Wall clock time and date at job start Mon Mar 30 2020 07:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00082 * 2 1 4 4 H 1.48493 * 109.47209 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47257 * 300.00662 * 3 2 1 6 6 H 1.48507 * 109.46840 * 60.00543 * 3 2 1 7 7 C 1.37881 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00021 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99691 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.46731 * 179.97438 * 9 7 2 11 11 C 1.38601 * 120.79799 * 90.00103 * 10 9 7 12 12 C 1.50703 * 120.44666 * 359.97438 * 11 10 9 13 13 Cl 1.80300 * 109.47128 * 270.00031 * 12 11 10 14 14 N 1.32328 * 119.10496 * 180.25177 * 11 10 9 15 15 C 1.31796 * 120.81602 * 359.44350 * 14 11 10 16 16 N 1.31795 * 121.75775 * 0.57023 * 15 14 11 17 17 C 1.32337 * 120.81265 * 359.72009 * 16 15 14 18 18 C 1.50698 * 120.44263 * 179.97438 * 17 16 15 19 19 Cl 1.80294 * 109.47547 * 270.01948 * 18 17 16 20 20 H 0.96997 * 120.00118 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47114 * 60.00215 * 9 7 2 22 22 H 1.08992 * 109.47074 * 299.99974 * 9 7 2 23 23 H 1.09002 * 109.47152 * 149.99858 * 12 11 10 24 24 H 1.09001 * 109.46980 * 29.99958 * 12 11 10 25 25 H 1.08001 * 119.12343 * 180.31115 * 15 14 11 26 26 H 1.09004 * 109.47263 * 30.02356 * 18 17 16 27 27 H 1.09007 * 109.46893 * 150.02211 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0018 11 6 2.6923 -4.1846 1.1882 12 6 2.2226 -3.6338 2.5099 13 17 3.3278 -2.3100 3.0362 14 7 3.5557 -5.1866 1.1479 15 6 3.9671 -5.6775 -0.0039 16 7 3.5494 -5.1896 -1.1548 17 6 2.6902 -4.1838 -1.1928 18 6 2.2186 -3.6320 -2.5134 19 17 3.3232 -2.3082 -3.0406 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 2.2259 -4.4281 3.2564 24 1 1.2115 -3.2413 2.4014 25 1 4.6683 -6.4989 -0.0048 26 1 2.2204 -4.4258 -3.2604 27 1 1.2077 -3.2393 -2.4030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584642377.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:51 Heat of formation + Delta-G solvation = 14.849444 kcal Electronic energy + Delta-G solvation = -15331.131296 eV Core-core repulsion = 12561.334760 eV Total energy + Delta-G solvation = -2769.796536 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.018 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.78201 -35.76059 -35.60748 -34.37021 -33.94674 -32.20169 -28.65758 -28.41201 -26.38661 -24.06199 -21.34665 -21.32220 -17.57005 -16.53566 -16.24684 -14.95885 -14.73756 -13.98090 -13.70659 -13.68186 -13.40389 -13.10610 -12.90703 -12.76333 -12.31544 -11.39797 -11.19773 -10.78864 -10.53989 -10.27303 -10.22159 -10.02191 -9.83662 -9.80789 -9.75920 -9.52255 -8.85646 -8.49507 -8.43255 -6.10827 -4.11356 1.10492 1.34846 2.71959 3.02682 3.29688 3.38056 3.44691 4.24106 4.27680 4.29100 4.45898 4.64792 5.17502 5.28288 5.32302 5.37054 5.63902 5.68862 5.81307 6.08723 6.09917 6.73275 7.25286 7.29473 7.36405 7.86608 8.13142 8.41962 8.90782 9.53138 10.99738 Molecular weight = 260.02amu Principal moments of inertia in cm(-1) A = 0.015596 B = 0.011556 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.917252 B = 2422.339811 C = 3635.628508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.887 3.113 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.488 4.488 8 H 0.060 0.940 9 C 0.052 3.948 10 C -0.095 4.095 11 C 0.142 3.858 12 C 0.023 3.977 13 Cl -0.150 7.150 14 N -0.505 5.505 15 C 0.261 3.739 16 N -0.505 5.505 17 C 0.142 3.858 18 C 0.023 3.977 19 Cl -0.150 7.150 20 H 0.262 0.738 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.100 0.900 24 H 0.120 0.880 25 H 0.191 0.809 26 H 0.100 0.900 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.341 -8.457 0.000 8.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.526 4.526 8 H 0.078 0.922 9 C 0.014 3.986 10 C -0.099 4.099 11 C -0.005 4.005 12 C -0.040 4.040 13 Cl -0.124 7.124 14 N -0.219 5.219 15 C -0.027 4.027 16 N -0.219 5.219 17 C -0.005 4.005 18 C -0.040 4.040 19 Cl -0.124 7.124 20 H 0.071 0.929 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.119 0.881 24 H 0.138 0.862 25 H 0.207 0.793 26 H 0.119 0.881 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.013 -8.893 -0.002 9.390 hybrid contribution 0.103 1.653 0.000 1.656 sum 3.116 -7.241 -0.002 7.883 Atomic orbital electron populations 1.69923 1.05900 1.26803 1.50770 1.24808 0.94675 0.98858 0.94940 0.86578 0.80504 0.83849 0.77528 1.19621 1.21020 1.21014 1.20749 0.92921 0.88359 1.50562 0.92207 1.18475 0.91955 0.89087 0.99052 1.22167 0.98466 0.96861 0.92416 1.21210 0.92766 0.91501 0.95001 1.22889 0.96535 0.91674 0.92888 1.98730 1.68436 1.54198 1.91004 1.68022 1.11063 1.11398 1.31430 1.24549 0.97471 0.98303 0.82387 1.68027 1.11007 1.11402 1.31482 1.21205 0.92818 0.91465 0.94991 1.22888 0.96527 0.91669 0.92906 1.98730 1.68469 1.54192 1.90977 0.92881 0.94481 0.94473 0.88114 0.86190 0.79282 0.88111 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.21 13.29 55.43 0.74 -23.48 15 2 C 0.07 1.79 5.46 -17.82 -0.10 1.70 15 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 15 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 7 C -0.49 -12.08 9.09 -34.44 -0.31 -12.40 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 9 C 0.05 1.14 4.38 -29.03 -0.13 1.01 15 10 C -0.09 -1.86 5.10 -104.36 -0.53 -2.39 15 11 C 0.14 2.60 6.20 -82.24 -0.51 2.09 15 12 C 0.02 0.39 6.61 36.01 0.24 0.63 15 13 Cl -0.15 -2.80 29.13 -51.86 -1.51 -4.31 15 14 N -0.50 -8.80 10.38 -10.80 -0.11 -8.91 15 15 C 0.26 4.20 12.28 -92.15 -1.13 3.07 15 16 N -0.50 -8.79 10.38 -10.80 -0.11 -8.91 15 17 C 0.14 2.60 6.20 -82.25 -0.51 2.09 15 18 C 0.02 0.39 6.61 36.00 0.24 0.63 15 19 Cl -0.15 -2.80 29.13 -51.86 -1.51 -4.31 15 20 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15 21 H 0.04 0.84 6.09 -51.93 -0.32 0.53 15 22 H 0.04 0.84 6.09 -51.93 -0.32 0.53 15 23 H 0.10 1.39 8.14 -51.93 -0.42 0.97 15 24 H 0.12 1.99 6.08 -51.93 -0.32 1.67 15 25 H 0.19 2.29 8.06 -52.49 -0.42 1.87 15 26 H 0.10 1.39 8.14 -51.93 -0.42 0.97 15 27 H 0.12 1.99 6.08 -51.92 -0.32 1.67 15 LS Contribution 269.83 15.07 4.07 4.07 Total: -1.00 -27.99 269.83 -8.28 -36.28 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: -2.07 Total: -3.05 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.75 Total: -3.58 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.51 Total: -41.29 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -5.59 SS G_CDS: -3.02 Total: -8.61 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.99 -8.28 -36.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584642377.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.126 kcal (2) G-P(sol) polarization free energy of solvation -27.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds