Wall clock time and date at job start Mon Mar 30 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46718 * 2 1 4 4 N 1.46898 * 109.47139 * 240.00310 * 2 1 3 5 5 C 1.46897 * 111.00198 * 84.99631 * 4 2 1 6 6 C 1.50700 * 109.47186 * 179.97438 * 5 4 2 7 7 C 1.38644 * 119.74610 * 90.00161 * 6 5 4 8 8 C 1.37617 * 120.24683 * 179.97438 * 7 6 5 9 9 C 1.40722 * 119.74163 * 0.02562 * 8 7 6 10 10 C 1.41400 * 120.23930 * 180.02562 * 9 8 7 11 11 H 1.07993 * 119.99650 * 207.08963 * 10 9 8 12 12 C 1.39952 * 119.99944 * 27.09605 * 10 9 8 13 13 N 1.30821 * 119.99375 * 197.01393 * 12 10 9 14 14 Si 1.86794 * 120.00091 * 17.01160 * 12 10 9 15 15 H 1.48506 * 109.47143 * 264.88385 * 14 12 10 16 16 H 1.48498 * 109.47386 * 24.88342 * 14 12 10 17 17 H 1.48504 * 109.47024 * 144.88634 * 14 12 10 18 18 C 1.40710 * 119.51725 * 0.27255 * 9 8 7 19 19 C 1.37624 * 119.73900 * 359.40579 * 18 9 8 20 20 C 1.53004 * 109.47232 * 120.00256 * 2 1 3 21 21 H 1.08991 * 115.55189 * 154.27861 * 20 2 1 22 22 C 1.53004 * 117.49594 * 8.60648 * 20 2 1 23 23 C 1.52998 * 117.49477 * 299.98569 * 20 2 1 24 24 H 1.09005 * 117.50435 * 359.97438 * 23 20 2 25 25 C 1.53000 * 117.49636 * 214.97773 * 23 20 2 26 26 H 1.08994 * 109.47387 * 59.99839 * 1 2 3 27 27 H 1.09005 * 109.47210 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47019 * 299.99628 * 1 2 3 29 29 H 1.00904 * 110.99617 * 321.04171 * 4 2 1 30 30 H 1.09003 * 109.46824 * 59.99966 * 5 4 2 31 31 H 1.08995 * 109.47319 * 300.00526 * 5 4 2 32 32 H 1.08000 * 119.87590 * 0.02562 * 7 6 5 33 33 H 1.07996 * 120.12869 * 180.02562 * 8 7 6 34 34 H 0.97007 * 119.99784 * 179.97438 * 13 12 10 35 35 H 1.07993 * 120.13288 * 179.72219 * 18 9 8 36 36 H 1.08006 * 119.87149 * 180.31775 * 19 18 9 37 37 H 1.08998 * 117.49829 * 359.97438 * 22 20 2 38 38 H 1.08998 * 117.49229 * 145.00129 * 22 20 2 39 39 H 1.08998 * 109.47071 * 60.00430 * 25 23 20 40 40 H 1.09001 * 109.47384 * 180.02562 * 25 23 20 41 41 H 1.09003 * 109.47409 * 300.00180 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5885 -0.5214 -3.5557 7 6 1.6891 -1.1522 -4.4015 8 6 2.1399 -1.8341 -5.5086 9 6 3.5195 -1.8900 -5.7802 10 6 3.9942 -2.5873 -6.9151 11 1 4.9886 -3.0084 -6.9131 12 6 3.1753 -2.7315 -8.0409 13 7 3.4585 -3.6344 -8.9441 14 14 1.6783 -1.6347 -8.2536 15 1 0.4756 -2.3321 -7.7316 16 1 1.8812 -0.3692 -7.5036 17 1 1.4879 -1.3310 -9.6947 18 6 4.4235 -1.2514 -4.9114 19 6 3.9497 -0.5697 -3.8138 20 6 2.0401 -0.7213 1.2492 21 1 3.0320 -1.1649 1.1639 22 6 1.0104 -1.4539 2.1118 23 6 1.6360 -0.1494 2.6096 24 1 1.0072 0.7410 2.6146 25 6 2.6556 -0.2436 3.7465 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.4496 -1.4979 -1.4100 30 1 2.7588 1.0463 -2.1182 31 1 1.0871 0.6164 -2.5525 32 1 0.6307 -1.1075 -4.1912 33 1 1.4376 -2.3244 -6.1664 34 1 2.8907 -3.7347 -9.7243 35 1 5.4847 -1.2918 -5.1079 36 1 4.6413 -0.0744 -3.1484 37 1 -0.0304 -1.4216 1.7896 38 1 1.3251 -2.3794 2.5940 39 1 3.5625 0.2924 3.4666 40 1 2.2352 0.1996 4.6492 41 1 2.8953 -1.2903 3.9338 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576466240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:54 Heat of formation + Delta-G solvation = 14.251590 kcal Electronic energy + Delta-G solvation = -18560.565566 eV Core-core repulsion = 15825.391985 eV Total energy + Delta-G solvation = -2735.173581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.06881 -39.45317 -36.71609 -35.38510 -32.97377 -31.49158 -30.68042 -28.66824 -27.72615 -25.41315 -24.09975 -23.34245 -21.79083 -21.44660 -20.32182 -19.33824 -17.72485 -17.03078 -16.20215 -15.98089 -15.91970 -15.59873 -15.36951 -14.76275 -14.61392 -14.10512 -14.01058 -13.87876 -13.73712 -13.54592 -13.15576 -13.05763 -12.71425 -12.55358 -12.44630 -12.25582 -12.11379 -11.97462 -11.88358 -11.55101 -11.41462 -10.96706 -10.75763 -10.53683 -9.51071 -9.39808 -9.14693 -8.90990 -6.49181 0.77059 0.90995 1.24523 1.40051 1.48393 2.11292 2.55465 2.89299 3.33952 3.61918 3.90331 4.01019 4.16762 4.22916 4.23679 4.30586 4.38765 4.41775 4.47313 4.59282 4.60038 4.74414 4.84895 4.93993 4.95094 4.97941 5.00294 5.05252 5.09328 5.13243 5.21600 5.31386 5.34111 5.39856 5.52083 5.63867 5.76885 5.91406 6.08689 6.25941 6.28869 6.43288 6.57564 6.75817 6.84637 8.17831 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.040118 B = 0.003734 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.773776 B = 7496.716747 C = 7774.144881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.115 3.885 3 H 0.077 0.923 4 N -0.687 5.687 5 C 0.129 3.871 6 C -0.192 4.192 7 C -0.073 4.073 8 C -0.254 4.254 9 C 0.072 3.928 10 C -0.485 4.485 11 H 0.053 0.947 12 C 0.044 3.956 13 N -0.852 5.852 14 Si 0.973 3.027 15 H -0.259 1.259 16 H -0.251 1.251 17 H -0.280 1.280 18 C -0.227 4.227 19 C -0.060 4.060 20 C -0.144 4.144 21 H 0.093 0.907 22 C -0.181 4.181 23 C -0.147 4.147 24 H 0.108 0.892 25 C -0.123 4.123 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.340 0.660 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.293 0.707 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.062 8.633 19.400 22.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.005 3.995 3 H 0.095 0.905 4 N -0.318 5.318 5 C 0.001 3.999 6 C -0.193 4.193 7 C -0.092 4.092 8 C -0.273 4.273 9 C 0.070 3.930 10 C -0.515 4.515 11 H 0.071 0.929 12 C -0.170 4.170 13 N -0.479 5.479 14 Si 0.797 3.203 15 H -0.185 1.185 16 H -0.175 1.175 17 H -0.207 1.207 18 C -0.246 4.246 19 C -0.079 4.079 20 C -0.163 4.163 21 H 0.111 0.889 22 C -0.218 4.218 23 C -0.165 4.165 24 H 0.127 0.873 25 C -0.180 4.180 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.158 0.842 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.138 0.862 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.138 0.862 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.380 8.561 19.319 22.383 hybrid contribution -0.940 -0.230 -1.047 1.426 sum -8.320 8.331 18.272 21.737 Atomic orbital electron populations 1.22556 0.96494 1.02324 1.02347 1.21030 0.92787 0.97009 0.88660 0.90494 1.60564 1.57868 1.09763 1.03567 1.20524 0.98639 0.93619 0.87083 1.19459 0.93012 1.07523 0.99340 1.20778 0.98754 0.95843 0.93790 1.21058 0.95065 1.09556 1.01628 1.17885 0.92522 0.89835 0.92800 1.19527 1.01585 1.31283 0.99126 0.92866 1.26879 1.00812 0.94777 0.94541 1.69721 1.39228 1.28291 1.10655 0.85399 0.77647 0.80568 0.76696 1.18519 1.17508 1.20720 1.21170 0.98215 1.05393 0.99837 1.20784 0.95227 0.96794 0.95054 1.22349 0.99417 1.03877 0.90643 0.88909 1.23344 0.98948 0.95793 1.03708 1.22452 1.01818 0.97718 0.94539 0.87348 1.21374 0.97848 1.01837 0.96916 0.92995 0.92015 0.90910 0.84205 0.90798 0.94623 0.86244 0.88801 0.89613 0.88451 0.86150 0.87874 0.89164 0.92373 0.91162 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 7.76 71.98 0.56 -2.54 16 2 C 0.11 2.37 2.98 44.92 0.13 2.51 16 3 H 0.08 1.60 7.80 -2.39 -0.02 1.58 16 4 N -0.69 -18.08 6.24 -495.58 -3.09 -21.17 16 5 C 0.13 3.69 5.60 85.56 0.48 4.17 16 6 C -0.19 -7.14 5.42 -19.67 -0.11 -7.25 16 7 C -0.07 -2.94 9.67 22.22 0.21 -2.73 16 8 C -0.25 -12.14 7.08 22.73 0.16 -11.98 16 9 C 0.07 3.78 5.19 -21.29 -0.11 3.67 16 10 C -0.49 -28.12 9.60 23.46 0.23 -27.90 16 11 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 12 C 0.04 2.42 5.43 85.26 0.46 2.88 16 13 N -0.85 -47.93 13.93 21.83 0.30 -47.62 16 14 Si 0.97 43.88 24.41 68.60 1.67 45.55 16 15 H -0.26 -11.03 6.69 99.48 0.67 -10.37 16 16 H -0.25 -11.51 6.70 99.48 0.67 -10.85 16 17 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 18 C -0.23 -10.77 9.80 22.73 0.22 -10.54 16 19 C -0.06 -2.42 9.67 22.22 0.21 -2.21 16 20 C -0.14 -2.86 5.73 -10.79 -0.06 -2.92 16 21 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 22 C -0.18 -3.05 9.21 30.60 0.28 -2.77 16 23 C -0.15 -2.32 5.77 -10.79 -0.06 -2.38 16 24 H 0.11 1.53 7.61 -2.38 -0.02 1.51 16 25 C -0.12 -1.73 10.19 71.98 0.73 -0.99 16 26 H 0.05 0.94 7.45 -2.39 -0.02 0.92 16 27 H 0.06 1.08 6.96 -2.38 -0.02 1.06 16 28 H 0.07 1.05 7.07 -2.38 -0.02 1.03 16 29 H 0.34 9.21 8.46 -89.69 -0.76 8.45 16 30 H 0.07 2.00 7.99 -2.39 -0.02 1.98 16 31 H 0.04 0.93 7.38 -2.39 -0.02 0.92 16 32 H 0.12 4.05 8.06 -2.91 -0.02 4.02 16 33 H 0.09 4.50 4.27 -2.91 -0.01 4.48 16 34 H 0.29 14.78 8.30 -92.70 -0.77 14.01 16 35 H 0.10 4.52 8.06 -2.91 -0.02 4.49 16 36 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 37 H 0.10 1.60 5.85 -2.39 -0.01 1.59 16 38 H 0.09 1.50 8.05 -2.39 -0.02 1.49 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.05 0.77 7.90 -2.39 -0.02 0.75 16 Total: -1.00 -59.45 325.91 2.40 -57.04 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.17 Total: 27.18 kcal Atomic # 6 Polarization: -64.33 SS G_CDS: 3.35 Total: -60.98 kcal Atomic # 7 Polarization: -66.00 SS G_CDS: -2.79 Total: -68.79 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.67 Total: 45.55 kcal Total: -59.45 2.40 -57.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576466240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.294 kcal (2) G-P(sol) polarization free energy of solvation -59.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds