Wall clock time and date at job start Mon Mar 30 2020 06:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 120.00397 * 2 1 4 4 C 1.53003 * 109.47234 * 124.99642 * 3 2 1 5 5 C 1.52996 * 109.47107 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47646 * 55.00305 * 5 4 3 7 7 C 1.53002 * 109.46986 * 175.00342 * 5 4 3 8 8 N 1.46900 * 109.47065 * 295.00179 * 5 4 3 9 9 C 1.46906 * 110.99938 * 155.00386 * 8 5 4 10 10 C 1.50704 * 109.46999 * 179.97438 * 9 8 5 11 11 C 1.38639 * 119.74939 * 89.99824 * 10 9 8 12 12 C 1.37620 * 120.24897 * 180.27710 * 11 10 9 13 13 C 1.40715 * 119.74131 * 359.51904 * 12 11 10 14 14 C 1.41399 * 120.24183 * 180.22985 * 13 12 11 15 15 H 1.07996 * 120.00044 * 204.52621 * 14 13 12 16 16 C 1.39950 * 119.99773 * 24.53568 * 14 13 12 17 17 N 1.30821 * 119.99991 * 17.71280 * 16 14 13 18 18 Si 1.86800 * 119.99756 * 197.70913 * 16 14 13 19 19 H 1.48506 * 109.46742 * 59.99979 * 18 16 14 20 20 H 1.48505 * 109.46999 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47336 * 300.00007 * 18 16 14 22 22 C 1.40715 * 119.51261 * 0.47567 * 13 12 11 23 23 C 1.37609 * 119.74608 * 359.75586 * 22 13 12 24 24 H 1.07997 * 119.99694 * 179.97438 * 1 2 3 25 25 H 1.07996 * 119.99786 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00191 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.46522 * 5.00520 * 3 2 1 28 28 H 1.08997 * 109.47632 * 245.00516 * 3 2 1 29 29 H 1.08997 * 109.46891 * 60.00411 * 4 3 2 30 30 H 1.09001 * 109.47082 * 300.00793 * 4 3 2 31 31 H 1.08996 * 109.47258 * 299.99844 * 7 5 4 32 32 H 1.08998 * 109.47303 * 60.00236 * 7 5 4 33 33 H 1.09001 * 109.47206 * 179.97438 * 7 5 4 34 34 H 1.00900 * 111.00517 * 31.04958 * 8 5 4 35 35 H 1.08993 * 109.47537 * 59.99882 * 9 8 5 36 36 H 1.09002 * 109.46673 * 299.99281 * 9 8 5 37 37 H 1.08000 * 119.87572 * 359.97438 * 11 10 9 38 38 H 1.07993 * 120.12561 * 179.72165 * 12 11 10 39 39 H 0.97005 * 119.99803 * 180.02562 * 17 16 14 40 40 H 1.08000 * 120.12510 * 179.73128 * 22 13 12 41 41 H 1.08002 * 119.87647 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7997 2.6582 1.1820 6 1 3.0912 3.4865 1.1823 7 6 4.6793 2.7391 2.4313 8 7 4.6442 2.7366 -0.0174 9 6 4.9184 4.1341 -0.3778 10 6 5.7858 4.1743 -1.6095 11 6 5.1975 4.2070 -2.8645 12 6 5.9799 4.2381 -3.9963 13 6 7.3818 4.2468 -3.8758 14 6 8.1957 4.2836 -5.0315 15 1 9.2056 3.9027 -4.9931 16 6 7.6926 4.8137 -6.2250 17 7 6.6306 5.5774 -6.2051 18 14 8.5377 4.4309 -7.8463 19 1 8.5299 2.9634 -8.0741 20 1 7.8144 5.1070 -8.9532 21 1 9.9399 4.9173 -7.8007 22 6 7.9679 4.2134 -2.5969 23 6 7.1660 4.1777 -1.4791 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6213 1.4026 -0.9314 29 1 3.7400 0.5065 1.0921 30 1 2.4772 1.2354 2.1131 31 1 4.0527 2.6810 3.3213 32 1 5.3879 1.9109 2.4311 33 1 5.2244 3.6831 2.4314 34 1 4.2240 2.2400 -0.7887 35 1 5.4345 4.6272 0.4458 36 1 3.9786 4.6487 -0.5779 37 1 4.1213 4.2032 -2.9544 38 1 5.5195 4.2590 -4.9729 39 1 6.2818 5.9445 -7.0325 40 1 9.0429 4.2154 -2.4931 41 1 7.6136 4.1516 -0.4966 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583263170.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:28 Heat of formation + Delta-G solvation = 14.180754 kcal Electronic energy + Delta-G solvation = -18452.467386 eV Core-core repulsion = 15717.290733 eV Total energy + Delta-G solvation = -2735.176653 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.17901 -37.18384 -34.91740 -33.72114 -31.72729 -29.49760 -29.15908 -28.79482 -26.05642 -23.91345 -22.83351 -20.95267 -20.20426 -19.87366 -19.75570 -17.26115 -15.84680 -15.72651 -15.25855 -14.98396 -14.18398 -13.90769 -13.85835 -13.45156 -13.33028 -12.73290 -12.50563 -12.29784 -11.95200 -11.92266 -11.79851 -11.59794 -11.39063 -11.21121 -11.03704 -10.93034 -10.77142 -10.54735 -10.44177 -10.29104 -9.52740 -9.41371 -9.35440 -9.09960 -7.99836 -7.41543 -7.26285 -6.74191 -4.32431 2.15693 2.77798 3.07083 3.09850 3.12190 3.21737 3.94439 4.47632 4.63166 4.77923 4.94162 5.04834 5.14156 5.29925 5.52376 5.64803 5.67667 5.75440 5.78262 5.81069 5.90719 5.98435 6.05900 6.09816 6.20348 6.35535 6.36854 6.45813 6.46975 6.51595 6.65155 6.97557 7.10051 7.31062 7.41324 7.49610 7.64808 7.81919 7.93521 8.08404 8.18263 8.33736 8.66865 8.92441 9.01136 10.20396 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023921 B = 0.003920 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.230784 B = 7140.898604 C = 7940.176775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.102 4.102 4 C -0.115 4.115 5 C 0.079 3.921 6 H 0.037 0.963 7 C -0.138 4.138 8 N -0.681 5.681 9 C 0.125 3.875 10 C -0.213 4.213 11 C -0.096 4.096 12 C -0.166 4.166 13 C 0.113 3.887 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.076 3.924 17 N -0.794 5.794 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.229 4.229 23 C -0.068 4.068 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.340 0.660 35 H 0.060 0.940 36 H 0.017 0.983 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.280 0.720 40 H 0.090 0.910 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.316 -6.125 9.739 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.163 4.163 3 C -0.139 4.139 4 C -0.153 4.153 5 C -0.031 4.031 6 H 0.055 0.945 7 C -0.196 4.196 8 N -0.314 5.314 9 C -0.003 4.003 10 C -0.214 4.214 11 C -0.115 4.115 12 C -0.185 4.185 13 C 0.110 3.890 14 C -0.494 4.494 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.420 5.420 18 Si 0.732 3.268 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.248 4.248 23 C -0.087 4.087 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.126 0.874 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.160 0.840 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.100 0.900 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.890 -6.040 9.939 14.054 hybrid contribution -0.542 0.208 -1.203 1.336 sum -8.432 -5.831 8.736 13.469 Atomic orbital electron populations 1.23817 0.96001 1.01624 1.02540 1.22987 0.95964 0.98631 0.98705 1.20868 0.98266 0.95238 0.99539 1.21714 0.97488 0.98187 0.97874 1.21542 0.93135 0.96021 0.92395 0.94512 1.21768 0.99662 1.02404 0.95740 1.60735 1.48962 1.15002 1.06748 1.20587 0.96326 0.87580 0.95827 1.18911 0.93311 1.16708 0.92517 1.20518 0.96917 1.01180 0.92862 1.21267 0.93862 1.06309 0.97090 1.17613 0.92257 0.87318 0.91803 1.19573 1.00197 1.35798 0.93818 0.90537 1.25904 0.94573 0.92570 1.01065 1.69825 1.20308 1.22178 1.29660 0.86386 0.80137 0.79872 0.80424 1.18832 1.20377 1.19029 1.20974 0.97429 1.13692 0.92737 1.20324 0.92893 0.99063 0.96445 0.88719 0.88761 0.87368 0.91750 0.90512 0.90898 0.91643 0.93253 0.92107 0.92781 0.84024 0.92116 0.96445 0.90010 0.86600 0.90895 0.89150 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.88 14.32 29.01 0.42 -1.46 16 2 C -0.14 -1.45 9.52 -36.03 -0.34 -1.79 16 3 C -0.10 -1.10 5.49 -27.88 -0.15 -1.25 16 4 C -0.11 -1.25 4.79 -26.73 -0.13 -1.37 16 5 C 0.08 1.00 2.65 -67.71 -0.18 0.83 16 6 H 0.04 0.48 7.80 -51.93 -0.40 0.07 16 7 C -0.14 -1.64 9.42 37.16 0.35 -1.29 16 8 N -0.68 -10.73 6.30 -107.99 -0.68 -11.41 16 9 C 0.12 2.22 5.60 -4.97 -0.03 2.19 16 10 C -0.21 -4.64 5.42 -104.33 -0.56 -5.20 16 11 C -0.10 -2.23 9.67 -39.66 -0.38 -2.61 16 12 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 13 C 0.11 3.04 5.57 -106.82 -0.60 2.44 16 14 C -0.46 -12.47 9.06 -37.74 -0.34 -12.81 16 15 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 16 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 17 N -0.79 -20.68 10.95 55.55 0.61 -20.07 16 18 Si 0.91 18.79 29.59 -169.99 -5.03 13.76 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 C -0.23 -5.72 9.80 -38.88 -0.38 -6.10 16 23 C -0.07 -1.56 9.67 -39.66 -0.38 -1.95 16 24 H 0.09 0.75 8.06 -52.49 -0.42 0.33 16 25 H 0.09 0.84 7.84 -52.49 -0.41 0.43 16 26 H 0.11 1.01 8.06 -52.49 -0.42 0.58 16 27 H 0.06 0.69 7.79 -51.93 -0.40 0.28 16 28 H 0.08 0.92 6.43 -51.93 -0.33 0.58 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.68 7.45 -51.93 -0.39 0.30 16 34 H 0.34 5.39 6.46 -39.29 -0.25 5.14 16 35 H 0.06 1.05 7.37 -51.93 -0.38 0.67 16 36 H 0.02 0.30 8.00 -51.93 -0.42 -0.11 16 37 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.12 3.13 6.16 -52.49 -0.32 2.80 16 39 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 40 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 41 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 337.32 15.07 5.08 5.08 Total: -1.00 -26.93 337.32 -9.83 -36.76 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.67 Total: 9.11 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: -3.14 Total: -33.23 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: -0.07 Total: -31.48 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.93 -9.83 -36.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583263170.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.943 kcal (2) G-P(sol) polarization free energy of solvation -26.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds