Wall clock time and date at job start Mon Mar 30 2020 07:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00082 * 2 1 4 4 H 1.48493 * 109.47209 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47257 * 300.00662 * 3 2 1 6 6 H 1.48507 * 109.46840 * 60.00543 * 3 2 1 7 7 C 1.37881 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00021 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99691 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.46731 * 179.97438 * 9 7 2 11 11 C 1.38601 * 120.79799 * 90.00103 * 10 9 7 12 12 C 1.50703 * 120.44666 * 359.97438 * 11 10 9 13 13 Cl 1.80300 * 109.47128 * 270.00031 * 12 11 10 14 14 N 1.32328 * 119.10496 * 180.25177 * 11 10 9 15 15 C 1.31796 * 120.81602 * 359.44350 * 14 11 10 16 16 N 1.31795 * 121.75775 * 0.57023 * 15 14 11 17 17 C 1.32337 * 120.81265 * 359.72009 * 16 15 14 18 18 C 1.50698 * 120.44263 * 179.97438 * 17 16 15 19 19 Cl 1.80294 * 109.47547 * 270.01948 * 18 17 16 20 20 H 0.96997 * 120.00118 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47114 * 60.00215 * 9 7 2 22 22 H 1.08992 * 109.47074 * 299.99974 * 9 7 2 23 23 H 1.09002 * 109.47152 * 149.99858 * 12 11 10 24 24 H 1.09001 * 109.46980 * 29.99958 * 12 11 10 25 25 H 1.08001 * 119.12343 * 180.31115 * 15 14 11 26 26 H 1.09004 * 109.47263 * 30.02356 * 18 17 16 27 27 H 1.09007 * 109.46893 * 150.02211 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0018 11 6 2.6923 -4.1846 1.1882 12 6 2.2226 -3.6338 2.5099 13 17 3.3278 -2.3100 3.0362 14 7 3.5557 -5.1866 1.1479 15 6 3.9671 -5.6775 -0.0039 16 7 3.5494 -5.1896 -1.1548 17 6 2.6902 -4.1838 -1.1928 18 6 2.2186 -3.6320 -2.5134 19 17 3.3232 -2.3082 -3.0406 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 2.2259 -4.4281 3.2564 24 1 1.2115 -3.2413 2.4014 25 1 4.6683 -6.4989 -0.0048 26 1 2.2204 -4.4258 -3.2604 27 1 1.2077 -3.2393 -2.4030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584642377.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:50 Heat of formation + Delta-G solvation = 0.373827 kcal Electronic energy + Delta-G solvation = -15331.759006 eV Core-core repulsion = 12561.334760 eV Total energy + Delta-G solvation = -2770.424246 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.018 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.17076 -37.16348 -37.03804 -36.00309 -35.33158 -34.00169 -30.05718 -30.01041 -27.86856 -25.75575 -22.95387 -22.69429 -18.96717 -18.45977 -17.57492 -16.64536 -16.40296 -15.37437 -15.10085 -15.06737 -14.97433 -14.45270 -14.27298 -14.19771 -14.13100 -13.19039 -13.01506 -12.62384 -12.35891 -11.70392 -11.69523 -11.59375 -11.41377 -11.32187 -11.23685 -11.15348 -10.50148 -10.17805 -10.05397 -8.11257 -6.12846 -0.30769 -0.06783 1.36766 1.38035 1.43664 1.52022 1.66274 2.46565 2.90332 2.91009 2.99983 3.25762 3.32258 3.82960 3.95721 4.08233 4.30367 4.36772 4.49663 4.66187 4.66453 5.32056 5.48883 5.55457 5.84035 5.96668 6.22404 6.91820 7.05483 7.52335 8.99336 Molecular weight = 260.02amu Principal moments of inertia in cm(-1) A = 0.015596 B = 0.011556 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.917252 B = 2422.339811 C = 3635.628508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.031 3.969 3 Si 0.924 3.076 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.471 4.471 8 H 0.042 0.958 9 C 0.063 3.937 10 C -0.121 4.121 11 C 0.141 3.859 12 C 0.026 3.974 13 Cl -0.169 7.169 14 N -0.509 5.509 15 C 0.268 3.732 16 N -0.509 5.509 17 C 0.141 3.859 18 C 0.026 3.974 19 Cl -0.169 7.169 20 H 0.261 0.739 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.131 0.869 24 H 0.117 0.883 25 H 0.232 0.768 26 H 0.131 0.869 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.064 -9.802 -0.001 10.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.168 4.168 3 Si 0.752 3.248 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.510 4.510 8 H 0.061 0.939 9 C 0.026 3.974 10 C -0.125 4.125 11 C -0.005 4.005 12 C -0.037 4.037 13 Cl -0.143 7.143 14 N -0.223 5.223 15 C -0.019 4.019 16 N -0.223 5.223 17 C -0.005 4.005 18 C -0.037 4.037 19 Cl -0.142 7.142 20 H 0.070 0.930 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.150 0.850 24 H 0.135 0.865 25 H 0.248 0.752 26 H 0.150 0.850 27 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.742 -10.238 -0.002 10.901 hybrid contribution -0.073 1.934 0.000 1.935 sum 3.669 -8.304 -0.002 9.079 Atomic orbital electron populations 1.69977 1.06611 1.27117 1.52476 1.25264 0.95136 1.00823 0.95559 0.86007 0.79295 0.82019 0.77485 1.20237 1.20863 1.20851 1.20764 0.92017 0.89603 1.48572 0.93921 1.18188 0.92057 0.89063 0.98133 1.21966 0.99497 0.97330 0.93741 1.21397 0.92503 0.91500 0.95120 1.23046 0.95691 0.91750 0.93209 1.98728 1.69079 1.55345 1.91099 1.68143 1.10965 1.11211 1.32000 1.25465 0.96665 0.98203 0.81603 1.68149 1.10917 1.11204 1.32047 1.21393 0.92553 0.91472 0.95108 1.23045 0.95682 0.91744 0.93230 1.98728 1.69111 1.55338 1.91073 0.92961 0.95341 0.95330 0.85039 0.86506 0.75192 0.85039 0.86508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.95 13.29 21.45 0.28 -49.67 15 2 C 0.03 1.60 5.46 84.66 0.46 2.07 15 3 Si 0.92 43.35 29.54 68.60 2.03 45.37 15 4 H -0.28 -13.16 7.11 99.48 0.71 -12.46 15 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 15 6 H -0.28 -13.09 7.11 99.48 0.71 -12.39 15 7 C -0.47 -23.28 9.09 25.60 0.23 -23.05 15 8 H 0.04 2.24 7.74 -2.92 -0.02 2.22 15 9 C 0.06 2.77 4.38 29.10 0.13 2.89 15 10 C -0.12 -4.60 5.10 -19.69 -0.10 -4.70 15 11 C 0.14 4.94 6.20 42.57 0.26 5.20 15 12 C 0.03 0.82 6.61 71.24 0.47 1.29 15 13 Cl -0.17 -6.13 29.13 -2.72 -0.08 -6.21 15 14 N -0.51 -16.34 10.38 -188.07 -1.95 -18.29 15 15 C 0.27 7.73 12.28 180.88 2.22 9.96 15 16 N -0.51 -16.33 10.38 -188.08 -1.95 -18.28 15 17 C 0.14 4.93 6.20 42.57 0.26 5.20 15 18 C 0.03 0.82 6.61 71.24 0.47 1.29 15 19 Cl -0.17 -6.13 29.13 -2.72 -0.08 -6.21 15 20 H 0.26 13.69 8.31 -92.71 -0.77 12.92 15 21 H 0.03 1.30 6.09 -2.39 -0.01 1.28 15 22 H 0.03 1.30 6.09 -2.39 -0.01 1.29 15 23 H 0.13 3.31 8.14 -2.39 -0.02 3.29 15 24 H 0.12 3.78 6.08 -2.39 -0.01 3.77 15 25 H 0.23 4.51 8.06 -2.91 -0.02 4.49 15 26 H 0.13 3.31 8.14 -2.38 -0.02 3.29 15 27 H 0.12 3.78 6.08 -2.38 -0.01 3.77 15 Total: -1.00 -57.92 269.83 3.87 -54.05 By element: Atomic # 1 Polarization: -2.12 SS G_CDS: 1.21 Total: -0.91 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 4.41 Total: 0.15 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -3.62 Total: -86.24 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 17 Polarization: -12.26 SS G_CDS: -0.16 Total: -12.42 kcal Total: -57.92 3.87 -54.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584642377.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.419 kcal (2) G-P(sol) polarization free energy of solvation -57.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds