15.88264 -15.39143 -14.35397 -13.27042 -13.19527 -12.59229 -12.28094 -11.97121 -11.57260 -11.33205 -10.92295 -10.80696 -10.35758 -10.19878 -10.11372 -9.43929 -8.97604 -8.06828 -7.71511 -7.33696 -6.29600 -4.90720 1.30600 1.76770 2.40302 2.67107 2.92520 3.11387 3.12020 3.16010 3.99327 4.46670 5.46870 5.74533 5.94536 6.24408 6.52837 6.76887 7.07142 7.21432 8.01008 8.76555 8.79978 10.29068 10.50681 Molecular weight = 259.92amu Principal moments of inertia in cm(-1) A = 0.031594 B = 0.009412 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.018542 B = 2974.074007 C = 3847.586079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.731 5.731 2 C 0.079 3.921 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.510 4.510 8 H 0.072 0.928 9 C 0.392 3.608 10 O -0.513 6.513 11 C -0.087 4.087 12 C -0.094 4.094 13 C -0.237 4.237 14 S 0.147 5.853 15 C -0.220 4.220 16 Br 0.016 6.984 17 H 0.274 0.726 18 H 0.151 0.849 19 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 -8.412 0.975 9.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.542 4.542 8 H 0.090 0.910 9 C 0.285 3.715 10 O -0.401 6.401 11 C -0.104 4.104 12 C -0.125 4.125 13 C -0.373 4.373 14 S 0.410 5.590 15 C -0.417 4.417 16 Br 0.100 6.900 17 H 0.085 0.915 18 H 0.169 0.831 19 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.976 -10.064 1.157 10.559 hybrid contribution 1.156 2.409 -0.165 2.677 sum 4.132 -7.655 0.993 8.756 Atomic orbital electron populations 1.69974 1.07480 1.28113 1.30432 1.25970 0.94646 1.00930 0.92862 0.86358 0.80572 0.81049 0.78998 1.19506 1.20091 1.18476 1.20803 0.95222 0.91582 1.46628 0.90955 1.17676 0.88672 0.84800 0.80382 1.90634 1.14117 1.87017 1.48311 1.21371 0.93905 0.97456 0.97681 1.20391 0.94607 0.97390 1.00115 1.25579 1.02169 0.96700 1.12888 1.82570 0.94493 1.09933 1.72020 1.26069 0.96917 0.99771 1.18971 1.96561 1.00586 1.95334 1.97537 0.91471 0.83143 0.82119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.77 11.75 55.56 0.65 -20.11 13 2 C 0.08 2.11 5.49 -17.32 -0.10 2.01 13 3 Si 0.91 19.00 29.57 -169.99 -5.03 13.97 13 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 13 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 13 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 13 7 C -0.51 -13.81 8.90 -37.55 -0.33 -14.15 13 8 H 0.07 1.77 6.43 -52.49 -0.34 1.43 13 9 C 0.39 11.00 6.90 -34.73 -0.24 10.76 13 10 O -0.51 -15.81 13.11 4.97 0.07 -15.74 13 11 C -0.09 -2.06 5.85 -106.12 -0.62 -2.68 13 12 C -0.09 -1.83 9.59 -40.86 -0.39 -2.22 13 13 C -0.24 -3.80 11.16 28.91 0.32 -3.48 13 14 S 0.15 2.43 23.07 -107.50 -2.48 -0.05 13 15 C -0.22 -4.74 6.82 30.36 0.21 -4.53 13 16 Br 0.02 0.34 31.69 -68.01 -2.15 -1.82 13 17 H 0.27 6.99 8.29 -40.82 -0.34 6.65 13 18 H 0.15 2.72 6.78 -52.49 -0.36 2.36 13 19 H 0.16 1.96 8.06 -52.49 -0.42 1.53 13 LS Contribution 214.77 15.07 3.24 3.24 Total: -1.00 -31.01 214.77 -7.11 -38.11 By element: Atomic # 1 Polarization: -3.06 SS G_CDS: -0.25 Total: -3.31 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -1.15 Total: -14.28 kcal Atomic # 7 Polarization: -20.77 SS G_CDS: 0.65 Total: -20.11 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.07 Total: -15.74 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.48 Total: -0.05 kcal Atomic # 35 Polarization: 0.34 SS G_CDS: -2.15 Total: -1.82 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -31.01 -7.11 -38.11 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575464833.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.160 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds