Wall clock time and date at job start Mon Mar 30 2020 06:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50708 * 119.99999 * 2 1 4 4 C 1.52992 * 109.47024 * 125.00282 * 3 2 1 5 5 C 1.53001 * 109.47208 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47107 * 304.99833 * 5 4 3 7 7 C 1.53001 * 109.47381 * 185.00261 * 5 4 3 8 8 N 1.46894 * 109.47295 * 64.99999 * 5 4 3 9 9 C 1.46905 * 111.00172 * 205.00441 * 8 5 4 10 10 C 1.50696 * 109.46830 * 179.97438 * 9 8 5 11 11 C 1.38641 * 119.75187 * 269.72234 * 10 9 8 12 12 C 1.37618 * 120.24842 * 179.72254 * 11 10 9 13 13 C 1.40712 * 119.74526 * 0.57825 * 12 11 10 14 14 C 1.41396 * 120.24544 * 179.68091 * 13 12 11 15 15 H 1.08000 * 119.99877 * 24.39862 * 14 13 12 16 16 C 1.39944 * 120.00042 * 204.40136 * 14 13 12 17 17 N 1.30821 * 119.99947 * 17.86453 * 16 14 13 18 18 Si 1.86801 * 119.99893 * 197.86325 * 16 14 13 19 19 H 1.48498 * 109.47053 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47066 * 120.00398 * 18 16 14 21 21 H 1.48498 * 109.46963 * 239.99943 * 18 16 14 22 22 C 1.40717 * 119.51165 * 359.70039 * 13 12 11 23 23 C 1.37617 * 119.74452 * 359.97438 * 22 13 12 24 24 H 1.07994 * 119.99654 * 359.97438 * 1 2 3 25 25 H 1.07996 * 119.99794 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00066 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46698 * 5.00127 * 3 2 1 28 28 H 1.08998 * 109.47081 * 245.00366 * 3 2 1 29 29 H 1.09004 * 109.47321 * 59.99967 * 4 3 2 30 30 H 1.08998 * 109.47260 * 299.99974 * 4 3 2 31 31 H 1.09003 * 109.46891 * 179.97438 * 7 5 4 32 32 H 1.09005 * 109.46651 * 299.99852 * 7 5 4 33 33 H 1.09004 * 109.47320 * 59.99553 * 7 5 4 34 34 H 1.00895 * 111.00391 * 81.04375 * 8 5 4 35 35 H 1.08998 * 109.46646 * 299.99927 * 9 8 5 36 36 H 1.08999 * 109.47177 * 59.99884 * 9 8 5 37 37 H 1.08001 * 119.87078 * 359.97438 * 11 10 9 38 38 H 1.08003 * 120.12498 * 180.27811 * 12 11 10 39 39 H 0.96998 * 120.00127 * 179.97438 * 17 16 14 40 40 H 1.08001 * 120.12762 * 179.97438 * 22 13 12 41 41 H 1.08007 * 119.87585 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 3.0351 1.3331 1.1815 5 6 3.7997 2.6584 1.1819 6 1 4.2857 2.7978 0.2163 7 6 4.8578 2.6365 2.2869 8 7 2.8630 3.7640 1.4228 9 6 3.3791 5.0219 0.8666 10 6 2.3932 6.1303 1.1320 11 6 1.3986 6.4029 0.2054 12 6 0.4894 7.4089 0.4400 13 6 0.5795 8.1702 1.6199 14 6 -0.3449 9.2108 1.8685 15 1 -1.3193 9.1901 1.4032 16 6 0.0028 10.2677 2.7174 17 7 1.2599 10.4921 3.0015 18 14 -1.3282 11.3579 3.4450 19 1 -2.6585 10.8972 2.9724 20 1 -1.2759 11.2808 4.9270 21 1 -1.1082 12.7619 3.0144 22 6 1.5967 7.8885 2.5506 23 6 2.4909 6.8733 2.2983 24 1 -0.5399 0.9353 0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4027 -0.9314 29 1 3.7401 0.5065 1.0919 30 1 2.4774 1.2356 2.1129 31 1 5.4027 3.5805 2.2868 32 1 4.3718 2.4971 3.2526 33 1 5.5529 1.8160 2.1081 34 1 2.6616 3.8595 2.4069 35 1 4.3325 5.2629 1.3367 36 1 3.5215 4.9124 -0.2085 37 1 1.3346 5.8207 -0.7020 38 1 -0.2874 7.6166 -0.2811 39 1 1.5009 11.2248 3.5896 40 1 1.6754 8.4668 3.4593 41 1 3.2722 6.6550 3.0114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583263177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:31 Heat of formation + Delta-G solvation = 0.308426 kcal Electronic energy + Delta-G solvation = -18477.020477 eV Core-core repulsion = 15741.242275 eV Total energy + Delta-G solvation = -2735.778202 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.68621 -38.43630 -36.10969 -35.34491 -33.11786 -31.20553 -30.89299 -29.56029 -27.65564 -25.06368 -24.17009 -22.87202 -21.69449 -21.34246 -20.48835 -19.20432 -17.25311 -16.69213 -16.44793 -15.89014 -15.82056 -15.62602 -15.07619 -14.85674 -14.29275 -14.18706 -13.88656 -13.78873 -13.59016 -13.27885 -13.11135 -12.90707 -12.74856 -12.59841 -12.41322 -12.34903 -12.01969 -11.77785 -11.63282 -11.45776 -11.28349 -11.21728 -10.99198 -10.11578 -9.37491 -9.23228 -9.06185 -8.63087 -6.31922 0.95932 1.17787 1.37781 1.48911 1.49962 1.53358 2.21264 2.70802 3.45962 3.83140 3.88916 4.16581 4.22821 4.33347 4.38314 4.44456 4.52800 4.61616 4.63994 4.67916 4.78106 4.85434 4.91809 4.98354 5.06858 5.11823 5.14473 5.18129 5.31616 5.37133 5.40335 5.50075 5.51447 5.73324 5.83691 5.98705 6.03123 6.12388 6.25440 6.33223 6.42203 6.60868 6.72667 6.96212 7.06395 8.34168 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026595 B = 0.003865 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.564128 B = 7242.039045 C = 7864.360722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.088 4.088 4 C -0.092 4.092 5 C 0.080 3.920 6 H 0.076 0.924 7 C -0.177 4.177 8 N -0.683 5.683 9 C 0.133 3.867 10 C -0.198 4.198 11 C -0.073 4.073 12 C -0.246 4.246 13 C 0.079 3.921 14 C -0.504 4.504 15 H 0.072 0.928 16 C 0.035 3.965 17 N -0.827 5.827 18 Si 0.981 3.019 19 H -0.259 1.259 20 H -0.264 1.264 21 H -0.265 1.265 22 C -0.190 4.190 23 C -0.098 4.098 24 H 0.085 0.915 25 H 0.107 0.893 26 H 0.120 0.880 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.337 0.663 35 H 0.027 0.973 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.287 0.713 40 H 0.098 0.902 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.632 -14.983 -1.499 15.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.172 4.172 3 C -0.125 4.125 4 C -0.130 4.130 5 C -0.030 4.030 6 H 0.094 0.906 7 C -0.236 4.236 8 N -0.314 5.314 9 C 0.005 3.995 10 C -0.199 4.199 11 C -0.092 4.092 12 C -0.265 4.265 13 C 0.077 3.923 14 C -0.534 4.534 15 H 0.090 0.910 16 C -0.179 4.179 17 N -0.453 5.453 18 Si 0.802 3.198 19 H -0.183 1.183 20 H -0.188 1.188 21 H -0.190 1.190 22 C -0.209 4.209 23 C -0.117 4.117 24 H 0.103 0.897 25 H 0.126 0.874 26 H 0.138 0.862 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.155 0.845 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.418 -14.971 -1.947 15.730 hybrid contribution 0.068 1.145 0.978 1.507 sum 4.486 -13.826 -0.969 14.567 Atomic orbital electron populations 1.23974 0.96437 1.01893 1.02159 1.23173 0.96108 0.98931 0.99037 1.20646 0.98483 0.94920 0.98481 1.21443 0.97646 0.95849 0.98058 1.21688 0.91289 0.91405 0.98616 0.90621 1.22447 0.99740 1.02127 0.99287 1.60668 1.45360 1.03964 1.21370 1.20445 0.93084 0.86905 0.99045 1.19361 1.01693 1.01655 0.97192 1.20632 0.94361 0.95969 0.98209 1.21173 1.03651 1.03303 0.98393 1.17958 0.92218 0.91628 0.90536 1.19855 1.01297 1.05781 1.26431 0.90987 1.26738 0.98112 0.98715 0.94329 1.69884 1.19252 1.27484 1.28683 0.85177 0.78596 0.77453 0.78575 1.18305 1.18818 1.18978 1.21246 0.99569 0.99898 1.00218 1.20768 0.98151 0.95889 0.96883 0.89703 0.87444 0.86164 0.92383 0.91438 0.90219 0.92721 0.93533 0.92581 0.90645 0.84543 0.95502 0.91276 0.87102 0.88945 0.90218 0.88365 0.87917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.21 14.32 67.78 0.97 -3.24 16 2 C -0.15 -3.01 9.52 25.65 0.24 -2.77 16 3 C -0.09 -1.91 5.55 29.85 0.17 -1.74 16 4 C -0.09 -1.80 4.87 30.59 0.15 -1.66 16 5 C 0.08 1.74 2.59 44.92 0.12 1.86 16 6 H 0.08 1.64 7.80 -2.38 -0.02 1.62 16 7 C -0.18 -3.41 9.16 71.98 0.66 -2.75 16 8 N -0.68 -19.50 5.69 -495.58 -2.82 -22.32 16 9 C 0.13 4.34 5.60 85.55 0.48 4.81 16 10 C -0.20 -8.30 5.42 -19.67 -0.11 -8.41 16 11 C -0.07 -3.27 9.67 22.22 0.21 -3.06 16 12 C -0.25 -12.52 9.80 22.73 0.22 -12.29 16 13 C 0.08 4.40 5.58 -21.29 -0.12 4.28 16 14 C -0.50 -28.14 9.05 23.46 0.21 -27.93 16 15 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 16 C 0.04 1.84 5.14 85.26 0.44 2.27 16 17 N -0.83 -44.19 10.95 21.83 0.24 -43.95 16 18 Si 0.98 39.11 29.60 68.60 2.03 41.14 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 22 C -0.19 -10.19 8.70 22.73 0.20 -9.99 16 23 C -0.10 -4.53 9.67 22.22 0.21 -4.32 16 24 H 0.08 1.93 7.84 -2.91 -0.02 1.91 16 25 H 0.11 1.78 8.06 -2.91 -0.02 1.76 16 26 H 0.12 1.87 8.06 -2.91 -0.02 1.85 16 27 H 0.06 1.58 7.40 -2.39 -0.02 1.56 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 0.98 7.45 -2.39 -0.02 0.96 16 32 H 0.06 1.08 8.13 -2.38 -0.02 1.07 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.34 10.04 8.46 -89.70 -0.76 9.28 16 35 H 0.03 0.84 7.38 -2.39 -0.02 0.82 16 36 H 0.07 2.14 7.99 -2.39 -0.02 2.13 16 37 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 38 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 40 H 0.10 5.53 6.15 -2.91 -0.02 5.52 16 41 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -58.65 339.85 3.73 -54.92 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: 0.22 Total: 35.14 kcal Atomic # 6 Polarization: -68.99 SS G_CDS: 4.06 Total: -64.93 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: -2.58 Total: -66.27 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -58.65 3.73 -54.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583263177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.228 kcal (2) G-P(sol) polarization free energy of solvation -58.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds