Wall clock time and date at job start Mon Mar 30 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47345 * 2 1 4 4 N 1.46899 * 109.46949 * 239.99688 * 2 1 3 5 5 C 1.46900 * 111.00118 * 85.00010 * 4 2 1 6 6 C 1.50699 * 109.47174 * 179.97438 * 5 4 2 7 7 C 1.38636 * 119.75000 * 269.72361 * 6 5 4 8 8 C 1.37625 * 120.24643 * 179.76320 * 7 6 5 9 9 C 1.40710 * 119.74445 * 0.49260 * 8 7 6 10 10 C 1.41398 * 120.24562 * 179.78938 * 9 8 7 11 11 H 1.07997 * 120.00129 * 203.90370 * 10 9 8 12 12 C 1.39950 * 119.99459 * 23.90123 * 10 9 8 13 13 N 1.30824 * 120.00280 * 15.98180 * 12 10 9 14 14 Si 1.86803 * 119.99596 * 195.97929 * 12 10 9 15 15 H 1.48505 * 109.47123 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47234 * 119.99848 * 14 12 10 17 17 H 1.48498 * 109.47067 * 240.00184 * 14 12 10 18 18 C 1.40723 * 119.51145 * 359.76260 * 9 8 7 19 19 C 1.37614 * 119.74439 * 0.02562 * 18 9 8 20 20 C 1.52998 * 109.47220 * 119.99709 * 2 1 3 21 21 H 1.09005 * 115.55186 * 38.80351 * 20 2 1 22 22 C 1.53001 * 117.49948 * 184.47022 * 20 2 1 23 23 C 1.52996 * 60.00016 * 107.49201 * 22 20 2 24 24 H 1.08999 * 117.50268 * 107.48727 * 23 22 20 25 25 C 1.52999 * 117.49952 * 252.51280 * 23 22 20 26 26 H 1.08996 * 109.47270 * 182.72673 * 1 2 3 27 27 H 1.09002 * 109.46970 * 302.72036 * 1 2 3 28 28 H 1.08995 * 109.47254 * 62.72171 * 1 2 3 29 29 H 1.00909 * 110.99800 * 208.95599 * 4 2 1 30 30 H 1.08998 * 109.47242 * 300.00300 * 5 4 2 31 31 H 1.09004 * 109.46824 * 59.99863 * 5 4 2 32 32 H 1.08002 * 119.87622 * 0.02562 * 7 6 5 33 33 H 1.08001 * 120.12543 * 180.23728 * 8 7 6 34 34 H 0.96996 * 119.99659 * 179.97438 * 13 12 10 35 35 H 1.08001 * 120.12549 * 180.02562 * 18 9 8 36 36 H 1.08000 * 119.87381 * 180.02562 * 19 18 9 37 37 H 1.09005 * 117.49815 * 214.97643 * 22 20 2 38 38 H 1.09000 * 117.49856 * 359.97438 * 22 20 2 39 39 H 1.09004 * 109.47415 * 128.60874 * 25 23 22 40 40 H 1.08999 * 109.47145 * 248.60853 * 25 23 22 41 41 H 1.08997 * 109.46905 * 8.60576 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0824 0.2224 -2.3469 6 6 2.5884 -0.5217 -3.5557 7 6 3.9493 -0.5655 -3.8167 8 6 4.4229 -1.2463 -4.9150 9 6 3.5194 -1.8906 -5.7801 10 6 3.9941 -2.5892 -6.9141 11 1 3.3446 -2.7465 -7.7625 12 6 5.3057 -3.0770 -6.9369 13 7 5.9880 -3.1713 -5.8247 14 14 6.0821 -3.5932 -8.5556 15 1 5.1088 -3.3894 -9.6586 16 1 7.2938 -2.7726 -8.8074 17 1 6.4608 -5.0275 -8.4877 18 6 2.1398 -1.8349 -5.5082 19 6 1.6890 -1.1521 -4.4017 20 6 2.0400 -0.7212 1.2493 21 1 1.4742 -1.6042 1.5463 22 6 3.5511 -0.7371 1.4884 23 6 2.6477 0.1361 2.3613 24 1 2.4814 -0.1827 3.3903 25 6 2.6987 1.6490 2.1390 26 1 -0.3633 -1.0264 0.0489 27 1 -0.3633 0.5555 0.8646 28 1 -0.3633 0.4710 -0.9133 29 1 2.9173 -1.1206 -1.0286 30 1 1.0871 0.6162 -2.5525 31 1 2.7588 1.0461 -2.1182 32 1 4.6406 -0.0671 -3.1533 33 1 5.4838 -1.2824 -5.1144 34 1 6.8969 -3.5097 -5.8405 35 1 1.4375 -2.3262 -6.1653 36 1 0.6307 -1.1084 -4.1908 37 1 3.9794 -1.6304 1.9431 38 1 4.1820 -0.2341 0.7554 39 1 1.6869 2.0304 2.0014 40 1 3.1528 2.1285 3.0061 41 1 3.2927 1.8659 1.2513 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576466241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:58 Heat of formation + Delta-G solvation = 24.307212 kcal Electronic energy + Delta-G solvation = -18722.830772 eV Core-core repulsion = 15988.093235 eV Total energy + Delta-G solvation = -2734.737537 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.92590 -37.57231 -35.14757 -33.54835 -31.00672 -29.25458 -28.90031 -28.62821 -26.11006 -23.75008 -22.44734 -21.10400 -20.93382 -19.85970 -19.11541 -17.26303 -16.26867 -15.48488 -15.07520 -14.70252 -14.20558 -13.98184 -13.57101 -13.39691 -13.09038 -12.66009 -12.50424 -12.31811 -12.03218 -11.89963 -11.80275 -11.61640 -11.54766 -11.35310 -11.02755 -10.90447 -10.69479 -10.36534 -10.27865 -9.99845 -9.89980 -9.50414 -9.34893 -9.11650 -7.94060 -7.40807 -7.24630 -6.71817 -4.32313 2.75859 3.08214 3.12746 3.13849 3.19583 3.67211 3.94928 4.46619 4.59482 4.70942 4.83072 5.01816 5.16819 5.32360 5.41977 5.60396 5.67188 5.73911 5.75712 5.80462 5.86332 5.87927 5.95415 6.02911 6.13292 6.17929 6.18201 6.35575 6.38364 6.47119 6.50619 6.98424 7.10522 7.32843 7.43164 7.53711 7.65710 7.86486 7.94822 8.09651 8.19716 8.34475 8.68325 8.93488 9.01955 10.21446 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.033840 B = 0.003899 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.220684 B = 7179.776916 C = 7667.113468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.107 3.893 3 H 0.043 0.957 4 N -0.679 5.679 5 C 0.125 3.875 6 C -0.212 4.212 7 C -0.096 4.096 8 C -0.166 4.166 9 C 0.110 3.890 10 C -0.461 4.461 11 H 0.077 0.923 12 C 0.074 3.926 13 N -0.795 5.795 14 Si 0.908 3.092 15 H -0.261 1.261 16 H -0.273 1.273 17 H -0.275 1.275 18 C -0.228 4.228 19 C -0.069 4.069 20 C -0.145 4.145 21 H 0.106 0.894 22 C -0.177 4.177 23 C -0.154 4.154 24 H 0.101 0.899 25 C -0.123 4.123 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.342 0.658 30 H 0.060 0.940 31 H 0.016 0.984 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.279 0.721 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.838 5.824 11.791 13.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.002 4.002 3 H 0.061 0.939 4 N -0.311 5.311 5 C -0.002 4.002 6 C -0.213 4.213 7 C -0.115 4.115 8 C -0.185 4.185 9 C 0.108 3.892 10 C -0.491 4.491 11 H 0.095 0.905 12 C -0.143 4.143 13 N -0.421 5.421 14 Si 0.732 3.268 15 H -0.184 1.184 16 H -0.198 1.198 17 H -0.200 1.200 18 C -0.248 4.248 19 C -0.088 4.088 20 C -0.163 4.163 21 H 0.124 0.876 22 C -0.214 4.214 23 C -0.173 4.173 24 H 0.119 0.881 25 C -0.180 4.180 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.161 0.839 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.100 0.900 33 H 0.138 0.862 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.235 5.502 11.706 13.610 hybrid contribution 1.261 0.067 -0.387 1.321 sum -2.974 5.569 11.318 12.960 Atomic orbital electron populations 1.21731 0.94753 1.02035 1.00690 1.21113 0.95654 0.95258 0.88217 0.93935 1.60673 1.33983 1.33275 1.03200 1.20594 0.98652 0.92007 0.88994 1.18916 0.93350 1.10136 0.98921 1.20529 0.93630 0.99738 0.97650 1.21346 1.00131 1.00266 0.96784 1.17634 0.90822 0.88906 0.91862 1.19644 0.96689 1.30922 1.01870 0.90511 1.25911 0.97105 0.93728 0.97515 1.69831 1.10866 1.33973 1.27397 0.86276 0.79491 0.78594 0.82433 1.18435 1.19770 1.20014 1.20980 0.95687 1.07929 1.00160 1.20324 0.96668 0.97120 0.94717 1.22577 0.95634 1.01289 0.96849 0.87575 1.23088 0.93273 1.02106 1.02935 1.22357 1.05144 0.93733 0.96025 0.88052 1.21359 1.01779 0.93307 1.01512 0.92183 0.93224 0.92736 0.83852 0.92158 0.96635 0.90040 0.86236 0.91043 0.89155 0.89516 0.88739 0.88883 0.92145 0.92386 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.43 37.16 0.35 -1.32 16 2 C 0.11 1.43 2.61 -67.71 -0.18 1.25 16 3 H 0.04 0.57 5.71 -51.93 -0.30 0.27 16 4 N -0.68 -11.23 6.30 -107.99 -0.68 -11.91 16 5 C 0.13 2.25 5.60 -4.98 -0.03 2.23 16 6 C -0.21 -4.64 5.41 -104.33 -0.56 -5.21 16 7 C -0.10 -2.26 9.67 -39.66 -0.38 -2.64 16 8 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 9 C 0.11 2.98 5.59 -106.82 -0.60 2.39 16 10 C -0.46 -12.42 9.07 -37.74 -0.34 -12.77 16 11 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 12 C 0.07 1.89 5.19 -17.34 -0.09 1.80 16 13 N -0.79 -20.73 10.81 55.55 0.60 -20.13 16 14 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 15 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 16 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 18 C -0.23 -5.72 9.80 -38.87 -0.38 -6.10 16 19 C -0.07 -1.60 9.67 -39.66 -0.38 -1.98 16 20 C -0.14 -1.72 5.19 -90.62 -0.47 -2.19 16 21 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 22 C -0.18 -2.02 9.18 -26.73 -0.25 -2.26 16 23 C -0.15 -1.57 6.41 -90.62 -0.58 -2.15 16 24 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 25 C -0.12 -1.17 8.71 37.16 0.32 -0.85 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.71 7.40 -51.93 -0.38 0.32 16 29 H 0.34 5.89 7.71 -39.29 -0.30 5.58 16 30 H 0.06 1.05 7.33 -51.93 -0.38 0.66 16 31 H 0.02 0.27 7.99 -51.93 -0.42 -0.14 16 32 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.12 3.24 6.05 -52.49 -0.32 2.93 16 34 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 35 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.14 8.01 -51.93 -0.42 0.72 16 39 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.58 7.34 -51.93 -0.38 0.20 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -27.01 333.04 -10.66 -37.67 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.67 Total: 10.06 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: -3.91 Total: -34.50 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: -0.08 Total: -32.04 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.01 -10.66 -37.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576466241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.981 kcal (2) G-P(sol) polarization free energy of solvation -27.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds