Wall clock time and date at job start Mon Mar 30 2020 06:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50708 * 119.99999 * 2 1 4 4 C 1.52992 * 109.47024 * 125.00282 * 3 2 1 5 5 C 1.53001 * 109.47208 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47107 * 304.99833 * 5 4 3 7 7 C 1.53001 * 109.47381 * 185.00261 * 5 4 3 8 8 N 1.46894 * 109.47295 * 64.99999 * 5 4 3 9 9 C 1.46905 * 111.00172 * 205.00441 * 8 5 4 10 10 C 1.50696 * 109.46830 * 179.97438 * 9 8 5 11 11 C 1.38641 * 119.75187 * 269.72234 * 10 9 8 12 12 C 1.37618 * 120.24842 * 179.72254 * 11 10 9 13 13 C 1.40712 * 119.74526 * 0.57825 * 12 11 10 14 14 C 1.41396 * 120.24544 * 179.68091 * 13 12 11 15 15 H 1.08000 * 119.99877 * 24.39862 * 14 13 12 16 16 C 1.39944 * 120.00042 * 204.40136 * 14 13 12 17 17 N 1.30821 * 119.99947 * 17.86453 * 16 14 13 18 18 Si 1.86801 * 119.99893 * 197.86325 * 16 14 13 19 19 H 1.48498 * 109.47053 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47066 * 120.00398 * 18 16 14 21 21 H 1.48498 * 109.46963 * 239.99943 * 18 16 14 22 22 C 1.40717 * 119.51165 * 359.70039 * 13 12 11 23 23 C 1.37617 * 119.74452 * 359.97438 * 22 13 12 24 24 H 1.07994 * 119.99654 * 359.97438 * 1 2 3 25 25 H 1.07996 * 119.99794 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00066 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46698 * 5.00127 * 3 2 1 28 28 H 1.08998 * 109.47081 * 245.00366 * 3 2 1 29 29 H 1.09004 * 109.47321 * 59.99967 * 4 3 2 30 30 H 1.08998 * 109.47260 * 299.99974 * 4 3 2 31 31 H 1.09003 * 109.46891 * 179.97438 * 7 5 4 32 32 H 1.09005 * 109.46651 * 299.99852 * 7 5 4 33 33 H 1.09004 * 109.47320 * 59.99553 * 7 5 4 34 34 H 1.00895 * 111.00391 * 81.04375 * 8 5 4 35 35 H 1.08998 * 109.46646 * 299.99927 * 9 8 5 36 36 H 1.08999 * 109.47177 * 59.99884 * 9 8 5 37 37 H 1.08001 * 119.87078 * 359.97438 * 11 10 9 38 38 H 1.08003 * 120.12498 * 180.27811 * 12 11 10 39 39 H 0.96998 * 120.00127 * 179.97438 * 17 16 14 40 40 H 1.08001 * 120.12762 * 179.97438 * 22 13 12 41 41 H 1.08007 * 119.87585 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 3.0351 1.3331 1.1815 5 6 3.7997 2.6584 1.1819 6 1 4.2857 2.7978 0.2163 7 6 4.8578 2.6365 2.2869 8 7 2.8630 3.7640 1.4228 9 6 3.3791 5.0219 0.8666 10 6 2.3932 6.1303 1.1320 11 6 1.3986 6.4029 0.2054 12 6 0.4894 7.4089 0.4400 13 6 0.5795 8.1702 1.6199 14 6 -0.3449 9.2108 1.8685 15 1 -1.3193 9.1901 1.4032 16 6 0.0028 10.2677 2.7174 17 7 1.2599 10.4921 3.0015 18 14 -1.3282 11.3579 3.4450 19 1 -2.6585 10.8972 2.9724 20 1 -1.2759 11.2808 4.9270 21 1 -1.1082 12.7619 3.0144 22 6 1.5967 7.8885 2.5506 23 6 2.4909 6.8733 2.2983 24 1 -0.5399 0.9353 0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4027 -0.9314 29 1 3.7401 0.5065 1.0919 30 1 2.4774 1.2356 2.1129 31 1 5.4027 3.5805 2.2868 32 1 4.3718 2.4971 3.2526 33 1 5.5529 1.8160 2.1081 34 1 2.6616 3.8595 2.4069 35 1 4.3325 5.2629 1.3367 36 1 3.5215 4.9124 -0.2085 37 1 1.3346 5.8207 -0.7020 38 1 -0.2874 7.6166 -0.2811 39 1 1.5009 11.2248 3.5896 40 1 1.6754 8.4668 3.4593 41 1 3.2722 6.6550 3.0114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583263177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:31 Heat of formation + Delta-G solvation = 12.702291 kcal Electronic energy + Delta-G solvation = -18476.483039 eV Core-core repulsion = 15741.242275 eV Total energy + Delta-G solvation = -2735.240764 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.10682 -37.09851 -34.90838 -33.72280 -31.69832 -29.52838 -29.20546 -28.50241 -25.99206 -23.83094 -22.82203 -20.99792 -20.45700 -19.76986 -19.63219 -17.26578 -15.73304 -15.43461 -15.01174 -14.86058 -14.42558 -13.95634 -13.61572 -13.48961 -13.06674 -12.81352 -12.64661 -12.45011 -12.02893 -11.90291 -11.67118 -11.58354 -11.38293 -11.01945 -10.97299 -10.86291 -10.72268 -10.56405 -10.46615 -10.25648 -9.51948 -9.36952 -9.26227 -9.10769 -7.96626 -7.41576 -7.26299 -6.74691 -4.32520 2.32653 2.75464 3.07877 3.11648 3.13673 3.19610 3.94488 4.48559 4.77088 4.80631 5.08116 5.14755 5.30718 5.41627 5.48330 5.66400 5.72936 5.75896 5.80472 5.89147 5.97243 5.98290 6.05689 6.22277 6.28640 6.36134 6.41748 6.44074 6.45584 6.69934 6.87216 6.97378 7.09898 7.30910 7.41053 7.49046 7.64710 7.80939 7.93313 8.08640 8.17917 8.33518 8.67000 8.92418 9.00899 10.19936 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026595 B = 0.003865 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.564128 B = 7242.039045 C = 7864.360722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.089 4.089 4 C -0.098 4.098 5 C 0.078 3.922 6 H 0.072 0.928 7 C -0.182 4.182 8 N -0.677 5.677 9 C 0.125 3.875 10 C -0.212 4.212 11 C -0.069 4.069 12 C -0.228 4.228 13 C 0.112 3.888 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.794 5.794 18 Si 0.906 3.094 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.275 1.275 22 C -0.166 4.166 23 C -0.095 4.095 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.340 0.660 35 H 0.018 0.982 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.279 0.721 40 H 0.116 0.884 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.772 -13.323 -1.465 13.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.171 4.171 3 C -0.127 4.127 4 C -0.137 4.137 5 C -0.032 4.032 6 H 0.091 0.909 7 C -0.241 4.241 8 N -0.308 5.308 9 C -0.003 4.003 10 C -0.214 4.214 11 C -0.088 4.088 12 C -0.248 4.248 13 C 0.109 3.891 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.420 5.420 18 Si 0.731 3.269 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.200 1.200 22 C -0.186 4.186 23 C -0.114 4.114 24 H 0.117 0.883 25 H 0.109 0.891 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.158 0.842 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.545 -13.291 -1.901 13.886 hybrid contribution 0.242 0.774 1.039 1.318 sum 3.787 -12.516 -0.862 13.105 Atomic orbital electron populations 1.23868 0.96131 1.01676 1.01933 1.23062 0.96098 0.98658 0.99279 1.20697 0.98783 0.95253 0.97923 1.21485 0.97567 0.95826 0.98775 1.21619 0.91401 0.92181 0.97994 0.90949 1.22512 0.99948 1.01753 0.99884 1.60746 1.44151 1.04242 1.21629 1.20565 0.94180 0.87360 0.98195 1.18906 1.02091 1.01637 0.98750 1.20327 0.94842 0.96534 0.97083 1.20973 1.02696 1.02486 0.98651 1.17623 0.91320 0.90638 0.89475 1.19632 1.01129 1.04363 1.24171 0.90465 1.25905 0.95834 0.97745 0.94652 1.69838 1.17494 1.26543 1.28095 0.86299 0.81952 0.79370 0.79324 1.18386 1.19739 1.20040 1.21272 0.98231 0.98538 1.00514 1.20517 0.98407 0.96693 0.95823 0.88309 0.89108 0.88179 0.89657 0.91875 0.92510 0.92030 0.92711 0.92563 0.92618 0.84197 0.96378 0.92225 0.89527 0.89163 0.91011 0.86606 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.15 14.32 29.01 0.42 -1.73 16 2 C -0.15 -1.65 9.52 -36.02 -0.34 -2.00 16 3 C -0.09 -1.05 5.55 -27.88 -0.15 -1.21 16 4 C -0.10 -1.10 4.87 -26.73 -0.13 -1.23 16 5 C 0.08 0.96 2.59 -67.71 -0.18 0.79 16 6 H 0.07 0.90 7.80 -51.93 -0.40 0.49 16 7 C -0.18 -2.02 9.16 37.16 0.34 -1.68 16 8 N -0.68 -10.32 5.69 -107.99 -0.61 -10.93 16 9 C 0.12 2.16 5.60 -4.98 -0.03 2.14 16 10 C -0.21 -4.56 5.42 -104.33 -0.56 -5.13 16 11 C -0.07 -1.56 9.67 -39.66 -0.38 -1.94 16 12 C -0.23 -5.69 9.80 -38.87 -0.38 -6.07 16 13 C 0.11 3.01 5.58 -106.82 -0.60 2.41 16 14 C -0.46 -12.43 9.05 -37.74 -0.34 -12.77 16 15 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 16 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 17 N -0.79 -20.65 10.95 55.55 0.61 -20.05 16 18 Si 0.91 18.76 29.60 -169.99 -5.03 13.73 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 C -0.17 -4.33 8.70 -38.87 -0.34 -4.66 16 23 C -0.10 -2.21 9.67 -39.66 -0.38 -2.59 16 24 H 0.10 1.13 7.84 -52.49 -0.41 0.72 16 25 H 0.09 0.84 8.06 -52.49 -0.42 0.41 16 26 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 27 H 0.08 1.20 7.40 -51.93 -0.38 0.81 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.65 7.45 -51.93 -0.39 0.26 16 32 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.34 5.34 8.46 -39.29 -0.33 5.00 16 35 H 0.02 0.31 7.38 -51.93 -0.38 -0.08 16 36 H 0.06 1.01 7.99 -51.93 -0.42 0.59 16 37 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 39 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 40 H 0.12 3.12 6.15 -52.49 -0.32 2.80 16 41 H 0.08 1.72 8.06 -52.48 -0.42 1.29 16 LS Contribution 339.85 15.07 5.12 5.12 Total: -1.00 -26.59 339.85 -9.89 -36.48 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -6.82 Total: 9.48 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: -3.15 Total: -33.84 kcal Atomic # 7 Polarization: -30.97 SS G_CDS: -0.01 Total: -30.98 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.59 -9.89 -36.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583263177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.179 kcal (2) G-P(sol) polarization free energy of solvation -26.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds