Wall clock time and date at job start Mon Mar 30 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46718 * 2 1 4 4 N 1.46898 * 109.47139 * 240.00310 * 2 1 3 5 5 C 1.46897 * 111.00198 * 84.99631 * 4 2 1 6 6 C 1.50700 * 109.47186 * 179.97438 * 5 4 2 7 7 C 1.38644 * 119.74610 * 90.00161 * 6 5 4 8 8 C 1.37617 * 120.24683 * 179.97438 * 7 6 5 9 9 C 1.40722 * 119.74163 * 0.02562 * 8 7 6 10 10 C 1.41400 * 120.23930 * 180.02562 * 9 8 7 11 11 H 1.07993 * 119.99650 * 207.08963 * 10 9 8 12 12 C 1.39952 * 119.99944 * 27.09605 * 10 9 8 13 13 N 1.30821 * 119.99375 * 197.01393 * 12 10 9 14 14 Si 1.86794 * 120.00091 * 17.01160 * 12 10 9 15 15 H 1.48506 * 109.47143 * 264.88385 * 14 12 10 16 16 H 1.48498 * 109.47386 * 24.88342 * 14 12 10 17 17 H 1.48504 * 109.47024 * 144.88634 * 14 12 10 18 18 C 1.40710 * 119.51725 * 0.27255 * 9 8 7 19 19 C 1.37624 * 119.73900 * 359.40579 * 18 9 8 20 20 C 1.53004 * 109.47232 * 120.00256 * 2 1 3 21 21 H 1.08991 * 115.55189 * 154.27861 * 20 2 1 22 22 C 1.53004 * 117.49594 * 8.60648 * 20 2 1 23 23 C 1.52998 * 117.49477 * 299.98569 * 20 2 1 24 24 H 1.09005 * 117.50435 * 359.97438 * 23 20 2 25 25 C 1.53000 * 117.49636 * 214.97773 * 23 20 2 26 26 H 1.08994 * 109.47387 * 59.99839 * 1 2 3 27 27 H 1.09005 * 109.47210 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47019 * 299.99628 * 1 2 3 29 29 H 1.00904 * 110.99617 * 321.04171 * 4 2 1 30 30 H 1.09003 * 109.46824 * 59.99966 * 5 4 2 31 31 H 1.08995 * 109.47319 * 300.00526 * 5 4 2 32 32 H 1.08000 * 119.87590 * 0.02562 * 7 6 5 33 33 H 1.07996 * 120.12869 * 180.02562 * 8 7 6 34 34 H 0.97007 * 119.99784 * 179.97438 * 13 12 10 35 35 H 1.07993 * 120.13288 * 179.72219 * 18 9 8 36 36 H 1.08006 * 119.87149 * 180.31775 * 19 18 9 37 37 H 1.08998 * 117.49829 * 359.97438 * 22 20 2 38 38 H 1.08998 * 117.49229 * 145.00129 * 22 20 2 39 39 H 1.08998 * 109.47071 * 60.00430 * 25 23 20 40 40 H 1.09001 * 109.47384 * 180.02562 * 25 23 20 41 41 H 1.09003 * 109.47409 * 300.00180 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5885 -0.5214 -3.5557 7 6 1.6891 -1.1522 -4.4015 8 6 2.1399 -1.8341 -5.5086 9 6 3.5195 -1.8900 -5.7802 10 6 3.9942 -2.5873 -6.9151 11 1 4.9886 -3.0084 -6.9131 12 6 3.1753 -2.7315 -8.0409 13 7 3.4585 -3.6344 -8.9441 14 14 1.6783 -1.6347 -8.2536 15 1 0.4756 -2.3321 -7.7316 16 1 1.8812 -0.3692 -7.5036 17 1 1.4879 -1.3310 -9.6947 18 6 4.4235 -1.2514 -4.9114 19 6 3.9497 -0.5697 -3.8138 20 6 2.0401 -0.7213 1.2492 21 1 3.0320 -1.1649 1.1639 22 6 1.0104 -1.4539 2.1118 23 6 1.6360 -0.1494 2.6096 24 1 1.0072 0.7410 2.6146 25 6 2.6556 -0.2436 3.7465 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.4496 -1.4979 -1.4100 30 1 2.7588 1.0463 -2.1182 31 1 1.0871 0.6164 -2.5525 32 1 0.6307 -1.1075 -4.1912 33 1 1.4376 -2.3244 -6.1664 34 1 2.8907 -3.7347 -9.7243 35 1 5.4847 -1.2918 -5.1079 36 1 4.6413 -0.0744 -3.1484 37 1 -0.0304 -1.4216 1.7896 38 1 1.3251 -2.3794 2.5940 39 1 3.5625 0.2924 3.4666 40 1 2.2352 0.1996 4.6492 41 1 2.8953 -1.2903 3.9338 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576466240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:55 Heat of formation + Delta-G solvation = 28.572110 kcal Electronic energy + Delta-G solvation = -18559.944582 eV Core-core repulsion = 15825.391985 eV Total energy + Delta-G solvation = -2734.552597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.00488 -37.90044 -35.48475 -33.59487 -31.45420 -29.69126 -29.42192 -27.85778 -26.26717 -24.21485 -22.70552 -21.54826 -20.77344 -19.99995 -19.38869 -17.39206 -16.38810 -15.60551 -14.96890 -14.88346 -14.38484 -14.11994 -13.81459 -13.40644 -13.26141 -13.02713 -12.78793 -12.76692 -12.30982 -12.17917 -11.92014 -11.68319 -11.55045 -11.32366 -11.21201 -10.95194 -10.74650 -10.59047 -10.20564 -10.04319 -9.80618 -9.68100 -9.51675 -9.10221 -8.10750 -7.66799 -7.50492 -6.95115 -4.46809 2.57166 2.74427 3.10066 3.22131 3.32088 3.67750 3.98133 4.26821 4.55755 4.74177 4.81457 5.00317 5.08683 5.17592 5.25329 5.37600 5.47596 5.61723 5.63792 5.66247 5.73538 5.79434 5.80346 5.85985 5.95412 6.09582 6.13522 6.14656 6.16818 6.23703 6.33218 6.58164 6.86391 6.93119 7.20315 7.35836 7.46376 7.59187 7.73458 7.86482 7.91312 8.16468 8.36624 8.68498 8.81619 10.07331 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.040118 B = 0.003734 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.773776 B = 7496.716747 C = 7774.144881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.111 3.889 3 H 0.076 0.924 4 N -0.677 5.677 5 C 0.124 3.876 6 C -0.216 4.216 7 C -0.068 4.068 8 C -0.243 4.243 9 C 0.095 3.905 10 C -0.445 4.445 11 H 0.090 0.910 12 C 0.082 3.918 13 N -0.809 5.809 14 Si 0.917 3.083 15 H -0.272 1.272 16 H -0.243 1.243 17 H -0.294 1.294 18 C -0.213 4.213 19 C -0.058 4.058 20 C -0.129 4.129 21 H 0.111 0.889 22 C -0.184 4.184 23 C -0.158 4.158 24 H 0.099 0.901 25 C -0.121 4.121 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.342 0.658 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.285 0.715 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 6.623 16.712 18.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.001 3.999 3 H 0.095 0.905 4 N -0.308 5.308 5 C -0.004 4.004 6 C -0.218 4.218 7 C -0.087 4.087 8 C -0.262 4.262 9 C 0.092 3.908 10 C -0.473 4.473 11 H 0.108 0.892 12 C -0.137 4.137 13 N -0.433 5.433 14 Si 0.744 3.256 15 H -0.199 1.199 16 H -0.166 1.166 17 H -0.222 1.222 18 C -0.233 4.233 19 C -0.076 4.076 20 C -0.147 4.147 21 H 0.129 0.871 22 C -0.221 4.221 23 C -0.177 4.177 24 H 0.117 0.883 25 C -0.178 4.178 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.160 0.840 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.126 6.553 16.614 18.581 hybrid contribution -1.688 0.311 -0.504 1.789 sum -6.814 6.863 16.111 18.791 Atomic orbital electron populations 1.22629 0.97894 1.02089 1.01718 1.21027 0.91743 0.97333 0.89823 0.90544 1.60650 1.57031 1.09793 1.03315 1.20578 0.97711 0.93789 0.88277 1.18917 0.93617 1.10275 0.98996 1.20418 0.96735 0.96695 0.94854 1.20929 0.95841 1.08916 1.00487 1.17742 0.91192 0.89098 0.92785 1.19552 1.02366 1.28418 0.96967 0.89219 1.26198 0.98373 0.93889 0.95211 1.69692 1.37414 1.26648 1.09592 0.86255 0.80363 0.82764 0.76183 1.19905 1.16645 1.22179 1.20979 0.98209 1.04988 0.99108 1.20454 0.93962 0.97549 0.95679 1.22474 0.99812 1.02511 0.89942 0.87109 1.23293 0.98999 0.95447 1.04369 1.22363 1.02058 0.97624 0.95630 0.88296 1.21343 0.98040 1.01746 0.96690 0.92721 0.92059 0.92444 0.83989 0.91863 0.96206 0.89434 0.88500 0.90465 0.88313 0.88831 0.88572 0.89240 0.92244 0.92535 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 7.76 37.16 0.29 -1.66 16 2 C 0.11 1.33 2.98 -67.71 -0.20 1.13 16 3 H 0.08 0.93 7.80 -51.93 -0.40 0.53 16 4 N -0.68 -10.02 6.24 -107.99 -0.67 -10.69 16 5 C 0.12 2.02 5.60 -4.98 -0.03 1.99 16 6 C -0.22 -4.37 5.42 -104.33 -0.56 -4.93 16 7 C -0.07 -1.47 9.67 -39.66 -0.38 -1.85 16 8 C -0.24 -5.90 7.08 -38.87 -0.28 -6.17 16 9 C 0.09 2.44 5.19 -106.82 -0.55 1.88 16 10 C -0.44 -12.18 9.60 -37.74 -0.36 -12.55 16 11 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 12 C 0.08 2.18 5.43 -17.34 -0.09 2.08 16 13 N -0.81 -21.79 13.93 55.55 0.77 -21.02 16 14 Si 0.92 21.14 24.41 -169.99 -4.15 16.99 16 15 H -0.27 -6.11 6.69 56.52 0.38 -5.73 16 16 H -0.24 -5.74 6.70 56.52 0.38 -5.36 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 C -0.21 -5.04 9.80 -38.87 -0.38 -5.42 16 19 C -0.06 -1.22 9.67 -39.66 -0.38 -1.61 16 20 C -0.13 -1.44 5.73 -90.62 -0.52 -1.96 16 21 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 22 C -0.18 -1.81 9.21 -26.73 -0.25 -2.05 16 23 C -0.16 -1.49 5.77 -90.62 -0.52 -2.01 16 24 H 0.10 0.89 7.61 -51.93 -0.40 0.49 16 25 C -0.12 -1.00 10.19 37.16 0.38 -0.63 16 26 H 0.05 0.61 7.45 -51.93 -0.39 0.22 16 27 H 0.06 0.64 6.96 -51.93 -0.36 0.28 16 28 H 0.06 0.53 7.07 -51.92 -0.37 0.16 16 29 H 0.34 5.17 8.46 -39.29 -0.33 4.84 16 30 H 0.06 1.00 7.99 -51.93 -0.42 0.58 16 31 H 0.02 0.31 7.38 -51.93 -0.38 -0.07 16 32 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.10 2.36 4.27 -52.49 -0.22 2.14 16 34 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 35 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 36 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 37 H 0.10 0.90 5.85 -51.93 -0.30 0.60 16 38 H 0.09 0.85 8.05 -51.93 -0.42 0.43 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 0.45 7.90 -51.93 -0.41 0.04 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -26.84 325.91 -9.53 -36.37 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.54 Total: 7.18 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: -3.85 Total: -33.74 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.10 Total: -31.71 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.15 Total: 16.99 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.84 -9.53 -36.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576466240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.941 kcal (2) G-P(sol) polarization free energy of solvation -26.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds