Wall clock time and date at job start Mon Mar 30 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47345 * 2 1 4 4 N 1.46899 * 109.46949 * 239.99688 * 2 1 3 5 5 C 1.46900 * 111.00118 * 85.00010 * 4 2 1 6 6 C 1.50699 * 109.47174 * 179.97438 * 5 4 2 7 7 C 1.38636 * 119.75000 * 269.72361 * 6 5 4 8 8 C 1.37625 * 120.24643 * 179.76320 * 7 6 5 9 9 C 1.40710 * 119.74445 * 0.49260 * 8 7 6 10 10 C 1.41398 * 120.24562 * 179.78938 * 9 8 7 11 11 H 1.07997 * 120.00129 * 203.90370 * 10 9 8 12 12 C 1.39950 * 119.99459 * 23.90123 * 10 9 8 13 13 N 1.30824 * 120.00280 * 15.98180 * 12 10 9 14 14 Si 1.86803 * 119.99596 * 195.97929 * 12 10 9 15 15 H 1.48505 * 109.47123 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47234 * 119.99848 * 14 12 10 17 17 H 1.48498 * 109.47067 * 240.00184 * 14 12 10 18 18 C 1.40723 * 119.51145 * 359.76260 * 9 8 7 19 19 C 1.37614 * 119.74439 * 0.02562 * 18 9 8 20 20 C 1.52998 * 109.47220 * 119.99709 * 2 1 3 21 21 H 1.09005 * 115.55186 * 38.80351 * 20 2 1 22 22 C 1.53001 * 117.49948 * 184.47022 * 20 2 1 23 23 C 1.52996 * 60.00016 * 107.49201 * 22 20 2 24 24 H 1.08999 * 117.50268 * 107.48727 * 23 22 20 25 25 C 1.52999 * 117.49952 * 252.51280 * 23 22 20 26 26 H 1.08996 * 109.47270 * 182.72673 * 1 2 3 27 27 H 1.09002 * 109.46970 * 302.72036 * 1 2 3 28 28 H 1.08995 * 109.47254 * 62.72171 * 1 2 3 29 29 H 1.00909 * 110.99800 * 208.95599 * 4 2 1 30 30 H 1.08998 * 109.47242 * 300.00300 * 5 4 2 31 31 H 1.09004 * 109.46824 * 59.99863 * 5 4 2 32 32 H 1.08002 * 119.87622 * 0.02562 * 7 6 5 33 33 H 1.08001 * 120.12543 * 180.23728 * 8 7 6 34 34 H 0.96996 * 119.99659 * 179.97438 * 13 12 10 35 35 H 1.08001 * 120.12549 * 180.02562 * 18 9 8 36 36 H 1.08000 * 119.87381 * 180.02562 * 19 18 9 37 37 H 1.09005 * 117.49815 * 214.97643 * 22 20 2 38 38 H 1.09000 * 117.49856 * 359.97438 * 22 20 2 39 39 H 1.09004 * 109.47415 * 128.60874 * 25 23 22 40 40 H 1.08999 * 109.47145 * 248.60853 * 25 23 22 41 41 H 1.08997 * 109.46905 * 8.60576 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0824 0.2224 -2.3469 6 6 2.5884 -0.5217 -3.5557 7 6 3.9493 -0.5655 -3.8167 8 6 4.4229 -1.2463 -4.9150 9 6 3.5194 -1.8906 -5.7801 10 6 3.9941 -2.5892 -6.9141 11 1 3.3446 -2.7465 -7.7625 12 6 5.3057 -3.0770 -6.9369 13 7 5.9880 -3.1713 -5.8247 14 14 6.0821 -3.5932 -8.5556 15 1 5.1088 -3.3894 -9.6586 16 1 7.2938 -2.7726 -8.8074 17 1 6.4608 -5.0275 -8.4877 18 6 2.1398 -1.8349 -5.5082 19 6 1.6890 -1.1521 -4.4017 20 6 2.0400 -0.7212 1.2493 21 1 1.4742 -1.6042 1.5463 22 6 3.5511 -0.7371 1.4884 23 6 2.6477 0.1361 2.3613 24 1 2.4814 -0.1827 3.3903 25 6 2.6987 1.6490 2.1390 26 1 -0.3633 -1.0264 0.0489 27 1 -0.3633 0.5555 0.8646 28 1 -0.3633 0.4710 -0.9133 29 1 2.9173 -1.1206 -1.0286 30 1 1.0871 0.6162 -2.5525 31 1 2.7588 1.0461 -2.1182 32 1 4.6406 -0.0671 -3.1533 33 1 5.4838 -1.2824 -5.1144 34 1 6.8969 -3.5097 -5.8405 35 1 1.4375 -2.3262 -6.1653 36 1 0.6307 -1.1084 -4.1908 37 1 3.9794 -1.6304 1.9431 38 1 4.1820 -0.2341 0.7554 39 1 1.6869 2.0304 2.0014 40 1 3.1528 2.1285 3.0061 41 1 3.2927 1.8659 1.2513 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576466241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:57 Heat of formation + Delta-G solvation = 11.459322 kcal Electronic energy + Delta-G solvation = -18723.387898 eV Core-core repulsion = 15988.093235 eV Total energy + Delta-G solvation = -2735.294663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.02561 -39.28639 -36.54204 -35.27629 -32.55046 -31.14345 -30.42281 -29.42179 -27.77590 -25.21644 -23.68578 -22.85917 -22.03303 -21.58694 -20.13710 -19.21204 -17.41069 -17.08385 -16.46777 -15.90873 -15.70316 -15.63238 -15.17656 -14.82134 -14.29168 -13.94434 -13.79789 -13.52468 -13.49469 -13.32998 -13.17905 -12.96679 -12.77880 -12.63004 -12.49853 -12.39544 -12.30415 -11.98662 -11.52860 -11.38185 -11.22824 -11.03426 -10.86358 -10.73011 -9.38570 -9.24355 -9.11571 -8.61081 -6.32756 0.95002 1.17526 1.38023 1.50069 1.53501 2.21367 2.66420 2.81746 3.45568 3.69044 3.81134 3.92998 4.03959 4.24104 4.32625 4.38657 4.43674 4.48443 4.59904 4.67266 4.73018 4.78439 4.87333 4.93150 4.93788 5.01284 5.05646 5.13104 5.17229 5.17832 5.25374 5.38963 5.40638 5.48522 5.50869 5.72700 5.98095 6.12386 6.24504 6.31610 6.41438 6.56510 6.72546 6.96105 7.06074 8.34784 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.033840 B = 0.003899 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.220684 B = 7179.776916 C = 7667.113468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.109 3.891 3 H 0.047 0.953 4 N -0.688 5.688 5 C 0.133 3.867 6 C -0.199 4.199 7 C -0.099 4.099 8 C -0.190 4.190 9 C 0.078 3.922 10 C -0.501 4.501 11 H 0.073 0.927 12 C 0.033 3.967 13 N -0.827 5.827 14 Si 0.983 3.017 15 H -0.259 1.259 16 H -0.263 1.263 17 H -0.265 1.265 18 C -0.245 4.245 19 C -0.073 4.073 20 C -0.155 4.155 21 H 0.106 0.894 22 C -0.186 4.186 23 C -0.136 4.136 24 H 0.118 0.882 25 C -0.124 4.124 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.337 0.663 30 H 0.072 0.928 31 H 0.025 0.975 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.287 0.713 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.311 6.551 13.116 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.000 4.000 3 H 0.065 0.935 4 N -0.320 5.320 5 C 0.005 3.995 6 C -0.201 4.201 7 C -0.118 4.118 8 C -0.209 4.209 9 C 0.075 3.925 10 C -0.531 4.531 11 H 0.091 0.909 12 C -0.181 4.181 13 N -0.453 5.453 14 Si 0.804 3.196 15 H -0.183 1.183 16 H -0.188 1.188 17 H -0.190 1.190 18 C -0.264 4.264 19 C -0.092 4.092 20 C -0.173 4.173 21 H 0.124 0.876 22 C -0.223 4.223 23 C -0.155 4.155 24 H 0.136 0.864 25 C -0.181 4.181 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.155 0.845 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.726 6.239 13.050 15.217 hybrid contribution 1.330 -0.096 -0.652 1.484 sum -3.397 6.143 12.398 14.247 Atomic orbital electron populations 1.21717 0.93897 1.01923 1.01396 1.21166 0.96197 0.95236 0.87420 0.93550 1.60630 1.33688 1.33478 1.04189 1.20492 0.99248 0.91822 0.87946 1.19346 0.92598 1.08430 0.99681 1.20771 0.94914 0.99142 0.96979 1.21320 0.99386 1.01926 0.98291 1.17975 0.91926 0.89867 0.92694 1.19878 0.98184 1.32809 1.02235 0.90903 1.26763 0.96951 0.93193 1.01163 1.69882 1.11485 1.34543 1.29435 0.85145 0.78441 0.78526 0.77486 1.18266 1.18808 1.19022 1.21180 0.95234 1.08758 1.01244 1.20629 0.98186 0.96420 0.93967 1.22522 0.95800 1.01917 0.97094 0.87595 1.23104 0.92943 1.02855 1.03428 1.22465 1.02896 0.93895 0.96208 0.86398 1.21395 1.02109 0.92861 1.01741 0.92856 0.91062 0.93338 0.84493 0.90992 0.95684 0.88062 0.87932 0.90248 0.88804 0.87066 0.88203 0.90017 0.91543 0.90856 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.43 71.98 0.68 -2.27 16 2 C 0.11 2.67 2.61 44.91 0.12 2.78 16 3 H 0.05 1.13 5.71 -2.39 -0.01 1.11 16 4 N -0.69 -21.61 6.30 -495.58 -3.12 -24.73 16 5 C 0.13 4.52 5.60 85.56 0.48 5.00 16 6 C -0.20 -8.55 5.41 -19.68 -0.11 -8.66 16 7 C -0.10 -4.66 9.67 22.22 0.21 -4.44 16 8 C -0.19 -10.26 8.70 22.73 0.20 -10.06 16 9 C 0.08 4.35 5.59 -21.29 -0.12 4.23 16 10 C -0.50 -27.98 9.07 23.46 0.21 -27.77 16 11 H 0.07 3.94 7.90 -2.91 -0.02 3.92 16 12 C 0.03 1.73 5.19 85.26 0.44 2.17 16 13 N -0.83 -44.28 10.81 21.83 0.24 -44.04 16 14 Si 0.98 39.09 29.59 68.60 2.03 41.12 16 15 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 16 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 17 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 18 C -0.24 -12.51 9.80 22.73 0.22 -12.29 16 19 C -0.07 -3.33 9.67 22.22 0.21 -3.11 16 20 C -0.15 -3.36 5.19 -10.79 -0.06 -3.41 16 21 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 22 C -0.19 -3.96 9.18 30.59 0.28 -3.68 16 23 C -0.14 -2.42 6.41 -10.80 -0.07 -2.49 16 24 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 25 C -0.12 -2.03 8.71 71.98 0.63 -1.40 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 1.14 7.40 -2.39 -0.02 1.12 16 29 H 0.34 11.21 7.71 -89.69 -0.69 10.52 16 30 H 0.07 2.30 7.33 -2.39 -0.02 2.28 16 31 H 0.03 0.81 7.99 -2.39 -0.02 0.79 16 32 H 0.10 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.10 5.81 6.05 -2.91 -0.02 5.79 16 34 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 35 H 0.09 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.11 4.44 8.06 -2.91 -0.02 4.41 16 37 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.08 1.92 8.01 -2.39 -0.02 1.91 16 39 H 0.07 1.02 8.07 -2.39 -0.02 1.00 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.04 0.84 7.34 -2.39 -0.02 0.83 16 Total: -1.00 -58.95 333.04 2.79 -56.16 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: 0.31 Total: 36.89 kcal Atomic # 6 Polarization: -68.74 SS G_CDS: 3.34 Total: -65.40 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: -2.89 Total: -68.77 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -58.95 2.79 -56.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576466241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.617 kcal (2) G-P(sol) polarization free energy of solvation -58.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds