Wall clock time and date at job start Mon Mar 30 2020 06:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 120.00397 * 2 1 4 4 C 1.53003 * 109.47234 * 124.99642 * 3 2 1 5 5 C 1.52996 * 109.47107 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47646 * 55.00305 * 5 4 3 7 7 C 1.53002 * 109.46986 * 175.00342 * 5 4 3 8 8 N 1.46900 * 109.47065 * 295.00179 * 5 4 3 9 9 C 1.46906 * 110.99938 * 155.00386 * 8 5 4 10 10 C 1.50704 * 109.46999 * 179.97438 * 9 8 5 11 11 C 1.38639 * 119.74939 * 89.99824 * 10 9 8 12 12 C 1.37620 * 120.24897 * 180.27710 * 11 10 9 13 13 C 1.40715 * 119.74131 * 359.51904 * 12 11 10 14 14 C 1.41399 * 120.24183 * 180.22985 * 13 12 11 15 15 H 1.07996 * 120.00044 * 204.52621 * 14 13 12 16 16 C 1.39950 * 119.99773 * 24.53568 * 14 13 12 17 17 N 1.30821 * 119.99991 * 17.71280 * 16 14 13 18 18 Si 1.86800 * 119.99756 * 197.70913 * 16 14 13 19 19 H 1.48506 * 109.46742 * 59.99979 * 18 16 14 20 20 H 1.48505 * 109.46999 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47336 * 300.00007 * 18 16 14 22 22 C 1.40715 * 119.51261 * 0.47567 * 13 12 11 23 23 C 1.37609 * 119.74608 * 359.75586 * 22 13 12 24 24 H 1.07997 * 119.99694 * 179.97438 * 1 2 3 25 25 H 1.07996 * 119.99786 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00191 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.46522 * 5.00520 * 3 2 1 28 28 H 1.08997 * 109.47632 * 245.00516 * 3 2 1 29 29 H 1.08997 * 109.46891 * 60.00411 * 4 3 2 30 30 H 1.09001 * 109.47082 * 300.00793 * 4 3 2 31 31 H 1.08996 * 109.47258 * 299.99844 * 7 5 4 32 32 H 1.08998 * 109.47303 * 60.00236 * 7 5 4 33 33 H 1.09001 * 109.47206 * 179.97438 * 7 5 4 34 34 H 1.00900 * 111.00517 * 31.04958 * 8 5 4 35 35 H 1.08993 * 109.47537 * 59.99882 * 9 8 5 36 36 H 1.09002 * 109.46673 * 299.99281 * 9 8 5 37 37 H 1.08000 * 119.87572 * 359.97438 * 11 10 9 38 38 H 1.07993 * 120.12561 * 179.72165 * 12 11 10 39 39 H 0.97005 * 119.99803 * 180.02562 * 17 16 14 40 40 H 1.08000 * 120.12510 * 179.73128 * 22 13 12 41 41 H 1.08002 * 119.87647 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7997 2.6582 1.1820 6 1 3.0912 3.4865 1.1823 7 6 4.6793 2.7391 2.4313 8 7 4.6442 2.7366 -0.0174 9 6 4.9184 4.1341 -0.3778 10 6 5.7858 4.1743 -1.6095 11 6 5.1975 4.2070 -2.8645 12 6 5.9799 4.2381 -3.9963 13 6 7.3818 4.2468 -3.8758 14 6 8.1957 4.2836 -5.0315 15 1 9.2056 3.9027 -4.9931 16 6 7.6926 4.8137 -6.2250 17 7 6.6306 5.5774 -6.2051 18 14 8.5377 4.4309 -7.8463 19 1 8.5299 2.9634 -8.0741 20 1 7.8144 5.1070 -8.9532 21 1 9.9399 4.9173 -7.8007 22 6 7.9679 4.2134 -2.5969 23 6 7.1660 4.1777 -1.4791 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6213 1.4026 -0.9314 29 1 3.7400 0.5065 1.0921 30 1 2.4772 1.2354 2.1131 31 1 4.0527 2.6810 3.3213 32 1 5.3879 1.9109 2.4311 33 1 5.2244 3.6831 2.4314 34 1 4.2240 2.2400 -0.7887 35 1 5.4345 4.6272 0.4458 36 1 3.9786 4.6487 -0.5779 37 1 4.1213 4.2032 -2.9544 38 1 5.5195 4.2590 -4.9729 39 1 6.2818 5.9445 -7.0325 40 1 9.0429 4.2154 -2.4931 41 1 7.6136 4.1516 -0.4966 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583263170.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:28 Heat of formation + Delta-G solvation = 1.436461 kcal Electronic energy + Delta-G solvation = -18453.020020 eV Core-core repulsion = 15717.290733 eV Total energy + Delta-G solvation = -2735.729287 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.71685 -38.55624 -36.10718 -35.31517 -33.14898 -31.20814 -30.85317 -29.78612 -27.74576 -25.13333 -24.17785 -22.86163 -21.61583 -21.16546 -20.62176 -19.20223 -17.32598 -16.78526 -16.70756 -16.17037 -15.71827 -15.59347 -15.15926 -14.76556 -14.53161 -14.22706 -13.79425 -13.67826 -13.57319 -13.19103 -13.09169 -13.01948 -12.73405 -12.58024 -12.46279 -12.29535 -12.04332 -11.95762 -11.67023 -11.47067 -11.31489 -11.21451 -10.98417 -10.18490 -9.38810 -9.25006 -9.12295 -8.62846 -6.32106 0.96551 1.17547 1.37814 1.41637 1.48950 1.53893 2.21229 2.70869 3.42621 3.78545 3.82928 4.07850 4.14531 4.26062 4.35864 4.37439 4.50477 4.57447 4.62962 4.67784 4.79830 4.81430 4.84688 4.97812 5.02578 5.05738 5.14381 5.17516 5.21277 5.32658 5.39292 5.46685 5.50012 5.72913 5.76417 5.90282 5.98303 6.11912 6.24264 6.31258 6.41743 6.59561 6.72085 6.95902 7.06100 8.34077 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023921 B = 0.003920 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.230784 B = 7140.898604 C = 7940.176775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C -0.099 4.099 4 C -0.106 4.106 5 C 0.079 3.921 6 H 0.040 0.960 7 C -0.136 4.136 8 N -0.688 5.688 9 C 0.132 3.868 10 C -0.200 4.200 11 C -0.099 4.099 12 C -0.189 4.189 13 C 0.080 3.920 14 C -0.505 4.505 15 H 0.073 0.927 16 C 0.036 3.964 17 N -0.826 5.826 18 Si 0.982 3.018 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.260 1.260 22 C -0.245 4.245 23 C -0.072 4.072 24 H 0.108 0.892 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.338 0.662 35 H 0.070 0.930 36 H 0.025 0.975 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.288 0.712 40 H 0.094 0.906 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.267 -6.717 10.829 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.177 4.177 3 C -0.137 4.137 4 C -0.144 4.144 5 C -0.031 4.031 6 H 0.058 0.942 7 C -0.194 4.194 8 N -0.321 5.321 9 C 0.004 3.996 10 C -0.201 4.201 11 C -0.117 4.117 12 C -0.209 4.209 13 C 0.077 3.923 14 C -0.534 4.534 15 H 0.091 0.909 16 C -0.179 4.179 17 N -0.452 5.452 18 Si 0.802 3.198 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.184 1.184 22 C -0.265 4.265 23 C -0.091 4.091 24 H 0.126 0.874 25 H 0.115 0.885 26 H 0.131 0.869 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.158 0.842 35 H 0.088 0.912 36 H 0.043 0.957 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.848 -6.633 11.055 15.636 hybrid contribution -0.345 0.383 -1.376 1.470 sum -9.193 -6.250 9.679 14.739 Atomic orbital electron populations 1.23999 0.95842 1.02462 1.01111 1.23013 0.96329 0.98418 0.99987 1.20818 0.98186 0.95860 0.98813 1.21644 0.97269 0.96842 0.98660 1.21639 0.93064 0.97168 0.91184 0.94229 1.21762 0.99722 1.01665 0.96213 1.60673 1.50330 1.13411 1.07718 1.20473 0.95913 0.89140 0.94059 1.19350 0.93600 1.13544 0.93627 1.20765 0.97868 1.00370 0.92729 1.21242 0.94032 1.08252 0.97367 1.17954 0.92950 0.88527 0.92824 1.19821 1.00530 1.37785 0.95299 0.90875 1.26747 0.95211 0.91690 1.04242 1.69876 1.21621 1.22793 1.30949 0.85266 0.79121 0.79628 0.75758 1.18557 1.19081 1.18396 1.21176 0.98041 1.14275 0.92995 1.20626 0.93371 0.98247 0.96856 0.87388 0.88481 0.86899 0.91663 0.92030 0.91342 0.89985 0.90980 0.92694 0.93616 0.84206 0.91203 0.95674 0.87971 0.88327 0.90191 0.88826 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.24 14.32 67.78 0.97 -2.27 16 2 C -0.16 -2.91 9.52 25.65 0.24 -2.67 16 3 C -0.10 -1.99 5.49 29.85 0.16 -1.82 16 4 C -0.11 -2.07 4.79 30.59 0.15 -1.92 16 5 C 0.08 1.81 2.65 44.91 0.12 1.93 16 6 H 0.04 0.92 7.80 -2.39 -0.02 0.90 16 7 C -0.14 -2.88 9.42 71.98 0.68 -2.20 16 8 N -0.69 -20.38 6.30 -495.57 -3.12 -23.50 16 9 C 0.13 4.44 5.60 85.56 0.48 4.91 16 10 C -0.20 -8.50 5.42 -19.67 -0.11 -8.61 16 11 C -0.10 -4.58 9.67 22.22 0.21 -4.37 16 12 C -0.19 -10.19 8.70 22.73 0.20 -10.00 16 13 C 0.08 4.45 5.57 -21.29 -0.12 4.33 16 14 C -0.50 -28.11 9.06 23.46 0.21 -27.90 16 15 H 0.07 3.94 7.91 -2.91 -0.02 3.91 16 16 C 0.04 1.85 5.14 85.26 0.44 2.28 16 17 N -0.83 -44.15 10.95 21.83 0.24 -43.91 16 18 Si 0.98 39.00 29.59 68.60 2.03 41.03 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 20 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 21 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 22 C -0.25 -12.50 9.80 22.73 0.22 -12.28 16 23 C -0.07 -3.26 9.67 22.22 0.21 -3.04 16 24 H 0.11 1.46 8.06 -2.91 -0.02 1.44 16 25 H 0.10 1.52 7.84 -2.91 -0.02 1.50 16 26 H 0.11 1.92 8.06 -2.91 -0.02 1.90 16 27 H 0.06 1.27 7.79 -2.38 -0.02 1.26 16 28 H 0.06 1.41 6.43 -2.39 -0.02 1.40 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.04 1.04 7.45 -2.39 -0.02 1.02 16 34 H 0.34 10.27 6.46 -89.69 -0.58 9.69 16 35 H 0.07 2.24 7.37 -2.39 -0.02 2.22 16 36 H 0.03 0.81 8.00 -2.39 -0.02 0.79 16 37 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.10 5.56 6.16 -2.91 -0.02 5.54 16 39 H 0.29 13.89 8.30 -92.70 -0.77 13.12 16 40 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -58.68 337.32 3.63 -55.05 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: 0.41 Total: 34.95 kcal Atomic # 6 Polarization: -67.69 SS G_CDS: 4.08 Total: -63.62 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -2.88 Total: -67.40 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -58.68 3.63 -55.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583263170.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.487 kcal (2) G-P(sol) polarization free energy of solvation -58.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds